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Solving Differential Equations in R: Package deSolve

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  1. Christian L Althaus & Beda Joos & Alan S Perelson & Huldrych F Günthard, 2014. "Quantifying the Turnover of Transcriptional Subclasses of HIV-1-Infected Cells," PLOS Computational Biology, Public Library of Science, vol. 10(10), pages 1-11, October.
  2. Bachirou O. Taddé & Hélène Jacqmin‐Gadda & Jean‐François Dartigues & Daniel Commenges & Cécile Proust‐Lima, 2020. "Dynamic modeling of multivariate dimensions and their temporal relationships using latent processes: Application to Alzheimer's disease," Biometrics, The International Biometric Society, vol. 76(3), pages 886-899, September.
  3. Takahashi, Daisuke & Sim, Seung-Woo & Park, Eun-Jin, 2019. "Colonial population dynamics of Spartina alterniflora," Ecological Modelling, Elsevier, vol. 395(C), pages 45-50.
  4. Karim, Md Aktar Ul & Bhagat, Supriya Ramdas & Bhowmick, Amiya Ranjan, 2022. "Empirical detection of parameter variation in growth curve models using interval specific estimators," Chaos, Solitons & Fractals, Elsevier, vol. 157(C).
  5. Schmitt, Walter & Bruns, Eric & Dollinger, Margit & Sowig, Peter, 2013. "Mechanistic TK/TD-model simulating the effect of growth inhibitors on Lemna populations," Ecological Modelling, Elsevier, vol. 255(C), pages 1-10.
  6. Lamonica, Dominique & Herbach, Ulysse & Orias, Frédéric & Clément, Bernard & Charles, Sandrine & Lopes, Christelle, 2016. "Mechanistic modelling of daphnid-algae dynamics within a laboratory microcosm," Ecological Modelling, Elsevier, vol. 320(C), pages 213-230.
  7. Jianbin Tan & Ye Shen & Yang Ge & Leonardo Martinez & Hui Huang, 2023. "Age‐related model for estimating the symptomatic and asymptomatic transmissibility of COVID‐19 patients," Biometrics, The International Biometric Society, vol. 79(3), pages 2525-2536, September.
  8. Win Min Han & Wiriya Mahikul & Thomas Pouplin & Saranath Lawpoolsri & Lisa J White & Wirichada Pan-Ngum, 2021. "Assessing the impacts of short-course multidrug-resistant tuberculosis treatment in the Southeast Asia Region using a mathematical modeling approach," PLOS ONE, Public Library of Science, vol. 16(3), pages 1-14, March.
  9. Gregor Kalinkat & Björn Christian Rall & Olivera Vucic-Pestic & Ulrich Brose, 2011. "The Allometry of Prey Preferences," PLOS ONE, Public Library of Science, vol. 6(10), pages 1-11, October.
  10. Tomar, Siddharth S. & Hua-Van, Aurélie & Le Rouzic, Arnaud, 2023. "A population genetics theory for piRNA-regulated transposable elements," Theoretical Population Biology, Elsevier, vol. 150(C), pages 1-13.
  11. Moore, Christopher M. & Catella, Samantha A. & Abbott, Karen C., 2018. "Population dynamics of mutualism and intraspecific density dependence: How θ-logistic density dependence affects mutualistic positive feedback," Ecological Modelling, Elsevier, vol. 368(C), pages 191-197.
  12. Alex Root, 2019. "Mathematical Modeling of The Challenge to Detect Pancreatic Adenocarcinoma Early with Biomarkers," Challenges, MDPI, vol. 10(1), pages 1-15, April.
  13. Katin, Alexey & Giudice, Dario Del & Hall, Nathan S. & Paerl, Hans W. & Obenour, Daniel R., 2021. "Simulating algal dynamics within a Bayesian framework to evaluate controls on estuary productivity," Ecological Modelling, Elsevier, vol. 447(C).
