IDEAS home Printed from https://ideas.repec.org/p/pra/mprapa/99165.html
   My bibliography  Save this paper

Bayesian Generalized Linear Mixed Effects Models Using Normal-Independent Distributions: Formulation and Applications

Author

Listed:
  • Adeniyi, Isaac Adeola

Abstract

A standard assumption is that the random effects of Generalized Linear Mixed Effects Models (GLMMs) follow the normal distribution. However, this assumption has been found to be quite unrealistic and sometimes too restrictive as revealed in many real-life situations. A common case of departures from normality includes the presence of outliers leading to heavy-tailed distributed random effects. This work, therefore, aims to develop a robust GLMM framework by replacing the normality assumption on the random effects by the distributions belonging to the Normal-Independent (NI) class. The resulting models are called the Normal-Independent GLMM (NI-GLMM). The four special cases of the NI class considered in these models’ formulations include the normal, Student-t, Slash and contaminated normal distributions. A full Bayesian technique was adopted for estimation and inference. A real-life data set on cotton bolls was used to demonstrate the performance of the proposed NI-GLMM methodology.

Suggested Citation

  • Adeniyi, Isaac Adeola, 2020. "Bayesian Generalized Linear Mixed Effects Models Using Normal-Independent Distributions: Formulation and Applications," MPRA Paper 99165, University Library of Munich, Germany.
  • Handle: RePEc:pra:mprapa:99165
    as

    Download full text from publisher

    File URL: https://mpra.ub.uni-muenchen.de/99165/1/MPRA_paper_99165.pdf
    File Function: original version
    Download Restriction: no

    File URL: https://mpra.ub.uni-muenchen.de/99165/8/MPRA_paper_99165.pdf
    File Function: original version
    Download Restriction: no
    ---><---

