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Series handle: RePEc:plo:pbio00

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Content

December 2021, Volume 19, Issue 12

1-22 Genome-wide gene expression noise in Escherichia coli is condition-dependent and determined by propagation of noise through the regulatory network
by Arantxa Urchueguía & Luca Galbusera & Dany Chauvin & Gwendoline Bellement & Thomas Julou & Erik van Nimwegen
1-35 Poststroke dendritic arbor regrowth requires the actin nucleator Cobl
by Yuanyuan Ji & Dennis Koch & Jule González Delgado & Madlen Günther & Otto W Witte & Michael M Kessels & Christiane Frahm & Britta Qualmann

November 2021, Volume 19, Issue 11

1-4 iSDAsoil: The first continent-scale soil property map at 30 m resolution provides a soil information revolution for Africa
by Matthew A E Miller & Keith D Shepherd & Bruce Kisitu & Jamie Collinson
1-6 From grassroots to global: A blueprint for building a reproducibility network
by UK Reproducibility Network Steering Committee
1-22 A cloud-based toolbox for the versatile environmental annotation of biodiversity data
by Richard Li & Ajay Ranipeta & John Wilshire & Jeremy Malczyk & Michelle Duong & Robert Guralnick & Adam Wilson & Walter Jetz
1-27 NAMPT-derived NAD+ fuels PARP1 to promote skin inflammation through parthanatos cell death
by Francisco J Martínez-Morcillo & Joaquín Cantón-Sandoval & Francisco J Martínez-Navarro & Isabel Cabas & Idoya Martínez-Vicente & Joy Armistead & Julia Hatzold & Azucena López-Muñoz & Teresa Martínez-Menchón & Raúl Corbalán-Vélez & Jesús Lacal & Matthias Hammerschmidt & José C García-Borrón & Alfonsa García-Ayala & María L Cayuela & Ana B Pérez-Oliva & Diana García-Moreno & Victoriano Mulero

October 2021, Volume 19, Issue 10

1-14 A field guide to cultivating computational biology
by Gregory P Way & Casey S Greene & Piero Carninci & Benilton S Carvalho & Michiel de Hoon & Stacey Finley & Sara J C Gosline & Kim-Anh Lȇ Cao & Jerry S H Lee & Luigi Marchionni & Nicolas Robine & Suzanne S Sindi & Fabian J Theis & Jean Y H Yang & Anne E Carpenter & Elana J Fertig
1-18 A phylogenomic framework for charting the diversity and evolution of giant viruses
by Frank O Aylward & Mohammad Moniruzzaman & Anh D Ha & Eugene V Koonin
1-21 Deep learning allows genome-scale prediction of Michaelis constants from structural features
by Alexander Kroll & Martin K M Engqvist & David Heckmann & Martin J Lercher

September 2021, Volume 19, Issue 9

1-4 Twenty steps to ingrain power asymmetry in global health biomedical research
by Iruka N Okeke
1-5 A 3-year evaluation of preclinicaltrials.eu reveals room for improvement in preregistration of animal studies
by Mira van der Naald & Steven A J Chamuleau & Julia M L Menon & Wim de Leeuw & Judith J de Haan & Dirk J Duncker & Kimberley E Wever
1-18 Microplastics and anthropogenic fibre concentrations in lakes reflect surrounding land use
by Andrew J Tanentzap & Samuel Cottingham & Jérémy Fonvielle & Isobel Riley & Lucy M Walker & Samuel G Woodman & Danai Kontou & Christian M Pichler & Erwin Reisner & Laurent Lebreton
1-21 Stimulation of the left dorsolateral prefrontal cortex with slow rTMS enhances verbal memory formation
by Mircea van der Plas & Verena Braun & Benjamin Johannes Stauch & Simon Hanslmayr
1-23 Cooperating elephants mitigate competition until the stakes get too high
by Li-Li Li & Joshua M Plotnik & Shang-Wen Xia & Estelle Meaux & Rui-Chang Quan

August 2021, Volume 19, Issue 8

1-4 Response to “Vast (but avoidable) underestimation of global biodiversity”
by Stilianos Louca & Florent Mazel & Michael Doebeli & Laura Wegener Parfrey
1-5 Challenges in interpreting cytokine data in COVID-19 affect patient care and management
by Stephen Y Wang & Takehiro Takahashi & Alexander B Pine & William E Damsky & Michael Simonov & Yanhua Zhang & Elizabeth Kieras & Christina C Price & Brett A King & Mark D Siegel & Gary V Desir & Alfred I Lee & Akiko Iwasaki & Hyung J Chun
1-16 A flexible framework for multi-particle refinement in cryo-electron tomography
by Alister Burt & Lorenzo Gaifas & Tom Dendooven & Irina Gutsche
1-36 Conjunctive spatial and self-motion codes are topographically organized in the GABAergic cells of the lateral septum
by Suzanne van der Veldt & Guillaume Etter & Coralie-Anne Mosser & Frédéric Manseau & Sylvain Williams