  14. Yerin Jung & Yoonsub Kim & Hwi-Soo Seol & Jong-Hyeon Lee & Jung-Hwan Kwon, 2021. "Spatial Uncertainty in Modeling Inhalation Exposure to Volatile Organic Compounds in Response to the Application of Consumer Spray Products," IJERPH, MDPI, vol. 18(10), pages 1-11, May.
  15. Tonatiuh Barrientos-Gutierrez & Rodrigo Zepeda-Tello & Eliane R Rodrigues & Arantxa Colchero-Aragonés & Rosalba Rojas-Martínez & Eduardo Lazcano-Ponce & Mauricio Hernández-Ávila & Juan Rivera-Dommarco, 2017. "Expected population weight and diabetes impact of the 1-peso-per-litre tax to sugar sweetened beverages in Mexico," PLOS ONE, Public Library of Science, vol. 12(5), pages 1-15, May.
  16. Belém Barbosa & José Ramón Saura & Dag Bennett, 2024. "How do entrepreneurs perform digital marketing across the customer journey? A review and discussion of the main uses," The Journal of Technology Transfer, Springer, vol. 49(1), pages 69-103, February.
  17. Gregory L Watson & Di Xiong & Lu Zhang & Joseph A Zoller & John Shamshoian & Phillip Sundin & Teresa Bufford & Anne W Rimoin & Marc A Suchard & Christina M Ramirez, 2021. "Pandemic velocity: Forecasting COVID-19 in the US with a machine learning & Bayesian time series compartmental model," PLOS Computational Biology, Public Library of Science, vol. 17(3), pages 1-20, March.
  18. García, Oscar, 2017. "Cohort aggregation modelling for complex forest stands: Spruce–aspen mixtures in British Columbia," Ecological Modelling, Elsevier, vol. 343(C), pages 109-122.
  19. Jessica A Lee & Siavash Riazi & Shahla Nemati & Jannell V Bazurto & Andreas E Vasdekis & Benjamin J Ridenhour & Christopher H Remien & Christopher J Marx, 2019. "Microbial phenotypic heterogeneity in response to a metabolic toxin: Continuous, dynamically shifting distribution of formaldehyde tolerance in Methylobacterium extorquens populations," PLOS Genetics, Public Library of Science, vol. 15(11), pages 1-38, November.
  20. Bahi, Aya & Sauvage, Sabine & Payraudeau, Sylvain & Tournebize, Julien, 2023. "PESTIPOND: A descriptive model of pesticide fate in artificial ponds: I. Model development," Ecological Modelling, Elsevier, vol. 485(C).
  21. David Hoyle & Tariq Mehmood Aslam, 2017. "Generative mathematical modelling to demonstrate virtual simulations of neovascular age related macular degeneration," PLOS ONE, Public Library of Science, vol. 12(12), pages 1-12, December.
  22. Zadoki Tabo & Chester Kalinda & Lutz Breuer & Christian Albrecht, 2023. "Adapting Strategies for Effective Schistosomiasis Prevention: A Mathematical Modeling Approach," Mathematics, MDPI, vol. 11(12), pages 1-18, June.
  23. Turner, Rolf & Banerjee, Pradeep & Shahlori, Rayomand, 2014. "Optimal Asset Pricing," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 58(i11).
  24. Rose, Hannah & Wang, Tong & van Dijk, Jan & Morgan, Eric R., 2015. "GLOWORM-FL: A simulation model of the effects of climate and climate change on the free-living stages of gastro-intestinal nematode parasites of ruminants," Ecological Modelling, Elsevier, vol. 297(C), pages 232-245.
  25. Sabrina Simon & Marcos Amaku & Eduardo Massad, 2023. "The Burden of Yellow Fever on Migrating Humans through The Darién Gap, Adjacent Communities, and Primates’ Biodiversity," Challenges, MDPI, vol. 14(4), pages 1-11, December.
  26. Fatima-Zahra Jaouimaa & Daniel Dempsey & Suzanne Van Osch & Stephen Kinsella & Kevin Burke & Jason Wyse & James Sweeney, 2021. "An age-structured SEIR model for COVID-19 incidence in Dublin, Ireland with framework for evaluating health intervention cost," PLOS ONE, Public Library of Science, vol. 16(12), pages 1-25, December.
