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Solving Differential Equations in R: Package deSolve

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  1. repec:plo:pcbi00:1005544 is not listed on IDEAS
  2. Karim, Md Aktar Ul & Bhagat, Supriya Ramdas & Bhowmick, Amiya Ranjan, 2022. "Empirical detection of parameter variation in growth curve models using interval specific estimators," Chaos, Solitons & Fractals, Elsevier, vol. 157(C).
  3. Lamonica, Dominique & Herbach, Ulysse & Orias, Frédéric & Clément, Bernard & Charles, Sandrine & Lopes, Christelle, 2016. "Mechanistic modelling of daphnid-algae dynamics within a laboratory microcosm," Ecological Modelling, Elsevier, vol. 320(C), pages 213-230.
  4. Tomar, Siddharth S. & Hua-Van, Aurélie & Le Rouzic, Arnaud, 2023. "A population genetics theory for piRNA-regulated transposable elements," Theoretical Population Biology, Elsevier, vol. 150(C), pages 1-13.
  5. Tonatiuh Barrientos-Gutierrez & Rodrigo Zepeda-Tello & Eliane R Rodrigues & Arantxa Colchero-Aragonés & Rosalba Rojas-Martínez & Eduardo Lazcano-Ponce & Mauricio Hernández-Ávila & Juan Rivera-Dommarco, 2017. "Expected population weight and diabetes impact of the 1-peso-per-litre tax to sugar sweetened beverages in Mexico," PLOS ONE, Public Library of Science, vol. 12(5), pages 1-15, May.
  6. Lucia Coscujuela Tarrero & Valeria Famà & Giacomo D’Andrea & Simone Maestri & Anna Polo & Stefano Biffo & Mattia Furlan & Mattia Pelizzola, 2024. "Nanodynamo quantifies subcellular RNA dynamics revealing extensive coupling between steps of the RNA life cycle," Nature Communications, Nature, vol. 15(1), pages 1-19, December.
  7. García, Oscar, 2017. "Cohort aggregation modelling for complex forest stands: Spruce–aspen mixtures in British Columbia," Ecological Modelling, Elsevier, vol. 343(C), pages 109-122.
  8. Jessica A Lee & Siavash Riazi & Shahla Nemati & Jannell V Bazurto & Andreas E Vasdekis & Benjamin J Ridenhour & Christopher H Remien & Christopher J Marx, 2019. "Microbial phenotypic heterogeneity in response to a metabolic toxin: Continuous, dynamically shifting distribution of formaldehyde tolerance in Methylobacterium extorquens populations," PLOS Genetics, Public Library of Science, vol. 15(11), pages 1-38, November.
  9. Bahi, Aya & Sauvage, Sabine & Payraudeau, Sylvain & Tournebize, Julien, 2023. "PESTIPOND: A descriptive model of pesticide fate in artificial ponds: I. Model development," Ecological Modelling, Elsevier, vol. 485(C).
  10. Zadoki Tabo & Chester Kalinda & Lutz Breuer & Christian Albrecht, 2023. "Adapting Strategies for Effective Schistosomiasis Prevention: A Mathematical Modeling Approach," Mathematics, MDPI, vol. 11(12), pages 1-18, June.
  11. Turner, Rolf & Banerjee, Pradeep & Shahlori, Rayomand, 2014. "Optimal Asset Pricing," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 58(i11).
  12. Rose, Hannah & Wang, Tong & van Dijk, Jan & Morgan, Eric R., 2015. "GLOWORM-FL: A simulation model of the effects of climate and climate change on the free-living stages of gastro-intestinal nematode parasites of ruminants," Ecological Modelling, Elsevier, vol. 297(C), pages 232-245.
  13. Sabrina Simon & Marcos Amaku & Eduardo Massad, 2023. "The Burden of Yellow Fever on Migrating Humans through The Darién Gap, Adjacent Communities, and Primates’ Biodiversity," Challenges, MDPI, vol. 14(4), pages 1-11, December.
  14. Fatima-Zahra Jaouimaa & Daniel Dempsey & Suzanne Van Osch & Stephen Kinsella & Kevin Burke & Jason Wyse & James Sweeney, 2021. "An age-structured SEIR model for COVID-19 incidence in Dublin, Ireland with framework for evaluating health intervention cost," PLOS ONE, Public Library of Science, vol. 16(12), pages 1-25, December.
  15. Stahl, Gerhard & Wang, Shaohui & Wendt, Markus, 2011. "Validate Correlation of an ESG: Treasury Yields across," Hannover Economic Papers (HEP) dp-476, Leibniz Universität Hannover, Wirtschaftswissenschaftliche Fakultät.
