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PLOS Pathogens

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Content

April 2025, Volume 21, Issue 4

1-19 The molecular basis for DNA-binding by competence T4P is distinct in a representative Gram-positive and Gram-negative species
by Nicholas D Christman & Ankur B Dalia

March 2025, Volume 21, Issue 3

1-23 Selection and characterization of a broadly neutralizing class of HCV anti-E2 VH1-69 antibodies
by Andreas Soerensen & Filip Popovic & Christina Holmboe Olesen & Blanca Lopez Mendez & Brian Lohse & Zhaochun Chen & Patrizia Farci & Robert H Purcell & Harvey J Alter & Lea Klingenberg Barfod & Jens Bukh & Jannick Prentoe

December 2024, Volume 20, Issue 12

1-22 TNF-α exacerbates SARS-CoV-2 infection by stimulating CXCL1 production from macrophages
by Moe Kobayashi & Nene Kobayashi & Kyoka Deguchi & Seira Omori & Minami Nagai & Ryutaro Fukui & Isaiah Song & Shinji Fukuda & Kensuke Miyake & Takeshi Ichinohe
1-31 Polyfunctionality and breadth of HIV-1 antibodies are associated with delayed disease progression
by Marloes Grobben & Margreet Bakker & Angela I Schriek & Liesbeth JJ Levels & Jeffrey C Umotoy & Khadija Tejjani & Mariëlle J van Breemen & Ryan N Lin & Steven W de Taeye & Gabriel Ozorowski & Neeltje A Kootstra & Andrew B Ward & Stephen J Kent & P Mark Hogarth & Bruce D Wines & Rogier W Sanders & Amy W Chung & Marit J van Gils

October 2024, Volume 20, Issue 10

1-21 High phenotypic diversity correlated with genomic variation across the European Batrachochytrium salamandrivorans epizootic
by Moira Kelly & Christina A Cuomo & Wouter Beukema & Salvador Carranza & Jesse Erens & Marleen Foubert & Zhimin Li & Stefan Lötters & Vanessa Schulz & Sebastian Steinfartz & Sarah Van Praet & Michael Veith & Frank Pasmans & An Martel

September 2024, Volume 20, Issue 9

1-24 Enhanced quantitation of pathological α-synuclein in patient biospecimens by RT-QuIC seed amplification assays
by Ankit Srivastava & Qinlu Wang & Christina D Orrù & Manel Fernandez & Yaroslau Compta & Bernardino Ghetti & Gianluigi Zanusso & Wen-Quan Zou & Byron Caughey & Catherine A A Beauchemin
1-32 Release of P-TEFb from the Super Elongation Complex promotes HIV-1 latency reversal
by William J Cisneros & Shimaa H A Soliman & Miriam Walter & Lacy M Simons & Daphne Cornish & Simone De Fabritiis & Ariel W Halle & Eun-Young Kim & Steven M Wolinsky & Ramon Lorenzo-Redondo & Ali Shilatifard & Judd F Hultquist

August 2024, Volume 20, Issue 8

1-7 Data alchemy, from lab to insight: Transforming in vivo experiments into data science gold
by Troy J Kieran & Taronna R Maines & Jessica A Belser

July 2024, Volume 20, Issue 7

1-23 Influenza A viral burst size from thousands of infected single cells using droplet quantitative PCR (dqPCR)
by Geoffrey K Zath & Mallory M Thomas & Emma K Loveday & Dimitri A Bikos & Steven Sanche & Ruian Ke & Christopher B Brooke & Connie B Chang

June 2024, Volume 20, Issue 6

1-25 Zinc-finger (ZiF) fold secreted effectors form a functionally diverse family across lineages of the blast fungus Magnaporthe oryzae
by Juan Carlos De la Concepcion & Thorsten Langner & Koki Fujisaki & Xia Yan & Vincent Were & Anson Ho Ching Lam & Indira Saado & Helen J Brabham & Joe Win & Kentaro Yoshida & Nicholas J Talbot & Ryohei Terauchi & Sophien Kamoun & Mark J Banfield
1-27 IMD-mediated innate immune priming increases Drosophila survival and reduces pathogen transmission
by Arun Prakash & Florence Fenner & Biswajit Shit & Tiina S Salminen & Katy M Monteith & Imroze Khan & Pedro F Vale
1-28 CD56-mediated activation of human natural killer cells is triggered by Aspergillus fumigatus galactosaminogalactan
by Linda Heilig & Fariha Natasha & Nora Trinks & Vishukumar Aimanianda & Sarah Sze Wah Wong & Thierry Fontaine & Ulrich Terpitz & Lea Strobel & François Le Mauff & Donald C Sheppard & Sascha Schäuble & Oliver Kurzai & Kerstin Hünniger & Esther Weiss & Mario Vargas & P Lynne Howell & Gianni Panagiotou & Sebastian Wurster & Hermann Einsele & Juergen Loeffler

May 2024, Volume 20, Issue 5

1-19 Meta-analysis of Epstein-Barr virus genomes in Southern Chinese identifies genetic variants and high risk viral lineage associated with nasopharyngeal carcinoma
by Ka Wo Wong & Kwai Fung Hui & Ki Pui Lam & Dora Lai-wan Kwong & Maria Li Lung & Wanling Yang & Alan K S Chiang