July 2021, Volume 19, Issue 7

1-3 Don’t let the perfect be the enemy of the good
by Marcus Munafò
1-3 Learning from the past to develop data analysis curricula for the future
by Tracey L Weissgerber
1-8 Heteroresistance to beta-lactam antibiotics may often be a stage in the progression to antibiotic resistance
by Victor I Band & David S Weiss
1-17 Viral dynamics of acute SARS-CoV-2 infection and applications to diagnostic and public health strategies
by Stephen M Kissler & Joseph R Fauver & Christina Mack & Scott W Olesen & Caroline Tai & Kristin Y Shiue & Chaney C Kalinich & Sarah Jednak & Isabel M Ott & Chantal B F Vogels & Jay Wohlgemuth & James Weisberger & John DiFiori & Deverick J Anderson & Jimmie Mancell & David D Ho & Nathan D Grubaugh & Yonatan H Grad
1-21 A cross-institutional analysis of the effects of broadening trainee professional development on research productivity
by Patrick D Brandt & Susi Sturzenegger Varvayanis & Tracey Baas & Amanda F Bolgioni & Janet Alder & Kimberly A Petrie & Isabel Dominguez & Abigail M Brown & C Abigail Stayart & Harinder Singh & Audra Van Wart & Christine S Chow & Ambika Mathur & Barbara M Schreiber & David A Fruman & Brent Bowden & Christopher A Wiesen & Yvonne M Golightly & Chris E Holmquist & Daniel Arneman & Joshua D Hall & Linda E Hyman & Kathleen L Gould & Roger Chalkley & Patrick J Brennwald & Rebekah L Layton
1-23 Educating the future generation of researchers: A cross-disciplinary survey of trends in analysis methods
by Taylor Bolt & Jason S Nomi & Danilo Bzdok & Lucina Q Uddin
1-25 IVEN: A quantitative tool to describe 3D cell position and neighbourhood reveals architectural changes in FGF4-treated preimplantation embryos
by Jessica E Forsyth & Ali H Al-Anbaki & Roberto de la Fuente & Nikkinder Modare & Diego Perez-Cortes & Isabel Rivera & Rowena Seaton Kelly & Simon Cotter & Berenika Plusa
1-27 Assessing the replicability of spatial gene expression using atlas data from the adult mouse brain
by Shaina Lu & Cantin Ortiz & Daniel Fürth & Stephan Fischer & Konstantinos Meletis & Anthony Zador & Jesse Gillis

June 2021, Volume 19, Issue 6

1-5 Atypical and inflexible visual encoding in autism spectrum disorder
by Emily L Isenstein & Woon Ju Park & Duje Tadin
1-15 Promoting inclusive metrics of success and impact to dismantle a discriminatory reward system in science
by Sarah W Davies & Hollie M Putnam & Tracy Ainsworth & Julia K Baum & Colleen B Bove & Sarah C Crosby & Isabelle M Côté & Anne Duplouy & Robinson W Fulweiler & Alyssa J Griffin & Torrance C Hanley & Tessa Hill & Adriana Humanes & Sangeeta Mangubhai & Anna Metaxas & Laura M Parker & Hanny E Rivera & Nyssa J Silbiger & Nicola S Smith & Ana K Spalding & Nikki Traylor-Knowles & Brooke L Weigel & Rachel M Wright & Amanda E Bates
1-34 Intrinsic connectivity reveals functionally distinct cortico-hippocampal networks in the human brain
by Alexander J Barnett & Walter Reilly & Halle R Dimsdale-Zucker & Eda Mizrak & Zachariah Reagh & Charan Ranganath

May 2021, Volume 19, Issue 5

1-3 A generation of junior faculty is at risk from the impacts of COVID-19
by Tiffany Lowe-Power & Louise Dyson & Abigail M Polter
1-10 Cell-level metadata are indispensable for documenting single-cell sequencing datasets
by Sidhant Puntambekar & Jay R Hesselberth & Kent A Riemondy & Rui Fu
1-12 Neural oscillations are a start toward understanding brain activity rather than the end
by Keith B Doelling & M Florencia Assaneo
1-17 Epidemiology and reporting characteristics of preclinical systematic reviews
by Victoria T Hunniford & Joshua Montroy & Dean A Fergusson & Marc T Avey & Kimberley E Wever & Sarah K McCann & Madison Foster & Grace Fox & Mackenzie Lafreniere & Mira Ghaly & Sydney Mannell & Karolina Godwinska & Avonae Gentles & Shehab Selim & Jenna MacNeil & Lindsey Sikora & Emily S Sena & Matthew J Page & Malcolm Macleod & David Moher & Manoj M Lalu
1-20 Meta-analysis of variation suggests that embracing variability improves both replicability and generalizability in preclinical research
by Takuji Usui & Malcolm R Macleod & Sarah K McCann & Alistair M Senior & Shinichi Nakagawa
1-21 Individuals with autism spectrum disorder have altered visual encoding capacity
by Jean-Paul Noel & Ling-Qi Zhang & Alan A Stocker & Dora E Angelaki
1-21 Extracellular DJ-1 induces sterile inflammation in the ischemic brain
by Koutarou Nakamura & Seiichiro Sakai & Jun Tsuyama & Akari Nakamura & Kento Otani & Kumiko Kurabayashi & Yoshiko Yogiashi & Hisao Masai & Takashi Shichita

April 2021, Volume 19, Issue 4

1-22 Quantitative proteome comparison of human hearts with those of model organisms
by Nora Linscheid & Alberto Santos & Pi Camilla Poulsen & Robert W Mills & Kirstine Calloe & Ulrike Leurs & Johan Z Ye & Christian Stolte & Morten B Thomsen & Bo H Bentzen & Pia R Lundegaard & Morten S Olesen & Lars J Jensen & Jesper V Olsen & Alicia Lundby
1-25 Farnesyl pyrophosphate is a new danger signal inducing acute cell death
by Jing Chen & Xiaochen Zhang & Liping Li & Xianqiang Ma & Chunxiao Yang & Zhaodi Liu & Chenyang Li & Maria J Fernandez-Cabezudo & Basel K al-Ramadi & Chuan Wu & Weishan Huang & Yong Zhang & Yonghui Zhang & Wanli Liu