  16. Wiriya Mahikul & Lisa J White & Kittiyod Poovorawan & Ngamphol Soonthornworasiri & Pataporn Sukontamarn & Phetsavanh Chanthavilay & Wirichada Pan-ngum & Graham F Medley, 2019. "A Population Dynamic Model to Assess the Diabetes Screening and Reporting Programs and Project the Burden of Undiagnosed Diabetes in Thailand," IJERPH, MDPI, vol. 16(12), pages 1-10, June.
  17. Rolando Rubilar-Torrealba & Lisandro Fermin & Soledad Torres, 2025. "Modeling Maximum drawdown Records with Piecewise Deterministic Markov Processe in Capital Markets," Papers 2503.23221, arXiv.org.
  18. Keitt, Timothy H., 2012. "Productivity, nutrient imbalance and fragility in coupled producer–decomposer systems," Ecological Modelling, Elsevier, vol. 245(C), pages 12-18.
  19. Palmer, Miquel & Moro-Martínez, Irene & Tomàs-Ferrer, Joaquim & Grau, Amalia & López-Belluga, María Dolores & Herlin, Marine & Stavrakidis-Zachou, Orestis & Campos-Candela, Andrea, 2024. "Assessing between-individual variability in bioenergetics modelling: Opportunities, challenges, and potential applications," Ecological Modelling, Elsevier, vol. 498(C).
  20. Mariano Méndez-Suárez & Ignacio Danvila-del-Valle, 2023. "Negative Word of Mouth (NWOM) using Compartmental Epidemiological Models in Banking Digital Transformation," Contemporary Economics, University of Economics and Human Sciences in Warsaw., vol. 17(1), March.
  21. Tom Shatwell & Jan Köhler & Andreas Nicklisch, 2014. "Temperature and Photoperiod Interactions with Phosphorus-Limited Growth and Competition of Two Diatoms," PLOS ONE, Public Library of Science, vol. 9(7), pages 1-15, July.
  22. Mohammadi, Hossein & Challenor, Peter & Goodfellow, Marc, 2019. "Emulating dynamic non-linear simulators using Gaussian processes," Computational Statistics & Data Analysis, Elsevier, vol. 139(C), pages 178-196.
  23. Martínez-López, Javier & Martínez-Fernández, Julia & Naimi, Babak & Carreño, María F. & Esteve, Miguel A., 2015. "An open-source spatio-dynamic wetland model of plant community responses to hydrological pressures," Ecological Modelling, Elsevier, vol. 306(C), pages 326-333.
  24. José Ulises Márquez Urbina & Graciela González Farías & L Leticia Ramírez Ramírez & D Iván Rodríguez González, 2022. "A multi-source global-local model for epidemic management," PLOS ONE, Public Library of Science, vol. 17(1), pages 1-26, January.
  25. Balvinder Singh Gill & Vivek Jason Jayaraj & Sarbhan Singh & Sumarni Mohd Ghazali & Yoon Ling Cheong & Nuur Hafizah Md Iderus & Bala Murali Sundram & Tahir Bin Aris & Hishamshah Mohd Ibrahim & Boon Ha, 2020. "Modelling the Effectiveness of Epidemic Control Measures in Preventing the Transmission of COVID-19 in Malaysia," IJERPH, MDPI, vol. 17(15), pages 1-13, July.
  26. Carturan, Bruno S. & Siewe, Nourridine & Cobbold, Christina A. & Tyson, Rebecca C., 2023. "Bumble bee pollination and the wildflower/crop trade-off: When do wildflower enhancements improve crop yield?," Ecological Modelling, Elsevier, vol. 484(C).
  27. Akpoué, Kouadio Jean-Philippe & Barot, Sébastien & Raynaud, Xavier & Gignoux, Jacques, 2021. "Modeling the biomass allocation of tree resprout in a fire-prone savanna," Ecological Modelling, Elsevier, vol. 448(C).
  28. Husson, Bérengère & Sarrazin, Jozée & van Oevelen, Dick & Sarradin, Pierre-Marie & Soetaert, Karline & Menesguen, Alain, 2018. "Modelling the interactions of the hydrothermal mussel Bathymodiolus azoricus with vent fluid," Ecological Modelling, Elsevier, vol. 377(C), pages 35-50.
  29. Christian L Althaus & Beda Joos & Alan S Perelson & Huldrych F Günthard, 2014. "Quantifying the Turnover of Transcriptional Subclasses of HIV-1-Infected Cells," PLOS Computational Biology, Public Library of Science, vol. 10(10), pages 1-11, October.
  30. Bachirou O. Taddé & Hélène Jacqmin‐Gadda & Jean‐François Dartigues & Daniel Commenges & Cécile Proust‐Lima, 2020. "Dynamic modeling of multivariate dimensions and their temporal relationships using latent processes: Application to Alzheimer's disease," Biometrics, The International Biometric Society, vol. 76(3), pages 886-899, September.