April 2024, Volume 20, Issue 4

1-19 Mathematical models of drug-resistant tuberculosis lack bacterial heterogeneity: A systematic review
by Naomi M Fuller & Christopher F McQuaid & Martin J Harker & Chathika K Weerasuriya & Timothy D McHugh & Gwenan M Knight
1-23 Beyond the VSG layer: Exploring the role of intrinsic disorder in the invariant surface glycoproteins of African trypanosomes
by Hagen Sülzen & Alexander N Volkov & Rob Geens & Farnaz Zahedifard & Benoit Stijlemans & Martin Zoltner & Stefan Magez & Yann G-J Sterckx & Sebastian Zoll
1-24 Small RNA SmsR1 modulates acidogenicity and cariogenic virulence by affecting protein acetylation in Streptococcus mutans
by Jing Li & Qizhao Ma & Jun Huang & Yaqi Liu & Jing Zhou & Shuxing Yu & Qiong Zhang & Yongwang Lin & Lingyun Wang & Jing Zou & Yuqing Li
1-26 Dynamic changes of Bacterial Microbiomes in Oropharynx during Infection and Recovery of COVID-19 Omicron Variant
by Guangying Cui & Ying Sun & Yawen Zou & Ranran Sun & Yanxia Gao & Xiaorui Liu & Yongjian Zhou & Donghua Zhang & Xueqing Wang & Yonghong Li & Liwen Liu & Guizhen Zhang & Benchen Rao & Zujiang Yu & Zhigang Ren
1-26 The adaptive immune response to Trichuris in wild versus laboratory mice: An established model system in context
by Iris Mair & Jonathan Fenn & Andrew Wolfenden & Ann E Lowe & Alex Bennett & Andrew Muir & Jacob Thompson & Olive Dieumerci & Larisa Logunova & Susanne Shultz & Janette E Bradley & Kathryn J Else
1-28 Investigating the dose-dependency of the midgut escape barrier using a mechanistic model of within-mosquito dengue virus population dynamics
by Rebecca M Johnson & Isaac J Stopard & Helen M Byrne & Philip M Armstrong & Douglas E Brackney & Ben Lambert
1-37 Lineage frequency time series reveal elevated levels of genetic drift in SARS-CoV-2 transmission in England
by QinQin Yu & Joao A Ascensao & Takashi Okada & The COVID-19 Genomics UK (COG-UK) Consortium & Olivia Boyd & Erik Volz & Oskar Hallatschek
1-39 Predicting the presence of infectious virus from PCR data: A meta-analysis of SARS-CoV-2 in non-human primates
by Celine E Snedden & James O Lloyd-Smith

January 2024, Volume 20, Issue 1

1-22 Trained immunity in recurrent Staphylococcus aureus infection promotes bacterial persistence
by Xiao-Qi Lin & Zhen-Zhen Liu & Cheng-Kai Zhou & Liang Zhang & Yu Gao & Xue-Yue Luo & Jian-Gang Zhang & Wei Chen & Yong-Jun Yang

December 2023, Volume 19, Issue 12

1-24 Regulation of human neutrophil IL-1β secretion induced by Escherichia coli O157:H7 responsible for hemolytic uremic syndrome
by Florencia Sabbione & Irene Angelica Keitelman & Carolina Maiumi Shiromizu & Alexia Vereertbrugghen & Douglas Vera Aguilar & Paolo Nahuel Rubatto Birri & Manuela Pizzano & María Victoria Ramos & Federico Fuentes & Lucas Saposnik & Agostina Cernutto & Juliana Cassataro & Carolina Cristina Jancic & Jeremías Gaston Galletti & Marina Sandra Palermo & Analía Silvina Trevani

October 2023, Volume 19, Issue 10

1-8 Prevention of zoonotic spillover: From relying on response to reducing the risk at source
by Authored by the members of the One Health High-Level Expert Panel (OHHLEP) & Wanda Markotter & Thomas C Mettenleiter & Wiku B Adisasmito & Salama Almuhairi & Casey Barton Behravesh & Pépé Bilivogui & Salome A Bukachi & Natalia Casas & Natalia Cediel Becerra & Dominique F Charron & Abhishek Chaudhary & Janice R Ciacci Zanella & Andrew A Cunningham & Osman Dar & Nitish Debnath & Baptiste Dungu & Elmoubasher Farag & George F Gao & David T S Hayman & Margaret Khaitsa & Marion P G Koopmans & Catherine Machalaba & John S Mackenzie & Serge Morand & Vyacheslav Smolenskiy & Lei Zhou
1-32 The Aspergillus fumigatus UPR is variably activated across nutrient and host environments and is critical for the establishment of corneal infection
by Manali M Kamath & Jorge D Lightfoot & Emily M Adams & Ryan M Kiser & Becca L Wells & Kevin K Fuller

September 2023, Volume 19, Issue 9

1-23 Susceptibility to Zika virus in a Collaborative Cross mouse strain is induced by Irf3 deficiency in vitro but requires other variants in vivo
by Marie Bourdon & Caroline Manet & Laurine Conquet & Corentin Ramaugé Parra & Etienne Kornobis & Eliette Bonnefoy & Xavier Montagutelli

August 2023, Volume 19, Issue 8

1-24 Viral burden is associated with age, vaccination, and viral variant in a population-representative study of SARS-CoV-2 that accounts for time-since-infection-related sampling bias
by Helen R Fryer & Tanya Golubchik & Matthew Hall & Christophe Fraser & Robert Hinch & Luca Ferretti & Laura Thomson & Anel Nurtay & Lorenzo Pellis & Thomas House & George MacIntyre-Cockett & Amy Trebes & David Buck & Paolo Piazza & Angie Green & Lorne J Lonie & Darren Smith & Matthew Bashton & Matthew Crown & Andrew Nelson & Clare M McCann & Mohammed Adnan Tariq & Claire J Elstob & Rui Nunes Dos Santos & Zack Richards & Xin Xhang & Joseph Hawley & Mark R Lee & Priscilla Carrillo-Barragan & Isobel Chapman & Sarah Harthern-Flint & The COVID-19 Genomics UK (COG-UK) consortium & David Bonsall & Katrina A Lythgoe

July 2023, Volume 19, Issue 7

1-23 Novel integrated computational AMP discovery approaches highlight diversity in the helminth AMP repertoire
by Allister Irvine & Darrin McKenzie & Ciaran J McCoy & Robert L J Graham & Ciaren Graham & Sharon A Huws & Louise E Atkinson & Angela Mousley
1-25 The KDM6A-KMT2D-p300 axis regulates susceptibility to diverse coronaviruses by mediating viral receptor expression
by Jin Wei & Mia Madel Alfajaro & Wesley L Cai & Vincent R Graziano & Madison S Strine & Renata B Filler & Scott B Biering & Sylvia A Sarnik & Sonam Patel & Bridget L Menasche & Susan R Compton & Silvana Konermann & Patrick D Hsu & Robert C Orchard & Qin Yan & Craig B Wilen