March 2021, Volume 19, Issue 3

1-3 How PLOS Biology aims to foster diversity, equity and inclusion in science
by The PLOS Biology Staff Editors
1-3 Is “bioinformatics” dead?
by Philip E Bourne
1-4 Visible name changes promote inequity for transgender researchers
by Leo Chan Gaskins & Craig R McClain
1-4 Response to Hulman and colleagues regarding “Glucotypes reveal new patterns of glucose dysregulation”
by Alessandra Breschi & Dalia Perelman & Michael Paul Snyder
1-5 Towards precision medicine in diabetes? A critical review of glucotypes
by Adam Hulman & Yuri D Foreman & Martijn C G J Brouwers & Abraham A Kroon & Koen D Reesink & Pieter C Dagnelie & Carla J H van der Kallen & Marleen M J van Greevenbroek & Kristine Færch & Dorte Vistisen & Marit E Jørgensen & Coen D A Stehouwer & Daniel R Witte
1-11 Rebuild the Academy: Supporting academic mothers during COVID-19 and beyond
by Robinson W Fulweiler & Sarah W Davies & Jennifer F Biddle & Amy J Burgin & Emily H G Cooperdock & Torrance C Hanley & Carly D Kenkel & Amy M Marcarelli & Catherine M Matassa & Talea L Mayo & Lory Z Santiago-Vàzquez & Nikki Traylor-Knowles & Maren Ziegler
1-12 From Reductionism to Reintegration: Solving society’s most pressing problems requires building bridges between data types across the life sciences
by Anne E Thessen & Paul Bogdan & David J Patterson & Theresa M Casey & César Hinojo-Hinojo & Orlando de Lange & Melissa A Haendel
1-26 Assessment of transparency indicators across the biomedical literature: How open is open?
by Stylianos Serghiou & Despina G Contopoulos-Ioannidis & Kevin W Boyack & Nico Riedel & Joshua D Wallach & John P A Ioannidis
1-26 Reexposure to a sensorimotor perturbation produces opposite effects on explicit and implicit learning processes
by Guy Avraham & J Ryan Morehead & Hyosub E Kim & Richard B Ivry

February 2021, Volume 19, Issue 2

1-5 Training early career researchers to use meta-research to improve science: A participant-guided “learn by doing” approach
by Tracey L Weissgerber
1-33 Sustained neural rhythms reveal endogenous oscillations supporting speech perception
by Sander van Bree & Ediz Sohoglu & Matthew H Davis & Benedikt Zoefel

January 2021, Volume 19, Issue 1

1-33 Ectoderm to mesoderm transition by down-regulation of actomyosin contractility
by Leily Kashkooli & David Rozema & Lina Espejo-Ramirez & Paul Lasko & François Fagotto

December 2020, Volume 18, Issue 12

1-18 Ensuring the quality and specificity of preregistrations
by Marjan Bakker & Coosje L S Veldkamp & Marcel A L M van Assen & Elise A V Crompvoets & How Hwee Ong & Brian A Nosek & Courtney K Soderberg & David Mellor & Jelte M Wicherts
1-25 Regulation of glial size by eicosapentaenoic acid through a novel Golgi apparatus mechanism
by Albert Zhang & Ziqiang Guan & Kyle Ockerman & Pengyuan Dong & Jiansheng Guo & Zhiping Wang & Dong Yan
1-25 The actions of others act as a pseudo-reward to drive imitation in the context of social reinforcement learning
by Anis Najar & Emmanuelle Bonnet & Bahador Bahrami & Stefano Palminteri
1-26 Generalizable brain network markers of major depressive disorder across multiple imaging sites
by Ayumu Yamashita & Yuki Sakai & Takashi Yamada & Noriaki Yahata & Akira Kunimatsu & Naohiro Okada & Takashi Itahashi & Ryuichiro Hashimoto & Hiroto Mizuta & Naho Ichikawa & Masahiro Takamura & Go Okada & Hirotaka Yamagata & Kenichiro Harada & Koji Matsuo & Saori C Tanaka & Mitsuo Kawato & Kiyoto Kasai & Nobumasa Kato & Hidehiko Takahashi & Yasumasa Okamoto & Okito Yamashita & Hiroshi Imamizu
1-27 Patterns of smallpox mortality in London, England, over three centuries
by Olga Krylova & David J D Earn
1-31 Clustering of Tir during enteropathogenic E. coli infection triggers calcium influx–dependent pyroptosis in intestinal epithelial cells
by Qiyun Zhong & Theodoros I Roumeliotis & Zuza Kozik & Massiel Cepeda-Molero & Luis Ángel Fernández & Avinash R Shenoy & Chris Bakal & Gad Frankel & Jyoti S Choudhary
1-35 LSM12-EPAC1 defines a neuroprotective pathway that sustains the nucleocytoplasmic RAN gradient
by Jongbo Lee & Jumin Park & Ji-hyung Kim & Giwook Lee & Tae-Eun Park & Ki-Jun Yoon & Yoon Ki Kim & Chunghun Lim

November 2020, Volume 18, Issue 11

1-10 We need to keep a reproducible trace of facts, predictions, and hypotheses from gene to function in the era of big data
by Simon Kasif & Richard J Roberts
1-24 EphrinB1 modulates glutamatergic inputs into POMC-expressing progenitors and controls glucose homeostasis
by Manon Gervais & Gwenaël Labouèbe & Alexandre Picard & Bernard Thorens & Sophie Croizier
1-24 Many, but not all, lineage-specific genes can be explained by homology detection failure
by Caroline M Weisman & Andrew W Murray & Sean R Eddy
1-25 NOX5-induced uncoupling of endothelial NO synthase is a causal mechanism and theragnostic target of an age-related hypertension endotype
by Mahmoud H Elbatreek & Sepideh Sadegh & Elisa Anastasi & Emre Guney & Cristian Nogales & Tim Kacprowski & Ahmed A Hassan & Andreas Teubner & Po-Hsun Huang & Chien-Yi Hsu & Paul M H Schiffers & Ger M Janssen & Pamela W M Kleikers & Anil Wipat & Jan Baumbach & Jo G R De Mey & Harald H H W Schmidt
1-38 Rules warp feature encoding in decision-making circuits
by R Becket Ebitz & Jiaxin Cindy Tu & Benjamin Y Hayden

October 2020, Volume 18, Issue 10

1-3 The COVID-19 response illustrates that traditional academic reward structures and metrics do not reflect crucial contributions to modern science
by Adam J Kucharski & Sebastian Funk & Rosalind M Eggo
1-3 Updated science-wide author databases of standardized citation indicators
by John P A Ioannidis & Kevin W Boyack & Jeroen Baas
1-25 Optimising risk-based surveillance for early detection of invasive plant pathogens
by Alexander J Mastin & Timothy R Gottwald & Frank van den Bosch & Nik J Cunniffe & Stephen Parnell
1-38 Neural activity during a simple reaching task in macaques is counter to gating and rebound in basal ganglia–thalamic communication
by Bettina C Schwab & Daisuke Kase & Andrew Zimnik & Robert Rosenbaum & Marcello G Codianni & Jonathan E Rubin & Robert S Turner

