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A Review of Multi‐Compartment Infectious Disease Models

Author

Listed:
  • Lu Tang
  • Yiwang Zhou
  • Lili Wang
  • Soumik Purkayastha
  • Leyao Zhang
  • Jie He
  • Fei Wang
  • Peter X.‐K. Song

Abstract

Multi‐compartment models have been playing a central role in modelling infectious disease dynamics since the early 20th century. They are a class of mathematical models widely used for describing the mechanism of an evolving epidemic. Integrated with certain sampling schemes, such mechanistic models can be applied to analyse public health surveillance data, such as assessing the effectiveness of preventive measures (e.g. social distancing and quarantine) and forecasting disease spread patterns. This review begins with a nationwide macromechanistic model and related statistical analyses, including model specification, estimation, inference and prediction. Then, it presents a community‐level micromodel that enables high‐resolution analyses of regional surveillance data to provide current and future risk information useful for local government and residents to make decisions on reopenings of local business and personal travels. r software and scripts are provided whenever appropriate to illustrate the numerical detail of algorithms and calculations. The coronavirus disease 2019 pandemic surveillance data from the state of Michigan are used for the illustration throughout this paper.

Suggested Citation

  • Lu Tang & Yiwang Zhou & Lili Wang & Soumik Purkayastha & Leyao Zhang & Jie He & Fei Wang & Peter X.‐K. Song, 2020. "A Review of Multi‐Compartment Infectious Disease Models," International Statistical Review, International Statistical Institute, vol. 88(2), pages 462-513, August.
  • Handle: RePEc:bla:istatr:v:88:y:2020:i:2:p:462-513
    DOI: 10.1111/insr.12402
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    References listed on IDEAS

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    1. Claudia Czado & Peter Song, 2008. "State space mixed models for longitudinal observations with binary and binomial responses," Statistical Papers, Springer, vol. 49(4), pages 691-714, October.
    2. Ahmed, E. & Agiza, H.N., 1998. "On modeling epidemics Including latency, incubation and variable susceptibility," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 253(1), pages 347-352.
    3. Christian Gollier & Olivier Gossner, 2020. "Group testing against Covid-19," Post-Print hal-02550740, HAL.
    4. Neil M. Ferguson & Derek A. T. Cummings & Christophe Fraser & James C. Cajka & Philip C. Cooley & Donald S. Burke, 2006. "Strategies for mitigating an influenza pandemic," Nature, Nature, vol. 442(7101), pages 448-452, July.
    5. N. G. Becker & T. Britton, 1999. "Statistical studies of infectious disease incidence," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 61(2), pages 287-307, April.
    6. Phenyo E. Lekone & Bärbel F. Finkenstädt, 2006. "Statistical Inference in a Stochastic Epidemic SEIR Model with Control Intervention: Ebola as a Case Study," Biometrics, The International Biometric Society, vol. 62(4), pages 1170-1177, December.
    7. Vanja Dukic & Hedibert F. Lopes & Nicholas G. Polson, 2012. "Tracking Epidemics With Google Flu Trends Data and a State-Space SEIR Model," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 107(500), pages 1410-1426, December.
    8. Olivier Gossner, 2020. "Group Testing against COVID-19," Working Papers 2020-02, Center for Research in Economics and Statistics.
    9. Willox, R. & Grammaticos, B. & Carstea, A.S. & Ramani, A., 2003. "Epidemic dynamics: discrete-time and cellular automaton models," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 328(1), pages 13-22.
    10. David J. Spiegelhalter & Nicola G. Best & Bradley P. Carlin & Angelika Van Der Linde, 2002. "Bayesian measures of model complexity and fit," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 64(4), pages 583-639, October.
    11. Luís M A Bettencourt & Ruy M Ribeiro, 2008. "Real Time Bayesian Estimation of the Epidemic Potential of Emerging Infectious Diseases," PLOS ONE, Public Library of Science, vol. 3(5), pages 1-9, May.
    12. Henryk Fuks & Anna T. Lawniczak, 2001. "Individual-based lattice model for spatial spread of epidemics," Discrete Dynamics in Nature and Society, Hindawi, vol. 6, pages 1-10, January.
    13. Fuentes, M.A. & Kuperman, M.N., 1999. "Cellular automata and epidemiological models with spatial dependence," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 267(3), pages 471-486.
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    Cited by:

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    2. Mukherjee, Nayana & Smith?, Stacey R. & Haque, Mainul, 2023. "Spatio-temporal patterns resulting from a predator-based disease with immune prey," Chaos, Solitons & Fractals, Elsevier, vol. 168(C).
    3. George Selgin, 2021. "The fiscal and monetary response to COVID‐19: What the Great Depression has – and hasn't – taught us," Economic Affairs, Wiley Blackwell, vol. 41(1), pages 3-20, February.
    4. Thul, Lawrence & Powell, Warren, 2023. "Stochastic optimization for vaccine and testing kit allocation for the COVID-19 pandemic," European Journal of Operational Research, Elsevier, vol. 304(1), pages 325-338.

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