June 2023, Volume 19, Issue 6

1-8 Advancing the central role of non-model biorepositories in predictive modeling of emerging pathogens
by Jocelyn P Colella & Marlon E Cobos & Irene Salinas & Joseph A Cook & The PICANTE Consortium
1-17 Neutralization profiles of HIV-1 viruses from the VRC01 Antibody Mediated Prevention (AMP) trials
by Nonhlanhla N Mkhize & Anna E J Yssel & Haajira Kaldine & Rebecca T van Dorsten & Amanda S Woodward Davis & Nicolas Beaume & David Matten & Bronwen Lambson & Tandile Modise & Prudence Kgagudi & Talita York & Dylan H Westfall & Elena E Giorgi & Bette Korber & Colin Anthony & Rutendo E Mapengo & Valerie Bekker & Elizabeth Domin & Amanda Eaton & Wenjie Deng & Allan DeCamp & Yunda Huang & Peter B Gilbert & Asanda Gwashu-Nyangiwe & Ruwayhida Thebus & Nonkululeko Ndabambi & Dieter Mielke & Nyaradzo Mgodi & Shelly Karuna & Srilatha Edupuganti & Michael S Seaman & Lawrence Corey & Myron S Cohen & John Hural & M Juliana McElrath & James I Mullins & David Montefiori & Penny L Moore & Carolyn Williamson & Lynn Morris

May 2023, Volume 19, Issue 5

1-29 α-Hemolysin promotes uropathogenic E. coli persistence in bladder epithelial cells via abrogating bacteria-harboring lysosome acidification
by Manisha Naskar & Viraj P Parekh & Mathew A Abraham & Zehra Alibasic & Min Jung Kim & Gyeongseo Suk & Joo Hwan Noh & Kwan Young Ko & Joonha Lee & Chungho Kim & Hana Yoon & Soman N Abraham & Hae Woong Choi

January 2023, Volume 19, Issue 1

1-8 Making the best of research investment in pathogens control through biocontrol. How is research correlated with agricultural microbial biological control product availability?
by Florența-Elena Helepciuc & Arpad Todor
1-22 Race and ethnicity: Risk factors for fungal infections?
by Jeffrey D Jenks & Chioma Inyang Aneke & Mohanad M Al-Obaidi & Matthias Egger & Lorena Garcia & Tommi Gaines & Martin Hoenigl & George R Thompson III
1-29 ROP39 is an Irgb10-specific parasite effector that modulates acute Toxoplasma gondii virulence
by Shishir Singh & Mateo Murillo-León & Niklas Sebastian Endres & Ailan Farid Arenas Soto & Jorge Enrique Gómez-Marín & Florence Melbert & Thirumala-Devi Kanneganti & Masahiro Yamamoto & Claudia Campos & Jonathan Charles Howard & Gregory Alan Taylor & Tobias Steinfeldt

October 2022, Volume 18, Issue 10

1-6 Pestilence and famine: Continuing down the vicious cycle with COVID-19
by Sudipta Hyder & Rethy K Chhem & Filip Claes & Erik Albert Karlsson

September 2022, Volume 18, Issue 9

1-33 A tRNA-derived fragment present in E. coli OMVs regulates host cell gene expression and proliferation
by Idrissa Diallo & Jeffrey Ho & Marine Lambert & Abderrahim Benmoussa & Zeinab Husseini & David Lalaouna & Eric Massé & Patrick Provost

July 2022, Volume 18, Issue 7

1-28 The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: The case of the spike A222V mutation
by Tiziana Ginex & Clara Marco-Marín & Miłosz Wieczór & Carlos P Mata & James Krieger & Paula Ruiz-Rodriguez & Maria Luisa López-Redondo & Clara Francés-Gómez & Roberto Melero & Carlos Óscar Sánchez-Sorzano & Marta Martínez & Nadine Gougeard & Alicia Forcada-Nadal & Sara Zamora-Caballero & Roberto Gozalbo-Rovira & Carla Sanz-Frasquet & Rocío Arranz & Jeronimo Bravo & Vicente Rubio & Alberto Marina & The IBV-Covid19-Pipeline & Ron Geller & Iñaki Comas & Carmen Gil & Mireia Coscolla & Modesto Orozco & José Luis Llácer & Jose-Maria Carazo

June 2022, Volume 18, Issue 6

1-20 Longitudinal kinetics of RBD+ antibodies in COVID-19 recovered patients over 14 months
by Tsuf Eyran & Anna Vaisman-Mentesh & David Taussig & Yael Dror & Ligal Aizik & Aya Kigel & Shai Rosenstein & Yael Bahar & Dor Ini & Ran Tur-Kaspa & Tatyana Kournos & Dana Marcoviciu & Dror Dicker & Yariv Wine

May 2022, Volume 18, Issue 5

1-20 Koala retrovirus load and non-A subtypes are associated with secondary disease among wild northern koalas
by Michaela D J Blyton & Michael Pyne & Paul Young & Keith Chappell
1-30 Ubiquitination of Ebola virus VP35 at lysine 309 regulates viral transcription and assembly
by Sarah van Tol & Birte Kalveram & Philipp A Ilinykh & Adam Ronk & Kai Huang & Leopoldo Aguilera-Aguirre & Preeti Bharaj & Adam Hage & Colm Atkins & Maria I Giraldo & Maki Wakamiya & Maria Gonzalez-Orozco & Abbey N Warren & Alexander Bukreyev & Alexander N Freiberg & Ricardo Rajsbaum
1-34 Regulation of epitope exposure in the gp41 membrane-proximal external region through interactions at the apex of HIV-1 Env
by Hannah M Schapiro & Mukta D Khasnis & Koree Ahn & Alexandra Karagiaridi & Stephanie Hayden & Maria E Cilento & Michael J Root

April 2022, Volume 18, Issue 4

1-31 Polyamine biosynthesis and eIF5A hypusination are modulated by the DNA tumor virus KSHV and promote KSHV viral infection
by Guillaume N Fiches & Zhenyu Wu & Dawei Zhou & Ayan Biswas & Tai-Wei Li & Weili Kong & Maxime Jean & Netty G Santoso & Jian Zhu

March 2022, Volume 18, Issue 3

1-25 Acid stress signals are integrated into the σB-dependent general stress response pathway via the stressosome in the food-borne pathogen Listeria monocytogenes
by Duarte N Guerreiro & M Graciela Pucciarelli & Teresa Tiensuu & Diana Gudynaite & Aoife Boyd & Jörgen Johansson & Francisco García-del Portillo & Conor P O’Byrne

December 2021, Volume 17, Issue 12

1-20 Infection-induced chromatin modifications facilitate translocation of herpes simplex virus capsids to the inner nuclear membrane
by Vesa Aho & Sami Salminen & Salla Mattola & Alka Gupta & Felix Flomm & Beate Sodeik & Jens B Bosse & Maija Vihinen-Ranta