September 2020, Volume 18, Issue 9

1-17 Evolutionary dynamics in the Anthropocene: Life history and intensity of human contact shape antipredator responses
by Benjamin Geffroy & Bastien Sadoul & Breanna J Putman & Oded Berger-Tal & László Zsolt Garamszegi & Anders Pape Møller & Daniel T Blumstein
1-37 High-coverage plasma lipidomics reveals novel sex-specific lipidomic fingerprints of age and BMI: Evidence from two large population cohort studies
by Habtamu B Beyene & Gavriel Olshansky & Adam Alexander T. Smith & Corey Giles & Kevin Huynh & Michelle Cinel & Natalie A Mellett & Gemma Cadby & Joseph Hung & Jennie Hui & John Beilby & Gerald F Watts & Jonathan S Shaw & Eric K Moses & Dianna J Magliano & Peter J Meikle

August 2020, Volume 18, Issue 8

1-6 Recommendations for future university pandemic responses: What the first COVID-19 shutdown taught us
by Carolyn Coyne & Jimmy D Ballard & Ira J Blader
1-20 The right temporoparietal junction enables delay of gratification by allowing decision makers to focus on future events
by Alexander Soutschek & Marius Moisa & Christian C Ruff & Philippe N Tobler

July 2020, Volume 18, Issue 7

1-12 The ARRIVE guidelines 2.0: Updated guidelines for reporting animal research
by Nathalie Percie du Sert & Viki Hurst & Amrita Ahluwalia & Sabina Alam & Marc T Avey & Monya Baker & William J Browne & Alejandra Clark & Innes C Cuthill & Ulrich Dirnagl & Michael Emerson & Paul Garner & Stephen T Holgate & David W Howells & Natasha A Karp & Stanley E Lazic & Katie Lidster & Catriona J MacCallum & Malcolm Macleod & Esther J Pearl & Ole H Petersen & Frances Rawle & Penny Reynolds & Kieron Rooney & Emily S Sena & Shai D Silberberg & Thomas Steckler & Hanno Würbel
1-14 The Hong Kong Principles for assessing researchers: Fostering research integrity
by David Moher & Lex Bouter & Sabine Kleinert & Paul Glasziou & Mai Har Sham & Virginia Barbour & Anne-Marie Coriat & Nicole Foeger & Ulrich Dirnagl
1-17 Should a viral genome stay in the host cell or leave? A quantitative dynamics study of how hepatitis C virus deals with this dilemma
by Shoya Iwanami & Kosaku Kitagawa & Hirofumi Ohashi & Yusuke Asai & Kaho Shionoya & Wakana Saso & Kazane Nishioka & Hisashi Inaba & Shinji Nakaoka & Takaji Wakita & Odo Diekmann & Shingo Iwami & Koichi Watashi

June 2020, Volume 18, Issue 6

1-31 Modulation of bacterial multicellularity via spatio-specific polysaccharide secretion
by Salim T Islam & Israel Vergara Alvarez & Fares Saïdi & Annick Guiseppi & Evgeny Vinogradov & Gaurav Sharma & Leon Espinosa & Castrese Morrone & Gael Brasseur & Jean-François Guillemot & Anaïs Benarouche & Jean-Luc Bridot & Gokulakrishnan Ravicoularamin & Alain Cagna & Charles Gauthier & Mitchell Singer & Henri-Pierre Fierobe & Tâm Mignot & Emilia M F Mauriello

May 2020, Volume 18, Issue 5

1-20 Dynamical footprints enable detection of disease emergence
by Tobias S Brett & Pejman Rohani
1-20 Antibiotics can be used to contain drug-resistant bacteria by maintaining sufficiently large sensitive populations
by Elsa Hansen & Jason Karslake & Robert J Woods & Andrew F Read & Kevin B Wood

March 2020, Volume 18, Issue 3

1-10 Interactive youth science workshops benefit student participants and graduate student mentors
by Pallavi Kompella & Brant Gracia & Lucy LeBlanc & Shelly Engelman & Chinmayee Kulkarni & Niral Desai & Viviana June & Stephen March & Sarah Pattengale & Gabriel Rodriguez-Rivera & Seung Woo Ryu & Isabel Strohkendl & Pooja Mandke & Greg Clark
1-27 Eco-evolutionary significance of “loners”
by Fernando W Rossine & Ricardo Martinez-Garcia & Allyson E Sgro & Thomas Gregor & Corina E Tarnita
1-31 Bacterially produced metabolites protect C. elegans neurons from degeneration
by Arles Urrutia & Víctor A García-Angulo & Andrés Fuentes & Mauricio Caneo & Marcela Legüe & Sebastián Urquiza & Scarlett E Delgado & Juan Ugalde & Paula Burdisso & Andrea Calixto
1-45 Context effects on probability estimation
by Wei-Hsiang Lin & Justin L Gardner & Shih-Wei Wu

February 2020, Volume 18, Issue 2

1-10 Macroalgal germplasm banking for conservation, food security, and industry
by Rachael Wade & Simona Augyte & Maddelyn Harden & Sergey Nuzhdin & Charles Yarish & Filipe Alberto

January 2020, Volume 18, Issue 1

1-10 PlotTwist: A web app for plotting and annotating continuous data
by Joachim Goedhart
1-28 ATRX affects the repair of telomeric DSBs by promoting cohesion and a DAXX-dependent activity
by Courtney A Lovejoy & Kaori Takai & Michael S Huh & David J Picketts & Titia de Lange

