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Inference and computation with generalized additive models and their extensions

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  • Simon N. Wood

    (University of Bristol)

Abstract

Regression models in which a response variable is related to smooth functions of some predictor variables are popular as a result of their appealing balance between flexibility and interpretability. Since the original generalized additive models of Hastie and Tibshirani (Generalized additive models. Chapman & Hall, Boca Raton, 1990) numerous model extensions have been proposed, and a variety of practically useful computational strategies have emerged. This paper provides an overview of some widely applicable frameworks for this type of modelling, emphasizing the similarities between the different approaches, and the equivalence of smoothing, Gaussian latent process models and Gaussian random effects. The focus is particularly on Bayes empirical smoother theory, fully Bayesian inference via stochastic simulation or integrated nested Laplace approximation and boosting.

Suggested Citation

  • Simon N. Wood, 2020. "Inference and computation with generalized additive models and their extensions," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 29(2), pages 307-339, June.
    • Handle: RePEc:spr:testjl:v:29:y:2020:i:2:d:10.1007_s11749-020-00711-5
    DOI: 10.1007/s11749-020-00711-5
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    References listed on IDEAS

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    1. Wood, Simon N., 2016. "Just Another Gibbs Additive Modeler: Interfacing JAGS and mgcv," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 75(i07).
    2. Simon N. Wood, 2003. "Thin plate regression splines," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 65(1), pages 95-114, February.
    3. Simon N. Wood, 2011. "Fast stable restricted maximum likelihood and marginal likelihood estimation of semiparametric generalized linear models," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 73(1), pages 3-36, January.
    4. Augustin, Nicole H. & Sauleau, Erik-André & Wood, Simon N., 2012. "On quantile quantile plots for generalized linear models," Computational Statistics & Data Analysis, Elsevier, vol. 56(8), pages 2404-2409.
    5. Schmid, Matthias & Hothorn, Torsten, 2008. "Boosting additive models using component-wise P-Splines," Computational Statistics & Data Analysis, Elsevier, vol. 53(2), pages 298-311, December.
    6. S. N. Wood, 2000. "Modelling and smoothing parameter estimation with multiple quadratic penalties," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 62(2), pages 413-428.
    7. Håvard Rue & Sara Martino & Nicolas Chopin, 2009. "Approximate Bayesian inference for latent Gaussian models by using integrated nested Laplace approximations," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 71(2), pages 319-392, April.
    8. E. D. Clarke & D. C. Speirs & M. R. Heath & S. N. Wood & W. S. C. Gurney & S. J. Holmes, 2006. "Calibrating remotely sensed chlorophyll‐a data by using penalized regression splines," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 55(3), pages 331-353, May.
    9. Simon N. Wood & Matteo Fasiolo, 2017. "A generalized Fellner‐Schall method for smoothing parameter optimization with application to Tweedie location, scale and shape models," Biometrics, The International Biometric Society, vol. 73(4), pages 1071-1081, December.
    10. Simon N. Wood & Zheyuan Li & Gavin Shaddick & Nicole H. Augustin, 2017. "Generalized Additive Models for Gigadata: Modeling the U.K. Black Smoke Network Daily Data," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 112(519), pages 1199-1210, July.
    11. Umlauf, Nikolaus & Adler, Daniel & Kneib, Thomas & Lang, Stefan & Zeileis, Achim, 2015. "Structured Additive Regression Models: An R Interface to BayesX," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 63(i21).
    12. Finn Lindgren & Håvard Rue & Johan Lindström, 2011. "An explicit link between Gaussian fields and Gaussian Markov random fields: the stochastic partial differential equation approach," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 73(4), pages 423-498, September.
    13. Ruppert,David & Wand,M. P. & Carroll,R. J., 2003. "Semiparametric Regression," Cambridge Books, Cambridge University Press, number 9780521785167, October.
    14. Kristensen, Kasper & Nielsen, Anders & Berg, Casper W. & Skaug, Hans & Bell, Bradley M., 2016. "TMB: Automatic Differentiation and Laplace Approximation," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 70(i05).
    15. Andreas Mayr & Nora Fenske & Benjamin Hofner & Thomas Kneib & Matthias Schmid, 2012. "Generalized additive models for location, scale and shape for high dimensional data—a flexible approach based on boosting," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 61(3), pages 403-427, May.
    16. Ludwig Fahrmeir & Stefan Lang, 2001. "Bayesian inference for generalized additive mixed models based on Markov random field priors," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 50(2), pages 201-220.
    17. Martins, Thiago G. & Simpson, Daniel & Lindgren, Finn & Rue, Håvard, 2013. "Bayesian computing with INLA: New features," Computational Statistics & Data Analysis, Elsevier, vol. 67(C), pages 68-83.
    18. Gerhard Tutz & Harald Binder, 2006. "Generalized Additive Modeling with Implicit Variable Selection by Likelihood-Based Boosting," Biometrics, The International Biometric Society, vol. 62(4), pages 961-971, December.
    19. Gerda Claeskens & Tatyana Krivobokova & Jean D. Opsomer, 2009. "Asymptotic properties of penalized spline estimators," Biometrika, Biometrika Trust, vol. 96(3), pages 529-544.
    20. Simon N. Wood, 2008. "Fast stable direct fitting and smoothness selection for generalized additive models," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 70(3), pages 495-518, July.
    21. P. G. Bissiri & C. C. Holmes & S. G. Walker, 2016. "A general framework for updating belief distributions," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 78(5), pages 1103-1130, November.
    22. Sonja Greven & Thomas Kneib, 2010. "On the behaviour of marginal and conditional AIC in linear mixed models," Biometrika, Biometrika Trust, vol. 97(4), pages 773-789.
    23. E. D. Clarke & D. C. Speirs & M. R. Heath & S. N. Wood & W. S. C. Gurney & S. J. Holmes, 2006. "Corrigendum: Calibrating remotely sensed chlorophyll‐a data by using penalized regression splines," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 55(4), pages 551-552, August.
    24. R. A. Rigby & D. M. Stasinopoulos, 2005. "Generalized additive models for location, scale and shape," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 54(3), pages 507-554, June.
    25. Stasinopoulos, D. Mikis & Rigby, Robert A., 2007. "Generalized Additive Models for Location Scale and Shape (GAMLSS) in R," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 23(i07).
    26. Ruppert,David & Wand,M. P. & Carroll,R. J., 2003. "Semiparametric Regression," Cambridge Books, Cambridge University Press, number 9780521780506, October.
    27. Simon N. Wood & Natalya Pya & Benjamin Säfken, 2016. "Smoothing Parameter and Model Selection for General Smooth Models," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 111(516), pages 1548-1563, October.
    28. Inyoung Kim & Noah D. Cohen & Raymond J. Carroll, 2003. "Semiparametric Regression Splines in Matched Case-Control Studies," Biometrics, The International Biometric Society, vol. 59(4), pages 1158-1169, December.
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