November 2021, Volume 17, Issue 11

1-28 Raman spectroscopic analysis of skin as a diagnostic tool for Human African Trypanosomiasis
by Alexandre Girard & Anneli Cooper & Samuel Mabbott & Barbara Bradley & Steven Asiala & Lauren Jamieson & Caroline Clucas & Paul Capewell & Francesco Marchesi & Matthew P Gibbins & Franziska Hentzschel & Matthias Marti & Juan F Quintana & Paul Garside & Karen Faulds & Annette MacLeod & Duncan Graham

September 2021, Volume 17, Issue 9

1-19 Quantifying transmission dynamics of acute hepatitis C virus infections in a heterogeneous population using sequence data
by Gonché Danesh & Victor Virlogeux & Christophe Ramière & Caroline Charre & Laurent Cotte & Samuel Alizon
1-28 The small acid-soluble proteins of Clostridioides difficile are important for UV resistance and serve as a check point for sporulation
by Hailee N Nerber & Joseph A Sorg

August 2021, Volume 17, Issue 8

1-17 Intranasal type I interferon treatment is beneficial only when administered before clinical signs onset in the SARS-CoV-2 hamster model
by Pierre Bessière & Marine Wasniewski & Evelyne Picard-Meyer & Alexandre Servat & Thomas Figueroa & Charlotte Foret-Lucas & Amelia Coggon & Sandrine Lesellier & Frank Boué & Nathan Cebron & Blandine Gausserès & Catherine Trumel & Gilles Foucras & Francisco J Salguero & Elodie Monchatre-Leroy & Romain Volmer

June 2021, Volume 17, Issue 6

1-18 Nonsterile immunity to cryptosporidiosis in infants is associated with mucosal IgA against the sporozoite and protection from malnutrition
by Mamun Kabir & Masud Alam & Uma Nayak & Tuhinur Arju & Biplob Hossain & Rubaiya Tarannum & Amena Khatun & Jennifer A White & Jennie Z Ma & Rashidul Haque & William A Petri Jr & Carol A Gilchrist
1-34 Single cell analysis of host response to helminth infection reveals the clonal breadth, heterogeneity, and tissue-specific programming of the responding CD4 + T cell repertoire
by Ivy K Brown & Nathan Dyjack & Mindy M Miller & Harsha Krovi & Cydney Rios & Rachel Woolaver & Laura Harmacek & Ting-Hui Tu & Brian P O’Connor & Thomas Danhorn & Brian Vestal & Laurent Gapin & Clemencia Pinilla & Max A Seibold & James Scott-Browne & Radleigh G Santos & R Lee Reinhardt

April 2021, Volume 17, Issue 4

1-21 Intraspecific variation in immune gene expression and heritable symbiont density
by Holly L Nichols & Elliott B Goldstein & Omid Saleh Ziabari & Benjamin J Parker

March 2021, Volume 17, Issue 3

1-23 Combining viral genetic and animal mobility network data to unravel peste des petits ruminants transmission dynamics in West Africa
by Arnaud Bataille & Habib Salami & Ismaila Seck & Modou Moustapha Lo & Aminata Ba & Mariame Diop & Baba Sall & Coumba Faye & Mbargou Lo & Lanceï Kaba & Youssouf Sidime & Mohamed Keyra & Alpha Oumar Sily Diallo & Mamadou Niang & Cheick Abou Kounta Sidibe & Amadou Sery & Martin Dakouo & Ahmed Bezeid El Mamy & Ahmed Salem El Arbi & Yahya Barry & Ekaterina Isselmou & Habiboullah Habiboullah & Abdellahi Salem Lella & Baba Doumbia & Mohamed Baba Gueya & Caroline Coste & Cécile Squarzoni Diaw & Olivier Kwiatek & Geneviève Libeau & Andrea Apolloni
1-34 Phosphatidic acid-mediated binding and mammalian cell internalization of the Vibrio cholerae cytotoxin MakA
by Aftab Nadeem & Athar Alam & Eric Toh & Si Lhyam Myint & Zia ur Rehman & Tao Liu & Marta Bally & Anna Arnqvist & Hui Wang & Jun Zhu & Karina Persson & Bernt Eric Uhlin & Sun Nyunt Wai

February 2021, Volume 17, Issue 2

1-10 Five key aspects of metaproteomics as a tool to understand functional interactions in host-associated microbiomes
by Fernanda Salvato & Robert L Hettich & Manuel Kleiner
1-20 Diverging patterns of introgression from Schistosoma bovis across S. haematobium African lineages
by Olivier Rey & Eve Toulza & Cristian Chaparro & Jean-François Allienne & Julien Kincaid-Smith & Eglantine Mathieu-Begné & Fiona Allan & David Rollinson & Bonnie L Webster & Jérôme Boissier

December 2020, Volume 16, Issue 12

1-31 Signal peptide of HIV-1 envelope modulates glycosylation impacting exposure of V1V2 and other epitopes
by Chitra Upadhyay & Roya Feyznezhad & Liwei Cao & Kun-Wei Chan & Kevin Liu & Weiming Yang & Hui Zhang & Jason Yolitz & James Arthos & Arthur Nadas & Xiang-Peng Kong & Susan Zolla-Pazner & Catarina E Hioe

November 2020, Volume 16, Issue 11

1-10 Maternal antibody interference contributes to reduced rotavirus vaccine efficacy in developing countries
by Claire E Otero & Stephanie N Langel & Maria Blasi & Sallie R Permar

July 2020, Volume 16, Issue 7

1-21 HMGB1 amplifies ILC2-induced type-2 inflammation and airway smooth muscle remodelling
by Zhixuan Loh & Jennifer Simpson & Ashik Ullah & Vivian Zhang & Wan J Gan & Jason P Lynch & Rhiannon B Werder & Al Amin Sikder & Katie Lane & Choon Boon Sim & Enzo Porrello & Stuart B Mazzone & Peter D Sly & Raymond J Steptoe & Kirsten M Spann & Maria B Sukkar & John W Upham & Simon Phipps

January 2020, Volume 16, Issue 1

1-2 Passing the Torch
by Grant McFadden
1-31 Targeting resident memory T cell immunity culminates in pulmonary and systemic protection against Brucella infection
by Hongbin Wang & Carol Hoffman & Xinghong Yang & Beata Clapp & David W Pascual