  31. Takahashi, Daisuke & Sim, Seung-Woo & Park, Eun-Jin, 2019. "Colonial population dynamics of Spartina alterniflora," Ecological Modelling, Elsevier, vol. 395(C), pages 45-50.
  32. Schmitt, Walter & Bruns, Eric & Dollinger, Margit & Sowig, Peter, 2013. "Mechanistic TK/TD-model simulating the effect of growth inhibitors on Lemna populations," Ecological Modelling, Elsevier, vol. 255(C), pages 1-10.
  33. Jianbin Tan & Ye Shen & Yang Ge & Leonardo Martinez & Hui Huang, 2023. "Age‐related model for estimating the symptomatic and asymptomatic transmissibility of COVID‐19 patients," Biometrics, The International Biometric Society, vol. 79(3), pages 2525-2536, September.
  34. Win Min Han & Wiriya Mahikul & Thomas Pouplin & Saranath Lawpoolsri & Lisa J White & Wirichada Pan-Ngum, 2021. "Assessing the impacts of short-course multidrug-resistant tuberculosis treatment in the Southeast Asia Region using a mathematical modeling approach," PLOS ONE, Public Library of Science, vol. 16(3), pages 1-14, March.
  35. Gregor Kalinkat & Björn Christian Rall & Olivera Vucic-Pestic & Ulrich Brose, 2011. "The Allometry of Prey Preferences," PLOS ONE, Public Library of Science, vol. 6(10), pages 1-11, October.
  36. Moore, Christopher M. & Catella, Samantha A. & Abbott, Karen C., 2018. "Population dynamics of mutualism and intraspecific density dependence: How θ-logistic density dependence affects mutualistic positive feedback," Ecological Modelling, Elsevier, vol. 368(C), pages 191-197.
  37. Alex Root, 2019. "Mathematical Modeling of The Challenge to Detect Pancreatic Adenocarcinoma Early with Biomarkers," Challenges, MDPI, vol. 10(1), pages 1-15, April.
  38. Katin, Alexey & Giudice, Dario Del & Hall, Nathan S. & Paerl, Hans W. & Obenour, Daniel R., 2021. "Simulating algal dynamics within a Bayesian framework to evaluate controls on estuary productivity," Ecological Modelling, Elsevier, vol. 447(C).
  39. Yerin Jung & Yoonsub Kim & Hwi-Soo Seol & Jong-Hyeon Lee & Jung-Hwan Kwon, 2021. "Spatial Uncertainty in Modeling Inhalation Exposure to Volatile Organic Compounds in Response to the Application of Consumer Spray Products," IJERPH, MDPI, vol. 18(10), pages 1-11, May.
  40. Belém Barbosa & José Ramón Saura & Dag Bennett, 2024. "How do entrepreneurs perform digital marketing across the customer journey? A review and discussion of the main uses," The Journal of Technology Transfer, Springer, vol. 49(1), pages 69-103, February.
  41. Gregory L Watson & Di Xiong & Lu Zhang & Joseph A Zoller & John Shamshoian & Phillip Sundin & Teresa Bufford & Anne W Rimoin & Marc A Suchard & Christina M Ramirez, 2021. "Pandemic velocity: Forecasting COVID-19 in the US with a machine learning & Bayesian time series compartmental model," PLOS Computational Biology, Public Library of Science, vol. 17(3), pages 1-20, March.
  42. Gambaro, Nicola & Brito-Parada, Pablo & Glöser-Chahoud, Simon & Plancherel, Yves, 2025. "Simulating resource movements and markets: A continuous dynamical system with delays to model anthropogenic metal cycles," Resources Policy, Elsevier, vol. 103(C).
  43. David Hoyle & Tariq Mehmood Aslam, 2017. "Generative mathematical modelling to demonstrate virtual simulations of neovascular age related macular degeneration," PLOS ONE, Public Library of Science, vol. 12(12), pages 1-12, December.
  44. Elizabeth Goult & Laura Andrea Barrero Guevara & Michael Briga & Matthieu Domenech de Cellès, 2024. "Estimating the optimal age for infant measles vaccination," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
  45. repec:plo:pcbi00:1003039 is not listed on IDEAS
  46. White, Easton R. & Wulfing, Sophie, 2024. "Extreme events and coupled socio-ecological systems," Ecological Modelling, Elsevier, vol. 495(C).
  47. Deslauriers, David & Heironimus, Laura B. & Chipps, Steven R., 2016. "Test of a foraging-bioenergetics model to evaluate growth dynamics of endangered pallid sturgeon (Scaphirhynchus albus)," Ecological Modelling, Elsevier, vol. 336(C), pages 1-12.
  48. Moulin, Thibault & Perasso, Antoine & Gillet, François, 2018. "Modelling vegetation dynamics in managed grasslands: Responses to drivers depend on species richness," Ecological Modelling, Elsevier, vol. 374(C), pages 22-36.