December 2019, Volume 17, Issue 12

1-25 Coinfections by noninteracting pathogens are not independent and require new tests of interaction
by Frédéric M Hamelin & Linda J S Allen & Vrushali A Bokil & Louis J Gross & Frank M Hilker & Michael J Jeger & Carrie A Manore & Alison G Power & Megan A Rúa & Nik J Cunniffe
1-34 High-order interactions distort the functional landscape of microbial consortia
by Alicia Sanchez-Gorostiaga & Djordje Bajić & Melisa L Osborne & Juan F Poyatos & Alvaro Sanchez

November 2019, Volume 17, Issue 11

1-5 All or nothing: No half-Merge and the evolution of syntax
by Robert C Berwick & Noam Chomsky
1-6 Neuroimaging-based prediction of mental traits: Road to utopia or Orwell?
by Simon B Eickhoff & Robert Langner
1-8 Development, environmental degradation, and disease spread in the Brazilian Amazon
by Marcia C Castro & Andres Baeza & Cláudia Torres Codeço & Zulma M Cucunubá & Ana Paula Dal’Asta & Giulio A De Leo & Andrew P Dobson & Gabriel Carrasco-Escobar & Raquel Martins Lana & Rachel Lowe & Antonio Miguel Vieira Monteiro & Mercedes Pascual & Mauricio Santos-Vega
1-15 Recurrent functional misinterpretation of RNA-seq data caused by sample-specific gene length bias
by Shir Mandelboum & Zohar Manber & Orna Elroy-Stein & Ran Elkon
1-30 Data-driven analyses of motor impairments in animal models of neurological disorders
by Hardeep Ryait & Edgar Bermudez-Contreras & Matthew Harvey & Jamshid Faraji & Behroo Mirza Agha & Andrea Gomez-Palacio Schjetnan & Aaron Gruber & Jon Doan & Majid Mohajerani & Gerlinde A S Metz & Ian Q Whishaw & Artur Luczak

October 2019, Volume 17, Issue 10

1-7 The NIH public access policy did not harm biomedical journals
by A Townsend Peterson & Paul E Johnson & Narayani Barve & Ada Emmett & Marc L Greenberg & Josh Bolick & Huijie Qiao
1-12 Refining animal research: The Animal Study Registry
by Bettina Bert & Céline Heinl & Justyna Chmielewska & Franziska Schwarz & Barbara Grune & Andreas Hensel & Matthias Greiner & Gilbert Schönfelder
1-19 Song playbacks demonstrate slower evolution of song discrimination in birds from Amazonia than from temperate North America
by Jason T Weir & Trevor D Price
1-25 Predicting translational progress in biomedical research
by B Ian Hutchins & Matthew T Davis & Rebecca A Meseroll & George M Santangelo
1-34 Pervasive and diverse collateral sensitivity profiles inform optimal strategies to limit antibiotic resistance
by Jeff Maltas & Kevin B Wood
1-41 A neural ensemble correlation code for sound category identification
by Mina Sadeghi & Xiu Zhai & Ian H Stevenson & Monty A Escabí

August 2019, Volume 17, Issue 8

1-24 Identification of traits and functional connectivity-based neurotraits of chronic pain
by Etienne Vachon-Presseau & Sara E Berger & Taha B Abdullah & James W Griffith & Thomas J Schnitzer & A Vania Apkarian
1-25 mGluR5/ERK signaling regulated the phosphorylation and function of glycine receptor α1ins subunit in spinal dorsal horn of mice
by Zi-Yang Zhang & Hu-Hu Bai & Zhen Guo & Hu-Ling Li & Yong-Tao He & Xing-Lian Duan & Zhan-Wei Suo & Xian Yang & Yong-Xing He & Xiao-Dong Hu
1-28 Strategic deployment of feature-based attentional gain in primate visual cortex
by Vladislav Kozyrev & Mohammad Reza Daliri & Philipp Schwedhelm & Stefan Treue
1-31 Coordinated circadian timing through the integration of local inputs in Arabidopsis thaliana
by Mark Greenwood & Mirela Domijan & Peter D Gould & Anthony J W Hall & James C W Locke

July 2019, Volume 17, Issue 7

1-27 Social intolerance is a consequence, not a cause, of dispersal in spiders
by Violette Chiara & Felipe Ramon Portugal & Raphael Jeanson
1-30 Spectral fingerprints or spectral tilt? Evidence for distinct oscillatory signatures of memory formation
by Marie-Christin Fellner & Stephanie Gollwitzer & Stefan Rampp & Gernot Kreiselmeyr & Daniel Bush & Beate Diehl & Nikolai Axmacher & Hajo Hamer & Simon Hanslmayr

June 2019, Volume 17, Issue 6

1-3 Pleiotropy and synergistic cooperation
by David C Queller
1-4 Plan U: Universal access to scientific and medical research via funder preprint mandates
by Richard Sever & Michael Eisen & John Inglis
1-5 Evolution or revolution? Changing the way science is published and communicated
by Buzz Baum & Enrico Coen
1-11 Improving big citizen science data: Moving beyond haphazard sampling
by Corey T Callaghan & Jodi J L Rowley & William K Cornwell & Alistair G B Poore & Richard E Major
1-24 Inferring the distribution of fitness effects of spontaneous mutations in Chlamydomonas reinhardtii
by Katharina B Böndel & Susanne A Kraemer & Toby Samuels & Deirdre McClean & Josianne Lachapelle & Rob W Ness & Nick Colegrave & Peter D Keightley
1-29 Complement alone drives efficacy of a chimeric antigonococcal monoclonal antibody
by Sunita Gulati & Frank J Beurskens & Bart-Jan de Kreuk & Marcel Roza & Bo Zheng & Rosane B DeOliveira & Jutamas Shaughnessy & Nancy A Nowak & Ronald P Taylor & Marina Botto & Xianbao He & Robin R Ingalls & Trent M Woodruff & Wen-Chao Song & Janine Schuurman & Peter A Rice & Sanjay Ram