December 2019, Volume 15, Issue 12

1-26 Shigella sonnei infection of zebrafish reveals that O-antigen mediates neutrophil tolerance and dysentery incidence
by Vincenzo Torraca & Myrsini Kaforou & Jayne Watson & Gina M Duggan & Hazel Guerrero-Gutierrez & Sina Krokowski & Michael Hollinshead & Thomas B Clarke & Rafal J Mostowy & Gillian S Tomlinson & Vanessa Sancho-Shimizu & Abigail Clements & Serge Mostowy

August 2019, Volume 15, Issue 8

1-26 Dietary zinc and the control of Streptococcus pneumoniae infection
by Bart A Eijkelkamp & Jacqueline R Morey & Stephanie L Neville & Aimee Tan & Victoria G Pederick & Nerida Cole & Prashina P Singh & Cheryl-Lynn Y Ong & Raquel Gonzalez de Vega & David Clases & Bliss A Cunningham & Catherine E Hughes & Iain Comerford & Erin B Brazel & Jonathan J Whittall & Charles D Plumptre & Shaun R McColl & James C Paton & Alastair G McEwan & Philip A Doble & Christopher A McDevitt
1-30 Dermal and muscle fibroblasts and skeletal myofibers survive chikungunya virus infection and harbor persistent RNA
by Alissa R Young & Marissa C Locke & Lindsey E Cook & Bradley E Hiller & Rong Zhang & Matthew L Hedberg & Kristen J Monte & Deborah J Veis & Michael S Diamond & Deborah J Lenschow

July 2019, Volume 15, Issue 7

1-17 Inflammatory monocytes provide a niche for Salmonella expansion in the lumen of the inflamed intestine
by Patrick A McLaughlin & Julie A Bettke & Jason W Tam & Jesse Leeds & James B Bliska & Brian P Butler & Adrianus W M van der Velden

November 2018, Volume 14, Issue 11

1-26 Macrophage activation by IFN-γ triggers restriction of phagosomal copper from intracellular pathogens
by Qian Shen & Matthew J Beucler & Stephanie C Ray & Chad A Rappleye

September 2018, Volume 14, Issue 9

1-24 Longitudinal transcriptomic characterization of the immune response to acute hepatitis C virus infection in patients with spontaneous viral clearance
by Brad R Rosenberg & Marion Depla & Catherine A Freije & Denis Gaucher & Sabrina Mazouz & Maude Boisvert & Nathalie Bédard & Julie Bruneau & Charles M Rice & Naglaa H Shoukry
1-25 HLA-C downregulation by HIV-1 adapts to host HLA genotype
by Nathaniel D Bachtel & Gisele Umviligihozo & Suzanne Pickering & Talia M Mota & Hua Liang & Gregory Q Del Prete & Pramita Chatterjee & Guinevere Q Lee & Rasmi Thomas & Mark A Brockman & Stuart Neil & Mary Carrington & Bosco Bwana & David R Bangsberg & Jeffrey N Martin & Esper G Kallas & Camila S Donini & Natalia B Cerqueira & Una T O’Doherty & Beatrice H Hahn & R Brad Jones & Zabrina L Brumme & Douglas F Nixon & Richard Apps

August 2018, Volume 14, Issue 8

1-3 From chemistry to fruit flies: An unpredictable series of fortunate conversations
by Sara Cherry
1-28 The C. difficile clnRAB operon initiates adaptations to the host environment in response to LL-37
by Emily C Woods & Adrianne N Edwards & Kevin O Childress & Joshua B Jones & Shonna M McBride

July 2018, Volume 14, Issue 7

1-29 Heterogeneity in pneumolysin expression governs the fate of Streptococcus pneumoniae during blood-brain barrier trafficking
by Manalee Vishnu Surve & Smita Bhutda & Akshay Datey & Anjali Anil & Shalini Rawat & Athira Pushpakaran & Dipty Singh & Kwang Sik Kim & Dipshikha Chakravortty & Anirban Banerjee

May 2018, Volume 14, Issue 5

1-2 Omissions from a National Institute of Health (NIH) biosketch
by Alice Prince

December 2017, Volume 13, Issue 12

1-25 Lower temperatures reduce type I interferon activity and promote alphaviral arthritis
by Natalie A Prow & Bing Tang & Joy Gardner & Thuy T Le & Adam Taylor & Yee S Poo & Eri Nakayama & Thiago D C Hirata & Helder I Nakaya & Andrii Slonchak & Pamela Mukhopadhyay & Suresh Mahalingam & Wayne A Schroder & William Klimstra & Andreas Suhrbier

November 2017, Volume 13, Issue 11

1-3 Got herpes? (Yep, you probably do!)
by Eain A Murphy

October 2017, Volume 13, Issue 10

1-23 Single-cell analysis identifies cellular markers of the HIV permissive cell
by Sylvie Rato & Antonio Rausell & Miguel Muñoz & Amalio Telenti & Angela Ciuffi

July 2017, Volume 13, Issue 7

1-18 Treatment with integrase inhibitor suggests a new interpretation of HIV RNA decay curves that reveals a subset of cells with slow integration
by E Fabian Cardozo & Adriana Andrade & John W Mellors & Daniel R Kuritzkes & Alan S Perelson & Ruy M Ribeiro
1-23 Hijacking of the O-GlcNAcZYME complex by the HTLV-1 Tax oncoprotein facilitates viral transcription
by Damien Groussaud & Mostafa Khair & Armelle I Tollenaere & Laetitia Waast & Mei-Shiue Kuo & Marianne Mangeney & Christophe Martella & Yann Fardini & Solène Coste & Mouloud Souidi & Laurence Benit & Claudine Pique & Tarik Issad
1-35 Phosphorylation of the HIV-1 capsid by MELK triggers uncoating to promote viral cDNA synthesis
by Hiroaki Takeuchi & Hideki Saito & Takeshi Noda & Tadashi Miyamoto & Tomokazu Yoshinaga & Kazutaka Terahara & Hiroshi Ishii & Yasuko Tsunetsugu-Yokota & Shoji Yamaoka

June 2017, Volume 13, Issue 6

1-20 NS5A inhibitors unmask differences in functional replicase complex half-life between different hepatitis C virus strains
by Tiffany Benzine & Ryan Brandt & William C Lovell & Daisuke Yamane & Petra Neddermann & Raffaele De Francesco & Stanley M Lemon & Alan S Perelson & Ruian Ke & David R McGivern