    References listed on IDEAS

    as
    1. Osiewalski, Jacek & Steel, Mark F. J., 1993. "Robust bayesian inference in elliptical regression models," Journal of Econometrics, Elsevier, vol. 57(1-3), pages 345-363.
    2. Lachos, Victor H. & Castro, Luis M. & Dey, Dipak K., 2013. "Bayesian inference in nonlinear mixed-effects models using normal independent distributions," Computational Statistics & Data Analysis, Elsevier, vol. 64(C), pages 237-252.
    3. A. Azzalini & A. Capitanio, 1999. "Statistical applications of the multivariate skew normal distribution," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 61(3), pages 579-602.
    4. Agresti, Alan & Caffo, Brian & Ohman-Strickland, Pamela, 2004. "Examples in which misspecification of a random effects distribution reduces efficiency, and possible remedies," Computational Statistics & Data Analysis, Elsevier, vol. 47(3), pages 639-653, October.
    5. Ye Li & Patrick Brown & Håvard Rue & Mustafa al‐Maini & Paul Fortin, 2012. "Spatial modelling of lupus incidence over 40 years with changes in census areas," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 61(1), pages 99-115, January.
    6. Germáan Rodríguez & Noreen Goldman, 1995. "An Assessment of Estimation Procedures for Multilevel Models with Binary Responses," Journal of the Royal Statistical Society Series A, Royal Statistical Society, vol. 158(1), pages 73-89, January.
    7. Jacek Osiewalski, 1999. "Bayesian analysis of nonlinear regression with equicorrelated elliptical errors," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 8(2), pages 339-344, December.
    8. Galit Shmueli & Thomas P. Minka & Joseph B. Kadane & Sharad Borle & Peter Boatwright, 2005. "A useful distribution for fitting discrete data: revival of the Conway–Maxwell–Poisson distribution," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 54(1), pages 127-142, January.
    9. Walmes Marques Zeviani & Paulo Justiniano Ribeiro & Wagner Hugo Bonat & Silvia Emiko Shimakura & Joel Augusto Muniz, 2014. "The Gamma-count distribution in the analysis of experimental underdispersed data," Journal of Applied Statistics, Taylor & Francis Journals, vol. 41(12), pages 2616-2626, December.
    10. Håvard Rue & Sara Martino & Nicolas Chopin, 2009. "Approximate Bayesian inference for latent Gaussian models by using integrated nested Laplace approximations," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 71(2), pages 319-392, April.
    11. Gallant, A Ronald & Nychka, Douglas W, 1987. "Semi-nonparametric Maximum Likelihood Estimation," Econometrica, Econometric Society, vol. 55(2), pages 363-390, March.
    12. Victor H. Lachos & Dipankar Bandyopadhyay & Dipak K. Dey, 2011. "Linear and Nonlinear Mixed-Effects Models for Censored HIV Viral Loads Using Normal/Independent Distributions," Biometrics, The International Biometric Society, vol. 67(4), pages 1594-1604, December.
    13. David J. Spiegelhalter & Nicola G. Best & Bradley P. Carlin & Angelika Van Der Linde, 2002. "Bayesian measures of model complexity and fit," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 64(4), pages 583-639, October.
    14. Huang Yangxin & Chen Ren & Dagne Getachew, 2011. "Simultaneous Bayesian Inference for Linear, Nonlinear and Semiparametric Mixed-Effects Models with Skew-Normality and Measurement Errors in Covariates," The International Journal of Biostatistics, De Gruyter, vol. 7(1), pages 1-28, January.
    15. Xiaohong Chen & Han Hong & Denis Nekipelov, 2011. "Nonlinear Models of Measurement Errors," Journal of Economic Literature, American Economic Association, vol. 49(4), pages 901-937, December.
    16. Osorio, Felipe & Paula, Gilberto A. & Galea, Manuel, 2007. "Assessment of local influence in elliptical linear models with longitudinal structure," Computational Statistics & Data Analysis, Elsevier, vol. 51(9), pages 4354-4368, May.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Lachos, Victor H. & Castro, Luis M. & Dey, Dipak K., 2013. "Bayesian inference in nonlinear mixed-effects models using normal independent distributions," Computational Statistics & Data Analysis, Elsevier, vol. 64(C), pages 237-252.
    2. Massimo Bilancia & Giacomo Demarinis, 2014. "Bayesian scanning of spatial disease rates with integrated nested Laplace approximation (INLA)," Statistical Methods & Applications, Springer;Società Italiana di Statistica, vol. 23(1), pages 71-94, March.
    3. Russo, Cibele M. & Paula, Gilberto A. & Aoki, Reiko, 2009. "Influence diagnostics in nonlinear mixed-effects elliptical models," Computational Statistics & Data Analysis, Elsevier, vol. 53(12), pages 4143-4156, October.
    4. Komárek, Arnost & Lesaffre, Emmanuel, 2008. "Generalized linear mixed model with a penalized Gaussian mixture as a random effects distribution," Computational Statistics & Data Analysis, Elsevier, vol. 52(7), pages 3441-3458, March.