May 2019, Volume 17, Issue 5

1-14 Open science challenges, benefits and tips in early career and beyond
by Christopher Allen & David M A Mehler
1-23 Transition bias influences the evolution of antibiotic resistance in Mycobacterium tuberculosis
by Joshua L Payne & Fabrizio Menardo & Andrej Trauner & Sonia Borrell & Sebastian M Gygli & Chloe Loiseau & Sebastien Gagneux & Alex R Hall
1-28 Microstructural and functional gradients are increasingly dissociated in transmodal cortices
by Casey Paquola & Reinder Vos De Wael & Konrad Wagstyl & Richard A I Bethlehem & Seok-Jun Hong & Jakob Seidlitz & Edward T Bullmore & Alan C Evans & Bratislav Misic & Daniel S Margulies & Jonathan Smallwood & Boris C Bernhardt
1-34 Animal models of chemotherapy-induced peripheral neuropathy: A machine-assisted systematic review and meta-analysis
by Gillian L Currie & Helena N Angel-Scott & Lesley Colvin & Fala Cramond & Kaitlyn Hair & Laila Khandoker & Jing Liao & Malcolm Macleod & Sarah K McCann & Rosie Morland & Nicki Sherratt & Robert Stewart & Ezgi Tanriver-Ayder & James Thomas & Qianying Wang & Rachel Wodarski & Ran Xiong & Andrew S C Rice & Emily S Sena

April 2019, Volume 17, Issue 4

1-5 Questioning the evidence for BCI-based communication in the complete locked-in state
by Martin Spüler
1-7 Thought-based interaction: Same data, same methods, different results?
by Reinhold Scherer
1-9 Exact replication: Foundation of science or game of chance?
by Sophie K Piper & Ulrike Grittner & Andre Rex & Nico Riedel & Felix Fischer & Robert Nadon & Bob Siegerink & Ulrich Dirnagl
1-32 The amplitude in periodic neural state trajectories underlies the tempo of rhythmic tapping
by Jorge Gámez & Germán Mendoza & Luis Prado & Abraham Betancourt & Hugo Merchant

March 2019, Volume 17, Issue 3

1-8 PlotsOfData—A web app for visualizing data together with their summaries
by Marten Postma & Joachim Goedhart
1-16 Biodiversity data integration—the significance of data resolution and domain
by Christian König & Patrick Weigelt & Julian Schrader & Amanda Taylor & Jens Kattge & Holger Kreft
1-34 Chronotopic maps in human supplementary motor area
by Foteini Protopapa & Masamichi J Hayashi & Shrikanth Kulashekhar & Wietske van der Zwaag & Giovanni Battistella & Micah M Murray & Ryota Kanai & Domenica Bueti

February 2019, Volume 17, Issue 2

1-10 A proposal for the future of scientific publishing in the life sciences
by Bodo M Stern & Erin K O’Shea
1-12 On the value of preprints: An early career researcher perspective
by Sarvenaz Sarabipour & Humberto J Debat & Edward Emmott & Steven J Burgess & Benjamin Schwessinger & Zach Hensel
1-20 Scrutinizing assortative mating in birds
by Daiping Wang & Wolfgang Forstmeier & Mihai Valcu & Niels J Dingemanse & Martin Bulla & Christiaan Both & Renée A Duckworth & Lynna Marie Kiere & Patrik Karell & Tomáš Albrecht & Bart Kempenaers
1-22 A novel nonosteocytic regulatory mechanism of bone modeling
by Lior Ofer & Mason N Dean & Paul Zaslansky & Shiri Kult & Yulia Shwartz & Janna Zaretsky & Shelley Griess-Fishheimer & Efrat Monsonego-Ornan & Elazar Zelzer & Ron Shahar
1-22 Attention promotes the neural encoding of prediction errors
by Cooper A Smout & Matthew F Tang & Marta I Garrido & Jason B Mattingley
1-26 A single pair of leucokinin neurons are modulated by feeding state and regulate sleep–metabolism interactions
by Maria E Yurgel & Priyanka Kakad & Meet Zandawala & Dick R Nässel & Tanja A Godenschwege & Alex C Keene
1-30 Microglia exit the CNS in spinal root avulsion
by Lauren A Green & Julia C Nebiolo & Cody J Smith
1-30 A census-based estimate of Earth's bacterial and archaeal diversity
by Stilianos Louca & Florent Mazel & Michael Doebeli & Laura Wegener Parfrey
1-31 Fast near-whole–brain imaging in adult Drosophila during responses to stimuli and behavior
by Sophie Aimon & Takeo Katsuki & Tongqiu Jia & Logan Grosenick & Michael Broxton & Karl Deisseroth & Terrence J Sejnowski & Ralph J Greenspan

January 2019, Volume 17, Issue 1

1-4 Open notebook science can maximize impact for rare disease projects
by Rachel J Harding
1-7 Evidence that nonsignificant results are sometimes preferred: Reverse P-hacking or selective reporting?
by Pierre J C Chuard & Milan Vrtílek & Megan L Head & Michael D Jennions
1-15 Contest models highlight inherent inefficiencies of scientific funding competitions
by Kevin Gross & Carl T Bergstrom
1-32 Triplet-pore structure of a highly divergent TOM complex of hydrogenosomes in Trichomonas vaginalis
by Abhijith Makki & Petr Rada & Vojtěch Žárský & Sami Kereïche & Lubomír Kováčik & Marian Novotný & Tobias Jores & Doron Rapaport & Jan Tachezy
1-33 A transient helix in the disordered region of dynein light intermediate chain links the motor to structurally diverse adaptors for cargo transport
by Ricardo Celestino & Morkos A Henen & José B Gama & Cátia Carvalho & Maxwell McCabe & Daniel J Barbosa & Alexandra Born & Parker J Nichols & Ana X Carvalho & Reto Gassmann & Beat Vögeli