May 2017, Volume 13, Issue 5

1-26 Mucosal fluid glycoprotein DMBT1 suppresses twitching motility and virulence of the opportunistic pathogen Pseudomonas aeruginosa
by Jianfang Li & Matteo M E Metruccio & David J Evans & Suzanne M J Fleiszig

February 2017, Volume 13, Issue 2

1-6 New Paradigms to Help Solve the Global Aquaculture Disease Crisis
by Grant D Stentiford & Kallaya Sritunyalucksana & Timothy W Flegel & Bryony A P Williams & Boonsirm Withyachumnarnkul & Orn Itsathitphaisarn & David Bass

January 2017, Volume 13, Issue 1

1-29 Mapping Polyclonal HIV-1 Antibody Responses via Next-Generation Neutralization Fingerprinting
by Nicole A Doria-Rose & Han R Altae-Tran & Ryan S Roark & Stephen D Schmidt & Matthew S Sutton & Mark K Louder & Gwo-Yu Chuang & Robert T Bailer & Valerie Cortez & Rui Kong & Krisha McKee & Sijy O’Dell & Felicia Wang & Salim S Abdool Karim & James M Binley & Mark Connors & Barton F Haynes & Malcolm A Martin & David C Montefiori & Lynn Morris & Julie Overbaugh & Peter D Kwong & John R Mascola & Ivelin S Georgiev

October 2016, Volume 12, Issue 10

1-3 Basic Research in Bacterial Pathogenesis: “What’s Your Job about, Exactly?”
by Isabelle Derré

September 2016, Volume 12, Issue 9

1-3 Sifting and Winnowing through Human Cytomegalovirus Lytic Replication and Latency
by Robert F Kalejta

July 2016, Volume 12, Issue 7

1-18 Preventing Vaccine-Derived Poliovirus Emergence during the Polio Endgame
by Margarita Pons-Salort & Cara C Burns & Hil Lyons & Isobel M Blake & Hamid Jafari & M Steven Oberste & Olen M Kew & Nicholas C Grassly

December 2015, Volume 11, Issue 12

1-36 Live Cell Analysis and Mathematical Modeling Identify Determinants of Attenuation of Dengue Virus 2’-O-Methylation Mutant
by Bianca Schmid & Melanie Rinas & Alessia Ruggieri & Eliana Gisela Acosta & Marie Bartenschlager & Antje Reuter & Wolfgang Fischl & Nathalie Harder & Jan-Philip Bergeest & Michael Flossdorf & Karl Rohr & Thomas Höfer & Ralf Bartenschlager

October 2015, Volume 11, Issue 10

1-5 Effectively Communicating the Uncertainties Surrounding Ebola Virus Transmission
by Andy Kilianski & Nicholas G Evans
1-27 Structure Analysis Uncovers a Highly Diverse but Structurally Conserved Effector Family in Phytopathogenic Fungi
by Karine de Guillen & Diana Ortiz-Vallejo & Jérome Gracy & Elisabeth Fournier & Thomas Kroj & André Padilla

September 2015, Volume 11, Issue 9

1-3 Here I Am, Despite Myself
by Glenn Rall

August 2015, Volume 11, Issue 8

1-14 Parsimonious Determination of the Optimal Infectious Dose of a Pathogen for Nonhuman Primate Models
by Mario Roederer

July 2015, Volume 11, Issue 7

1-34 Capacity of Broadly Neutralizing Antibodies to Inhibit HIV-1 Cell-Cell Transmission Is Strain- and Epitope-Dependent
by Lucia Reh & Carsten Magnus & Merle Schanz & Jacqueline Weber & Therese Uhr & Peter Rusert & Alexandra Trkola

June 2015, Volume 11, Issue 6

1-1 Introducing “Research Matters”
by Grant McFadden & Kasturi Haldar
1-2 The Curious Road from Basic Pathogen Research to Clinical Translation
by Grant McFadden

May 2015, Volume 11, Issue 5

1-6 Systems Biology for Biologists
by Rachel A Hillmer

April 2015, Volume 11, Issue 4

1-20 Prospective Large-Scale Field Study Generates Predictive Model Identifying Major Contributors to Colony Losses
by Merav Gleit Kielmanowicz & Alex Inberg & Inbar Maayan Lerner & Yael Golani & Nicholas Brown & Catherine Louise Turner & Gerald J R Hayes & Joan M Ballam

March 2015, Volume 11, Issue 3

1-23 Characterization of CD8 + T Cell Differentiation following SIVΔnef Vaccination by Transcription Factor Expression Profiling
by James M Billingsley & Premeela A Rajakumar & Michelle A Connole & Nadine C Salisch & Sama Adnan & Yury V Kuzmichev & Henoch S Hong & R Keith Reeves & Hyung-joo Kang & Wenjun Li & Qingsheng Li & Ashley T Haase & R Paul Johnson

February 2015, Volume 11, Issue 2

1-14 High Heritability Is Compatible with the Broad Distribution of Set Point Viral Load in HIV Carriers
by Sebastian Bonhoeffer & Christophe Fraser & Gabriel E Leventhal
1-17 Phage-mediated Dispersal of Biofilm and Distribution of Bacterial Virulence Genes Is Induced by Quorum Sensing
by Friederike S Rossmann & Tomas Racek & Dominique Wobser & Jacek Puchalka & Elaine M Rabener & Matthias Reiger & Antoni P A Hendrickx & Ann-Kristin Diederich & Kirsten Jung & Christoph Klein & Johannes Huebner

January 2015, Volume 11, Issue 1

1-27 Chronic Filarial Infection Provides Protection against Bacterial Sepsis by Functionally Reprogramming Macrophages
by Fabian Gondorf & Afiat Berbudi & Benedikt C Buerfent & Jesuthas Ajendra & Dominique Bloemker & Sabine Specht & David Schmidt & Anna-Lena Neumann & Laura E Layland & Achim Hoerauf & Marc P Hübner

August 2014, Volume 10, Issue 8

1-15 On the Front Line: Quantitative Virus Dynamics in Honeybee (Apis mellifera L.) Colonies along a New Expansion Front of the Parasite Varroa destructor
by Fanny Mondet & Joachim R de Miranda & Andre Kretzschmar & Yves Le Conte & Alison R Mercer