    5. Mayer Alvo & Jingrui Mu, 2023. "COVID-19 Data Analysis Using Bayesian Models and Nonparametric Geostatistical Models," Mathematics, MDPI, vol. 11(6), pages 1-13, March.
    6. Douglas R. M. Azevedo & Marcos O. Prates & Dipankar Bandyopadhyay, 2021. "MSPOCK: Alleviating Spatial Confounding in Multivariate Disease Mapping Models," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 26(3), pages 464-491, September.
    7. Barros, Michelli & Paula, Gilberto A. & Leiva, Víctor, 2009. "An R implementation for generalized Birnbaum-Saunders distributions," Computational Statistics & Data Analysis, Elsevier, vol. 53(4), pages 1511-1528, February.
    8. Chun Wang & Steven W. Nydick, 2020. "On Longitudinal Item Response Theory Models: A Didactic," Journal of Educational and Behavioral Statistics, , vol. 45(3), pages 339-368, June.
    9. Isabel Martínez-Pérez & Verónica González-Iglesias & Valentín Rodríguez Suárez & Ana Fernández-Somoano, 2021. "Spatial Distribution of Hospitalizations for Ischemic Heart Diseases in the Central Region of Asturias, Spain," IJERPH, MDPI, vol. 18(23), pages 1-10, November.
    10. Maike Tahden & Juliane Manitz & Klaus Baumgardt & Gerhard Fell & Thomas Kneib & Guido Hegasy, 2016. "Epidemiological and Ecological Characterization of the EHEC O104:H4 Outbreak in Hamburg, Germany, 2011," PLOS ONE, Public Library of Science, vol. 11(10), pages 1-19, October.
    11. Zhang, Shen & Liu, Xin & Tang, Jinjun & Cheng, Shaowu & Qi, Yong & Wang, Yinhai, 2018. "Spatio-temporal modeling of destination choice behavior through the Bayesian hierarchical approach," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 512(C), pages 537-551.
    12. Zhao, Qing & Boomer, G. Scott & Silverman, Emily & Fleming, Kathy, 2017. "Accounting for the temporal variation of spatial effect improves inference and projection of population dynamics models," Ecological Modelling, Elsevier, vol. 360(C), pages 252-259.
    13. Darren J. Mayne & Geoffrey G. Morgan & Bin B. Jalaludin & Adrian E. Bauman, 2018. "Does Walkability Contribute to Geographic Variation in Psychosocial Distress? A Spatial Analysis of 91,142 Members of the 45 and Up Study in Sydney, Australia," IJERPH, MDPI, vol. 15(2), pages 1-24, February.
    14. Zhou, Can & Jiao, Yan & Browder, Joan, 2019. "K-aggregated transformation of discrete distributions improves modeling count data with excess ones," Ecological Modelling, Elsevier, vol. 407(C), pages 1-1.
    15. White, Staci A. & Herbei, Radu, 2015. "A Monte Carlo approach to quantifying model error in Bayesian parameter estimation," Computational Statistics & Data Analysis, Elsevier, vol. 83(C), pages 168-181.
    16. Ferreira, Marco A.R. & Porter, Erica M. & Franck, Christopher T., 2021. "Fast and scalable computations for Gaussian hierarchical models with intrinsic conditional autoregressive spatial random effects," Computational Statistics & Data Analysis, Elsevier, vol. 162(C).
    17. Faustin Habyarimana & Temesgen Zewotir & Shaun Ramroop, 2017. "Structured Additive Quantile Regression for Assessing the Determinants of Childhood Anemia in Rwanda," IJERPH, MDPI, vol. 14(6), pages 1-15, June.
    18. Medina-Olivares, Victor & Calabrese, Raffaella & Dong, Yizhe & Shi, Baofeng, 2022. "Spatial dependence in microfinance credit default," International Journal of Forecasting, Elsevier, vol. 38(3), pages 1071-1085.
    19. Maria Rosaria Ferrante & Silvia Pacei, 2017. "Small domain estimation of business statistics by using multivariate skew normal models," Journal of the Royal Statistical Society Series A, Royal Statistical Society, vol. 180(4), pages 1057-1088, October.
    20. Rodrigues, Josemar & Bazán, Jorge L. & Suzuki, Adriano K. & Balakrishnan, Narayanaswamy, 2016. "The Bayesian restricted Conway–Maxwell-Binomial model to control dispersion in count data," Statistics & Probability Letters, Elsevier, vol. 119(C), pages 281-288.

    More about this item

    Keywords

    Generalized Linear Mixed Effects Models; Normal-Independent class; Normal density; Student-t; Slash density; Bayesian Method.;
    All these keywords.

    JEL classification:

    • C11 - Mathematical and Quantitative Methods - - Econometric and Statistical Methods and Methodology: General - - - Bayesian Analysis: General
    • C53 - Mathematical and Quantitative Methods - - Econometric Modeling - - - Forecasting and Prediction Models; Simulation Methods
    • C63 - Mathematical and Quantitative Methods - - Mathematical Methods; Programming Models; Mathematical and Simulation Modeling - - - Computational Techniques

    NEP fields

    This paper has been announced in the following NEP Reports:

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:pra:mprapa:99165. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Joachim Winter (email available below). General contact details of provider: https://edirc.repec.org/data/vfmunde.html .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.