December 2018, Volume 16, Issue 12

1-2 Reply to “Far away from the lamppost”
by Thomas Stoeger & Martin Gerlach & Richard I Morimoto & Luís A Nunes Amaral
1-4 Plane inclinations: A critique of hypothesis and model choice in Barbi et al
by Saul Justin Newman
1-12 Errors as a primary cause of late-life mortality deceleration and plateaus
by Saul Justin Newman
1-15 Analysis validation has been neglected in the Age of Reproducibility
by Kathleen E Lotterhos & Jason H Moore & Ann E Stapleton
1-46 Neural responses to natural and model-matched stimuli reveal distinct computations in primary and nonprimary auditory cortex
by Sam V Norman-Haignere & Josh H McDermott

November 2018, Volume 16, Issue 11

1-29 Heterologous Hsp90 promotes phenotypic diversity through network evolution
by Tracy Chih-Ting Koubkova-Yu & Jung-Chi Chao & Jun-Yi Leu

October 2018, Volume 16, Issue 10

1-3 Population sampling affects pseudoreplication
by Crispin Y Jordan
1-7 Crafting your scientist brand
by Peter J Hotez
1-7 The Open Source Seed Licence: A novel approach to safeguarding access to plant germplasm
by Johannes Kotschi & Bernd Horneburg
1-29 Quantitative assessment of cell population diversity in single-cell landscapes
by Qi Liu & Charles A Herring & Quanhu Sheng & Jie Ping & Alan J Simmons & Bob Chen & Amrita Banerjee & Wei Li & Guoqiang Gu & Robert J Coffey & Yu Shyr & Ken S Lau

September 2018, Volume 16, Issue 9

1-5 Science in the fight to uphold the rights of children
by Arthur L Caplan & Peter J Hotez
1-19 Hook length of the bacterial flagellum is optimized for maximal stability of the flagellar bundle
by Imke Spöring & Vincent A Martinez & Christian Hotz & Jana Schwarz-Linek & Keara L Grady & Josué M Nava-Sedeño & Teun Vissers & Hanna M Singer & Manfred Rohde & Carole Bourquin & Haralampos Hatzikirou & Wilson C K Poon & Yann S Dufour & Marc Erhardt
1-20 Manipulating the revision of reward value during the intertrial interval increases sign tracking and dopamine release
by Brian Lee & Ronny N Gentry & Gregory B Bissonette & Rae J Herman & John J Mallon & Daniel W Bryden & Donna J Calu & Geoffrey Schoenbaum & Etienne Coutureau & Alain R Marchand & Mehdi Khamassi & Matthew R Roesch
1-33 Transcriptional outcomes and kinetic patterning of gene expression in response to NF-κB activation
by Mingming Zhao & Jaimy Joy & Weiqiang Zhou & Supriyo De & William H Wood III & Kevin G Becker & Hongkai Ji & Ranjan Sen

August 2018, Volume 16, Issue 8

1-6 Reconciling corruption with conservation triage: Should investments shift from the last best places?
by Craig Packer & Stephen Polasky
1-9 Provenance and risk in transfer of biological materials
by Jane Nielsen & Tania Bubela & Don R C Chalmers & Amber Johns & Linda Kahl & Joanne Kamens & Charles Lawson & John Liddicoat & Rebekah McWhirter & Ann Monotti & James Scheibner & Tess Whitton & Dianne Nicol
1-11 Why is congenital Zika syndrome asymmetrically distributed among human populations?
by Jimena Barbeito-Andrés & Lavínia Schuler-Faccini & Patricia Pestana Garcez
1-12 Best Match: New relevance search for PubMed
by Nicolas Fiorini & Kathi Canese & Grisha Starchenko & Evgeny Kireev & Won Kim & Vadim Miller & Maxim Osipov & Michael Kholodov & Rafis Ismagilov & Sunil Mohan & James Ostell & Zhiyong Lu
1-19 Timescales of influenza A/H3N2 antibody dynamics
by Adam J Kucharski & Justin Lessler & Derek A T Cummings & Steven Riley
1-21 FusC, a member of the M16 protease family acquired by bacteria for iron piracy against plants
by Rhys Grinter & Iain D Hay & Jiangning Song & Jiawei Wang & Don Teng & Vijay Dhanesakaran & Jonathan J Wilksch & Mark R Davies & Dene Littler & Simone A Beckham & Ian R Henderson & Richard A Strugnell & Gordon Dougan & Trevor Lithgow

June 2018, Volume 16, Issue 6

1-19 Reporting bias in the literature on the associations of health-related behaviors and statins with cardiovascular disease and all-cause mortality
by Leandro Fórnias Machado de Rezende & Juan Pablo Rey-López & Thiago Hérick de Sá & Nicholas Chartres & Alice Fabbri & Lauren Powell & Emmanuel Stamatakis & Lisa Bero
1-37 Classes and continua of hippocampal CA1 inhibitory neurons revealed by single-cell transcriptomics
by Kenneth D Harris & Hannah Hochgerner & Nathan G Skene & Lorenza Magno & Linda Katona & Carolina Bengtsson Gonzales & Peter Somogyi & Nicoletta Kessaris & Sten Linnarsson & Jens Hjerling-Leffler

May 2018, Volume 16, Issue 5

1-23 High-dimensional single-cell phenotyping reveals extensive haploinsufficiency
by Shinsuke Ohnuki & Yoshikazu Ohya

April 2018, Volume 16, Issue 4

1-4 Meta-research matters: Meta-spin cycles, the blindness of bias, and rebuilding trust
by Lisa Bero
1-15 Dissecting the null model for biological invasions: A meta-analysis of the propagule pressure effect
by Phillip Cassey & Steven Delean & Julie L Lockwood & Jason S Sadowski & Tim M Blackburn
1-20 The gender gap in science: How long until women are equally represented?
by Luke Holman & Devi Stuart-Fox & Cindy E Hauser
1-27 The neural system of metacognition accompanying decision-making in the prefrontal cortex
by Lirong Qiu & Jie Su & Yinmei Ni & Yang Bai & Xuesong Zhang & Xiaoli Li & Xiaohong Wan
1-32 Agent-specific learning signals for self–other distinction during mentalising
by Sam Ereira & Raymond J Dolan & Zeb Kurth-Nelson