June 2014, Volume 10, Issue 6

1-13 Ly6C high Monocytes Become Alternatively Activated Macrophages in Schistosome Granulomas with Help from CD4+ Cells
by Natasha M Girgis & Uma Mahesh Gundra & Lauren N Ward & Mynthia Cabrera & Ute Frevert & P'ng Loke
1-13 Cycling Empirical Antibiotic Therapy in Hospitals: Meta-Analysis and Models
by Pia Abel zur Wiesch & Roger Kouyos & Sören Abel & Wolfgang Viechtbauer & Sebastian Bonhoeffer

May 2014, Volume 10, Issue 5

1-13 A Nasal Epithelial Receptor for Staphylococcus aureus WTA Governs Adhesion to Epithelial Cells and Modulates Nasal Colonization
by Stefanie Baur & Maren Rautenberg & Manuela Faulstich & Timo Grau & Yannik Severin & Clemens Unger & Wolfgang H Hoffmann & Thomas Rudel & Ingo B Autenrieth & Christopher Weidenmaier

April 2014, Volume 10, Issue 4

1-12 Regulation of Human T-Lymphotropic Virus Type I Latency and Reactivation by HBZ and Rex
by Subha Philip & Muhammad Atif Zahoor & Huijun Zhi & Yik-Khuan Ho & Chou-Zen Giam

March 2014, Volume 10, Issue 3

1-3 A Missing Dimension in Measures of Vaccination Impacts
by M Gabriela M Gomes & Marc Lipsitch & Andrew R Wargo & Gael Kurath & Carlota Rebelo & Graham F Medley & Antonio Coutinho

February 2014, Volume 10, Issue 2

1-12 Substrate-Induced Unfolding of Protein Disulfide Isomerase Displaces the Cholera Toxin A1 Subunit from Its Holotoxin
by Michael Taylor & Helen Burress & Tuhina Banerjee & Supriyo Ray & David Curtis & Suren A Tatulian & Ken Teter
1-17 Structure of the Membrane Anchor of Pestivirus Glycoprotein Erns, a Long Tilted Amphipathic Helix
by Daniel Aberle & Claudia Muhle-Goll & Jochen Bürck & Moritz Wolf & Sabine Reißer & Burkhard Luy & Wolfgang Wenzel & Anne S Ulrich & Gregor Meyers

September 2013, Volume 9, Issue 9

1-12 Lymph Node Colonization Dynamics after Oral Salmonella Typhimurium Infection in Mice
by Patrick Kaiser & Emma Slack & Andrew J Grant & Wolf-Dietrich Hardt & Roland R Regoes

August 2013, Volume 9, Issue 8

1-18 Quantitative Models of the Dose-Response and Time Course of Inhalational Anthrax in Humans
by Damon J A Toth & Adi V Gundlapalli & Wiley A Schell & Kenneth Bulmahn & Thomas E Walton & Christopher W Woods & Catherine Coghill & Frank Gallegos & Matthew H Samore & Frederick R Adler

July 2013, Volume 9, Issue 7

1-15 Ethnic Variation in Inflammatory Profile in Tuberculosis
by Anna K Coussens & Robert J Wilkinson & Vladyslav Nikolayevskyy & Paul T Elkington & Yasmeen Hanifa & Kamrul Islam & Peter M Timms & Graham H Bothamley & Alleyna P Claxton & Geoffrey E Packe & Mathina Darmalingam & Robert N Davidson & Heather J Milburn & Lucy V Baker & Richard D Barker & Francis A Drobniewski & Charles A Mein & Leena Bhaw-Rosun & Rosamond A Nuamah & Christopher J Griffiths & Adrian R Martineau

June 2013, Volume 9, Issue 6

1-14 HIV-1 Vaccine-Induced T-Cell Reponses Cluster in Epitope Hotspots that Differ from Those Induced in Natural Infection with HIV-1
by Tomer Hertz & Hasan Ahmed & David P Friedrich & Danilo R Casimiro & Steven G Self & Lawrence Corey & M Juliana McElrath & Susan Buchbinder & Helen Horton & Nicole Frahm & Michael N Robertson & Barney S Graham & Peter Gilbert

April 2013, Volume 9, Issue 4

1-14 Viral Uncoating Is Directional: Exit of the Genomic RNA in a Common Cold Virus Starts with the Poly-(A) Tail at the 3′-End
by Shushan Harutyunyan & Mohit Kumar & Arthur Sedivy & Xavier Subirats & Heinrich Kowalski & Gottfried Köhler & Dieter Blaas

December 2012, Volume 8, Issue 12

1-11 The Polyfunctionality of Human Memory CD8+ T Cells Elicited by Acute and Chronic Virus Infections Is Not Influenced by Age
by Alina Lelic & Chris P Verschoor & Mario Ventresca & Robin Parsons & Carole Evelegh & Dawn Bowdish & Michael R Betts & Mark B Loeb & Jonathan L Bramson

July 2012, Volume 8, Issue 7

1-15 Structure-guided Alterations of the gp41-directed HIV-1 Broadly Neutralizing Antibody 2F5 Reveal New Properties Regarding its Neutralizing Function
by Javier Guenaga & Richard T Wyatt

April 2012, Volume 8, Issue 4

1-4 The Problem of Auto-Correlation in Parasitology
by Laura C Pollitt & Sarah E Reece & Nicole Mideo & Daniel H Nussey & Nick Colegrave

January 2012, Volume 8, Issue 1

1-4 Sequence Divergent RXLR Effectors Share a Structural Fold Conserved across Plant Pathogenic Oomycete Species
by Joe Win & Ksenia V Krasileva & Sophien Kamoun & Ken Shirasu & Brian J Staskawicz & Mark J Banfield

November 2011, Volume 7, Issue 11

1-5 Assessing Predicted HIV-1 Replicative Capacity in a Clinical Setting
by Roger D Kouyos & Viktor von Wyl & Trevor Hinkley & Christos J Petropoulos & Mojgan Haddad & Jeannette M Whitcomb & Jürg Böni & Sabine Yerly & Cristina Cellerai & Thomas Klimkait & Huldrych F Günthard & Sebastian Bonhoeffer & the Swiss HIV Cohort Study

September 2011, Volume 7, Issue 9

1-11 Rapid and Efficient Clearance of Blood-borne Virus by Liver Sinusoidal Endothelium
by Latha P Ganesan & Sudhasri Mohanty & Jonghan Kim & K Reed Clark & John M Robinson & Clark L Anderson