  49. Chevallier, Damien & Mourrain, Baptiste & Girondot, Marc, 2020. "Modelling leatherback biphasic indeterminate growth using a modified Gompertz equation," Ecological Modelling, Elsevier, vol. 426(C).
  50. Debelgarric, Mélanie & Récapet, Charlotte, 2025. "Exploring physiological constraints on life-history traits using Dynamic Energy Budgets," Ecological Modelling, Elsevier, vol. 501(C).
  51. Overstall, Antony M. & Woods, David C. & Martin, Kieran J., 2019. "Bayesian prediction for physical models with application to the optimization of the synthesis of pharmaceutical products using chemical kinetics," Computational Statistics & Data Analysis, Elsevier, vol. 132(C), pages 126-142.
  52. Anne Meyer & Jay Weiker & Rory Meyer, 2023. "Laboratory testing and on-site storage are successful at mitigating the risk of release of foot-and-mouth disease virus via production of bull semen in the USA," PLOS ONE, Public Library of Science, vol. 18(11), pages 1-18, November.
  53. Serrouya, R. & Dickie, M. & DeMars, C. & Wittmann, M.J. & Boutin, S., 2020. "Predicting the effects of restoring linear features on woodland caribou populations," Ecological Modelling, Elsevier, vol. 416(C).
  54. Littfinski, Tobias & Stricker, Max & Nettmann, Edith & Gehring, Tito & Hiegemann, Heinz & Krimmler, Stefan & Lübken, Manfred & Pant, Deepak & Wichern, Marc, 2022. "A generalized whole-cell model for wastewater-fed microbial fuel cells," Applied Energy, Elsevier, vol. 321(C).
  55. Venolia, Celeste T. & Lavaud, Romain & Green-Gavrielidis, Lindsay A. & Thornber, Carol & Humphries, Austin T., 2020. "Modeling the Growth of Sugar Kelp (Saccharina latissima) in Aquaculture Systems using Dynamic Energy Budget Theory," Ecological Modelling, Elsevier, vol. 430(C).
  56. Yan, Chuan & Zhang, Zhibin, 2018. "Dome-shaped transition between positive and negative interactions maintains higher persistence and biomass in more complex ecological networks," Ecological Modelling, Elsevier, vol. 370(C), pages 14-21.
  57. Lecorvaisier, Florian & Pontier, Dominique & Soubeyrand, Benoît & Fouchet, David, 2024. "Using a dynamical model to study the impact of a toxoid vaccine on the evolution of a bacterium: The example of diphtheria," Ecological Modelling, Elsevier, vol. 487(C).
  58. Diane Lefaudeux & Supriya Sen & Kevin Jiang & Alexander Hoffmann, 2022. "Kinetics of mRNA nuclear export regulate innate immune response gene expression," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
  59. Benjamin M. Bolker & Matheus R. Grasselli & Emma Holmes, 2021. "Sensitivity analysis of an integrated climate-economic model," Papers 2103.06227, arXiv.org.
  60. Delgado Castillo, Ángela & van den Bergh, Jeroen C.J.M. & Savin, Ivan & Sarto i Monteys, Víctor, 2020. "Cost-benefit analysis of conservation policy: The red palm weevil in Catalonia, Spain," Ecological Economics, Elsevier, vol. 167(C).
  61. Cécile Cathalot & Erwan G. Roussel & Antoine Perhirin & Vanessa Creff & Jean-Pierre Donval & Vivien Guyader & Guillaume Roullet & Jonathan Gula & Christian Tamburini & Marc Garel & Anne Godfroy & Pier, 2021. "Hydrothermal plumes as hotspots for deep-ocean heterotrophic microbial biomass production," Nature Communications, Nature, vol. 12(1), pages 1-10, December.
  62. Menezes, Jorge F.S. & Kotler, Burt P., 2019. "The generalized ideal free distribution model: Merging current ideal free distribution models into a central framework," Ecological Modelling, Elsevier, vol. 397(C), pages 47-54.
  63. Myka Harun Sarajan & Kahkashan Mahreen & Patrizio Vanella & Alexander Kuhlmann, 2024. "Impact of Demographic Developments and PCV13 Vaccination on the Future Burden of Pneumococcal Diseases in Germany—An Integrated Probabilistic Differential Equation Approach," Mathematics, MDPI, vol. 12(6), pages 1-21, March.
  64. Kai Yin & Anirban Mondal & Martial Ndeffo-Mbah & Paromita Banerjee & Qimin Huang & David Gurarie, 2022. "Bayesian Inference for COVID-19 Transmission Dynamics in India Using a Modified SEIR Model," Mathematics, MDPI, vol. 10(21), pages 1-18, October.
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