March 2018, Volume 16, Issue 3

1-2 Science-based taxonomy still needs better governance: Response to Thomson et al
by Stephen Thomas Garnett & Les Christidis
1-6 Meta-research: Why research on research matters
by John P A Ioannidis
1-8 Experiments in interdisciplinarity: Responsible research and innovation and the public good
by Ana Delgado & Heidrun Åm
1-22 Autophagy is essential for maintaining the growth of a human (mini-)organ: Evidence from scalp hair follicle organ culture
by Chiara Parodi & Jonathan A Hardman & Giulia Allavena & Roberto Marotta & Tiziano Catelani & Marta Bertolini & Ralf Paus & Benedetto Grimaldi
1-40 The Plasmodium falciparum transcriptome in severe malaria reveals altered expression of genes involved in important processes including surface antigen–encoding var genes
by Gerry Q Tonkin-Hill & Leily Trianty & Rintis Noviyanti & Hanh H T Nguyen & Boni F Sebayang & Daniel A Lampah & Jutta Marfurt & Simon A Cobbold & Janavi S Rambhatla & Malcolm J McConville & Stephen J Rogerson & Graham V Brown & Karen P Day & Ric N Price & Nicholas M Anstey & Anthony T Papenfuss & Michael F Duffy

February 2018, Volume 16, Issue 2

1-13 Reproducibility of preclinical animal research improves with heterogeneity of study samples
by Bernhard Voelkl & Lucile Vogt & Emily S Sena & Hanno Würbel
1-18 Bonobo and chimpanzee gestures overlap extensively in meaning
by Kirsty E Graham & Catherine Hobaiter & James Ounsley & Takeshi Furuichi & Richard W Byrne

January 2018, Volume 16, Issue 1

1-27 Control of recollection by slow gamma dominating mid-frequency gamma in hippocampus CA1
by Dino Dvorak & Basma Radwan & Fraser T Sparks & Zoe Nicole Talbot & André A Fenton
1-27 Structure, function, and control of the human musculoskeletal network
by Andrew C Murphy & Sarah F Muldoon & David Baker & Adam Lastowka & Brittany Bennett & Muzhi Yang & Danielle S Bassett

December 2017, Volume 15, Issue 12

1-10 The unsteady state and inertia of chemical regulation under the US Toxic Substances Control Act
by Sheldon Krimsky
1-15 Saccades are phase-locked to alpha oscillations in the occipital and medial temporal lobe during successful memory encoding
by Tobias Staudigl & Elisabeth Hartl & Soheyl Noachtar & Christian F Doeller & Ole Jensen
1-27 Task relevance modulates the behavioural and neural effects of sensory predictions
by Ryszard Auksztulewicz & Karl J Friston & Anna C Nobre
1-34 The Ink4a/Arf locus operates as a regulator of the circadian clock modulating RAS activity
by Rukeia El-Athman & Nikolai N Genov & Jeannine Mazuch & Kaiyang Zhang & Yong Yu & Luise Fuhr & Mónica Abreu & Yin Li & Thomas Wallach & Achim Kramer & Clemens A Schmitt & Angela Relógio

November 2017, Volume 15, Issue 11

1-8 Conservation demands safe gene drive
by Kevin M Esvelt & Neil J Gemmell
1-11 Mutualism in museums: A model for engaging undergraduates in biodiversity science
by Anna E Hiller & Carla Cicero & Monica J Albe & Theresa L W Barclay & Carol L Spencer & Michelle S Koo & Rauri C K Bowie & Eileen A Lacey
1-12 The prehistory of biology preprints: A forgotten experiment from the 1960s
by Matthew Cobb
1-22 Rate, not selectivity, determines neuronal population coding accuracy in auditory cortex
by Wensheng Sun & Dennis L Barbour

October 2017, Volume 15, Issue 10

1-3 Additional support for RCR: A validated article-level measure of scientific influence
by B Ian Hutchins & Travis A Hoppe & Rebecca A Meseroll & James M Anderson & George M Santangelo
1-5 A critical evaluation of the algorithm behind the Relative Citation Ratio (RCR)
by A Cecile J W Janssens & Michael Goodman & Kimberly R Powell & Marta Gwinn
1-14 Crowd vocal learning induces vocal dialects in bats: Playback of conspecifics shapes fundamental frequency usage by pups
by Yosef Prat & Lindsay Azoulay & Roi Dor & Yossi Yovel
1-25 Imagining the “open” university: Sharing scholarship to improve research and education
by Erin C McKiernan
1-44 A molecular atlas of the developing ectoderm defines neural, neural crest, placode, and nonneural progenitor identity in vertebrates
by Jean-Louis Plouhinec & Sofía Medina-Ruiz & Caroline Borday & Elsa Bernard & Jean-Philippe Vert & Michael B Eisen & Richard M Harland & Anne H Monsoro-Burq

September 2017, Volume 15, Issue 9

1-16 ‘Spin’ in published biomedical literature: A methodological systematic review
by Kellia Chiu & Quinn Grundy & Lisa Bero
1-29 Identifying genetic variants that affect viability in large cohorts
by Hakhamanesh Mostafavi & Tomaz Berisa & Felix R Day & John R B Perry & Molly Przeworski & Joseph K Pickrell

May 2017, Volume 15, Issue 5

1-6 The co-production of what? Knowledge, values, and social relations in health care
by Angela Filipe & Alicia Renedo & Cicely Marston
1-13 AEDT: A new concept for ecological dynamics in the ever-changing world
by Peter Chesson
1-28 Local introduction and heterogeneous spatial spread of dengue-suppressing Wolbachia through an urban population of Aedes aegypti
by Tom L Schmidt & Nicholas H Barton & Gordana Rašić & Andrew P Turley & Brian L Montgomery & Inaki Iturbe-Ormaetxe & Peter E Cook & Peter A Ryan & Scott A Ritchie & Ary A Hoffmann & Scott L O’Neill & Michael Turelli
1-30 Teaching genetics prior to teaching evolution improves evolution understanding but not acceptance
by Rebecca Mead & Momna Hejmadi & Laurence D Hurst

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