  27. Deslauriers, David & Heironimus, Laura B. & Chipps, Steven R., 2016. "Test of a foraging-bioenergetics model to evaluate growth dynamics of endangered pallid sturgeon (Scaphirhynchus albus)," Ecological Modelling, Elsevier, vol. 336(C), pages 1-12.
  28. Stahl, Gerhard & Wang, Shaohui & Wendt, Markus, 2011. "Validate Correlation of an ESG: Treasury Yields across," Hannover Economic Papers (HEP) dp-476, Leibniz Universität Hannover, Wirtschaftswissenschaftliche Fakultät.
  29. Wiriya Mahikul & Lisa J White & Kittiyod Poovorawan & Ngamphol Soonthornworasiri & Pataporn Sukontamarn & Phetsavanh Chanthavilay & Wirichada Pan-ngum & Graham F Medley, 2019. "A Population Dynamic Model to Assess the Diabetes Screening and Reporting Programs and Project the Burden of Undiagnosed Diabetes in Thailand," IJERPH, MDPI, vol. 16(12), pages 1-10, June.
  30. Chevallier, Damien & Mourrain, Baptiste & Girondot, Marc, 2020. "Modelling leatherback biphasic indeterminate growth using a modified Gompertz equation," Ecological Modelling, Elsevier, vol. 426(C).
  31. Overstall, Antony M. & Woods, David C. & Martin, Kieran J., 2019. "Bayesian prediction for physical models with application to the optimization of the synthesis of pharmaceutical products using chemical kinetics," Computational Statistics & Data Analysis, Elsevier, vol. 132(C), pages 126-142.
  32. Keitt, Timothy H., 2012. "Productivity, nutrient imbalance and fragility in coupled producer–decomposer systems," Ecological Modelling, Elsevier, vol. 245(C), pages 12-18.
  33. Serrouya, R. & Dickie, M. & DeMars, C. & Wittmann, M.J. & Boutin, S., 2020. "Predicting the effects of restoring linear features on woodland caribou populations," Ecological Modelling, Elsevier, vol. 416(C).
  34. Tom Shatwell & Jan Köhler & Andreas Nicklisch, 2014. "Temperature and Photoperiod Interactions with Phosphorus-Limited Growth and Competition of Two Diatoms," PLOS ONE, Public Library of Science, vol. 9(7), pages 1-15, July.
  35. Mohammadi, Hossein & Challenor, Peter & Goodfellow, Marc, 2019. "Emulating dynamic non-linear simulators using Gaussian processes," Computational Statistics & Data Analysis, Elsevier, vol. 139(C), pages 178-196.
  36. Littfinski, Tobias & Stricker, Max & Nettmann, Edith & Gehring, Tito & Hiegemann, Heinz & Krimmler, Stefan & Lübken, Manfred & Pant, Deepak & Wichern, Marc, 2022. "A generalized whole-cell model for wastewater-fed microbial fuel cells," Applied Energy, Elsevier, vol. 321(C).
  37. Martínez-López, Javier & Martínez-Fernández, Julia & Naimi, Babak & Carreño, María F. & Esteve, Miguel A., 2015. "An open-source spatio-dynamic wetland model of plant community responses to hydrological pressures," Ecological Modelling, Elsevier, vol. 306(C), pages 326-333.
  38. Venolia, Celeste T. & Lavaud, Romain & Green-Gavrielidis, Lindsay A. & Thornber, Carol & Humphries, Austin T., 2020. "Modeling the Growth of Sugar Kelp (Saccharina latissima) in Aquaculture Systems using Dynamic Energy Budget Theory," Ecological Modelling, Elsevier, vol. 430(C).
  39. Yan, Chuan & Zhang, Zhibin, 2018. "Dome-shaped transition between positive and negative interactions maintains higher persistence and biomass in more complex ecological networks," Ecological Modelling, Elsevier, vol. 370(C), pages 14-21.