August 2011, Volume 7, Issue 8

1-16 A Novel Persistence Associated EBV miRNA Expression Profile Is Disrupted in Neoplasia
by Jin Qiu & Katherine Cosmopoulos & Michiel Pegtel & Erik Hopmans & Paul Murray & Jaap Middeldorp & Michael Shapiro & David A Thorley-Lawson

January 2011, Volume 7, Issue 1

1-17 A Helminth Immunomodulator Exploits Host Signaling Events to Regulate Cytokine Production in Macrophages
by Christian Klotz & Thomas Ziegler & Ana Sofia Figueiredo & Sebastian Rausch & Matthew R Hepworth & Nadja Obsivac & Christine Sers & Roland Lang & Peter Hammerstein & Richard Lucius & Susanne Hartmann

November 2010, Volume 6, Issue 11

1-12 Modelling the Evolution and Spread of HIV Immune Escape Mutants
by Helen R Fryer & John Frater & Anna Duda & Mick G Roberts & The SPARTAC Trial Investigators & Rodney E Phillips & Angela R McLean
1-13 Glycosylation Focuses Sequence Variation in the Influenza A Virus H1 Hemagglutinin Globular Domain
by Suman R Das & Pere Puigbò & Scott E Hensley & Darrell E Hurt & Jack R Bennink & Jonathan W Yewdell

July 2010, Volume 6, Issue 7

1-15 A Systems Immunology Approach to Plasmacytoid Dendritic Cell Function in Cytopathic Virus Infections
by Gennady Bocharov & Roland Züst & Luisa Cervantes-Barragan & Tatyana Luzyanina & Egor Chiglintsev & Valery A Chereshnev & Volker Thiel & Burkhard Ludewig

March 2010, Volume 6, Issue 3

1-13 The Essentials of Protein Import in the Degenerate Mitochondrion of Entamoeba histolytica
by Pavel Dolezal & Michael J Dagley & Maya Kono & Peter Wolynec & Vladimir A Likić & Jung Hock Foo & Miroslava Sedinová & Jan Tachezy & Anna Bachmann & Iris Bruchhaus & Trevor Lithgow
1-14 Serological Profiling of a Candida albicans Protein Microarray Reveals Permanent Host-Pathogen Interplay and Stage-Specific Responses during Candidemia
by A Brian Mochon & Jin Ye & Matthew A Kayala & John R Wingard & Cornelius J Clancy & M Hong Nguyen & Philip Felgner & Pierre Baldi & Haoping Liu

July 2009, Volume 5, Issue 7

1-10 Differential Tolerance to Direct and Indirect Density-Dependent Costs of Viral Infection in Arabidopsis thaliana
by Israel Pagán & Carlos Alonso-Blanco & Fernando García-Arenal
1-12 Genome-Scale Identification of Legionella pneumophila Effectors Using a Machine Learning Approach
by David Burstein & Tal Zusman & Elena Degtyar & Ram Viner & Gil Segal & Tal Pupko

May 2009, Volume 5, Issue 5

1-8 Increasing Clinical Virulence in Two Decades of the Italian HIV Epidemic
by Viktor Müller & Franco Maggiolo & Fredy Suter & Nicoletta Ladisa & Andrea De Luca & Andrea Antinori & Laura Sighinolfi & Eugenia Quiros-Roldan & Giampiero Carosi & Carlo Torti

April 2009, Volume 5, Issue 4

1-9 Likely Role of APOBEC3G-Mediated G-to-A Mutations in HIV-1 Evolution and Drug Resistance
by Patric Jern & Rebecca A Russell & Vinay K Pathak & John M Coffin

January 2009, Volume 5, Issue 1

1-13 Estimation of Transmission Parameters of H5N1 Avian Influenza Virus in Chickens
by Annemarie Bouma & Ivo Claassen & Ketut Natih & Don Klinkenberg & Christl A Donnelly & Guus Koch & Michiel van Boven

October 2008, Volume 4, Issue 10

1-15 Transmission of Vibrio cholerae Is Antagonized by Lytic Phage and Entry into the Aquatic Environment
by Eric J Nelson & Ashrafuzzaman Chowdhury & James Flynn & Stefan Schild & Lori Bourassa & Yue Shao & Regina C LaRocque & Stephen B Calderwood & Firdausi Qadri & Andrew Camilli

April 2008, Volume 4, Issue 4

1-9 Histoplasma Requires SID1 , a Member of an Iron-Regulated Siderophore Gene Cluster, for Host Colonization
by Lena H Hwang & Jacob A Mayfield & Jasper Rine & Anita Sil

March 2008, Volume 4, Issue 3

1-10 HTLV-1 Integration into Transcriptionally Active Genomic Regions Is Associated with Proviral Expression and with HAM/TSP
by Kiran N Meekings & Jeremy Leipzig & Frederic D Bushman & Graham P Taylor & Charles R M Bangham

November 2007, Volume 3, Issue 11

1-15 Bradykinin B2 Receptors of Dendritic Cells, Acting as Sensors of Kinins Proteolytically Released by Trypanosoma cruzi, Are Critical for the Development of Protective Type-1 Responses
by Ana Carolina Monteiro & Verônica Schmitz & Alexandre Morrot & Luciana Barros de Arruda & Fnu Nagajyothi & Alessandra Granato & João B Pesquero & Werner Müller-Esterl & Herbert B Tanowitz & Julio Scharfstein

October 2007, Volume 3, Issue 10

1-19 Human CD4 + T Cell Epitopes from Vaccinia Virus Induced by Vaccination or Infection
by J Mauricio Calvo-Calle & Iwona Strug & Maria-Dorothea Nastke & Stephen P Baker & Lawrence J Stern

September 2007, Volume 3, Issue 9

1-15 T Cells Contain an RNase-Insensitive Inhibitor of APOBEC3G Deaminase Activity
by Beth K Thielen & Kevin C Klein & Lorne W Walker & Mary Rieck & Jane H Buckner & Garrett W Tomblingson & Jaisri R Lingappa

February 2007, Volume 3, Issue 2

1-16 Newly Synthesized APOBEC3G Is Incorporated into HIV Virions, Inhibited by HIV RNA, and Subsequently Activated by RNase H
by Vanessa B Soros & Wes Yonemoto & Warner C Greene

October 2005, Volume 1, Issue 2

1-3 Open-Access Science: A Necessity for Global Public Health
by Josefina Coloma & Eva Harris

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