  40. José Ulises Márquez Urbina & Graciela González Farías & L Leticia Ramírez Ramírez & D Iván Rodríguez González, 2022. "A multi-source global-local model for epidemic management," PLOS ONE, Public Library of Science, vol. 17(1), pages 1-26, January.
  41. Lecorvaisier, Florian & Pontier, Dominique & Soubeyrand, Benoît & Fouchet, David, 2024. "Using a dynamical model to study the impact of a toxoid vaccine on the evolution of a bacterium: The example of diphtheria," Ecological Modelling, Elsevier, vol. 487(C).
  42. Diane Lefaudeux & Supriya Sen & Kevin Jiang & Alexander Hoffmann, 2022. "Kinetics of mRNA nuclear export regulate innate immune response gene expression," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
  43. Balvinder Singh Gill & Vivek Jason Jayaraj & Sarbhan Singh & Sumarni Mohd Ghazali & Yoon Ling Cheong & Nuur Hafizah Md Iderus & Bala Murali Sundram & Tahir Bin Aris & Hishamshah Mohd Ibrahim & Boon Ha, 2020. "Modelling the Effectiveness of Epidemic Control Measures in Preventing the Transmission of COVID-19 in Malaysia," IJERPH, MDPI, vol. 17(15), pages 1-13, July.
  44. Carturan, Bruno S. & Siewe, Nourridine & Cobbold, Christina A. & Tyson, Rebecca C., 2023. "Bumble bee pollination and the wildflower/crop trade-off: When do wildflower enhancements improve crop yield?," Ecological Modelling, Elsevier, vol. 484(C).
  45. Benjamin M. Bolker & Matheus R. Grasselli & Emma Holmes, 2021. "Sensitivity analysis of an integrated climate-economic model," Papers 2103.06227, arXiv.org.
  46. Delgado Castillo, Ángela & van den Bergh, Jeroen C.J.M. & Savin, Ivan & Sarto i Monteys, Víctor, 2020. "Cost-benefit analysis of conservation policy: The red palm weevil in Catalonia, Spain," Ecological Economics, Elsevier, vol. 167(C).
  47. Akpoué, Kouadio Jean-Philippe & Barot, Sébastien & Raynaud, Xavier & Gignoux, Jacques, 2021. "Modeling the biomass allocation of tree resprout in a fire-prone savanna," Ecological Modelling, Elsevier, vol. 448(C).
  48. Cécile Cathalot & Erwan G. Roussel & Antoine Perhirin & Vanessa Creff & Jean-Pierre Donval & Vivien Guyader & Guillaume Roullet & Jonathan Gula & Christian Tamburini & Marc Garel & Anne Godfroy & Pier, 2021. "Hydrothermal plumes as hotspots for deep-ocean heterotrophic microbial biomass production," Nature Communications, Nature, vol. 12(1), pages 1-10, December.
  49. Husson, Bérengère & Sarrazin, Jozée & van Oevelen, Dick & Sarradin, Pierre-Marie & Soetaert, Karline & Menesguen, Alain, 2018. "Modelling the interactions of the hydrothermal mussel Bathymodiolus azoricus with vent fluid," Ecological Modelling, Elsevier, vol. 377(C), pages 35-50.
  50. Menezes, Jorge F.S. & Kotler, Burt P., 2019. "The generalized ideal free distribution model: Merging current ideal free distribution models into a central framework," Ecological Modelling, Elsevier, vol. 397(C), pages 47-54.
  51. Myka Harun Sarajan & Kahkashan Mahreen & Patrizio Vanella & Alexander Kuhlmann, 2024. "Impact of Demographic Developments and PCV13 Vaccination on the Future Burden of Pneumococcal Diseases in Germany—An Integrated Probabilistic Differential Equation Approach," Mathematics, MDPI, vol. 12(6), pages 1-21, March.
  52. Kai Yin & Anirban Mondal & Martial Ndeffo-Mbah & Paromita Banerjee & Qimin Huang & David Gurarie, 2022. "Bayesian Inference for COVID-19 Transmission Dynamics in India Using a Modified SEIR Model," Mathematics, MDPI, vol. 10(21), pages 1-18, October.
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