IDEAS home Printed from https://ideas.repec.org/a/eee/ecomod/v443y2021ics0304380021000272.html
   My bibliography  Save this article

A model of seasonal variation in somatic growth rates applied to two temperate turtle species

Author

Listed:
  • Keevil, Matthew G.
  • Armstrong, Doug P.
  • Brooks, Ronald J.
  • Litzgus, Jacqueline D.

Abstract

Modeling somatic growth of animals whose growth rates are seasonally variable is a challenge. Seasonal variation in growth reduces model fit and precision if not accounted for, and ad hoc adjustments to growth models may be biased or biologically unrealistic. We developed a growth phenology model (GPM) that uses a logistic function to model the cumulative proportion of total annual growth. We applied this model using two different approaches to datasets from temperate-climate populations of two freshwater turtle species that experience extended winter dormancy during which no growth occurs. The first dataset consisted of repeated intra-annual observations of sub-adult snapping turtles (Chelydra serpentina) tracked by radio telemetry, which we analyzed in a Bayesian context, focusing on growth over a single season. We then demonstrated a post hoc combination of the fitted GPM with a separate overall growth model. For the second application, we fully integrated the GPM into a hierarchical von Bertalanffy growth model, which we applied to a dataset of primarily inter-annual observations of juvenile midland painted turtles (Chrysemys picta marginata). Specifying informative priors allowed us to fit the model despite the sparseness of intra-annual information in the data. We also demonstrate using the beta cumulative distribution function as an alternative to the logistic function in the GPM. We discuss incorporating prior knowledge about seasonal foraging and activity periods into growth models via a GPM as a transparent alternative to deterministic, implicit, a priori constructs.

Suggested Citation

  • Keevil, Matthew G. & Armstrong, Doug P. & Brooks, Ronald J. & Litzgus, Jacqueline D., 2021. "A model of seasonal variation in somatic growth rates applied to two temperate turtle species," Ecological Modelling, Elsevier, vol. 443(C).
  • Handle: RePEc:eee:ecomod:v:443:y:2021:i:c:s0304380021000272
    DOI: 10.1016/j.ecolmodel.2021.109454
    as

    Download full text from publisher

    File URL: http://www.sciencedirect.com/science/article/pii/S0304380021000272
    Download Restriction: Full text for ScienceDirect subscribers only

    File URL: https://libkey.io/10.1016/j.ecolmodel.2021.109454?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Somers, I.F., 1988. "On a seasonally oscillating growth function," Fishbyte, The WorldFish Center, vol. 6(1), pages 8-11.
    2. Kielbassa, J. & Delignette-Muller, M.L. & Pont, D. & Charles, S., 2010. "Application of a temperature-dependent von Bertalanffy growth model to bullhead (Cottus gobio)," Ecological Modelling, Elsevier, vol. 221(20), pages 2475-2481.
    3. Armstrong, Doug P. & Brooks, Ronald J., 2013. "Application of hierarchical biphasic growth models to long-term data for snapping turtles," Ecological Modelling, Elsevier, vol. 250(C), pages 119-125.
    4. David J. Spiegelhalter & Nicola G. Best & Bradley P. Carlin & Angelika Van Der Linde, 2002. "Bayesian measures of model complexity and fit," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 64(4), pages 583-639, October.
    5. D. G. Malcolm & J. H. Roseboom & C. E. Clark & W. Fazar, 1959. "Application of a Technique for Research and Development Program Evaluation," Operations Research, INFORMS, vol. 7(5), pages 646-669, October.
    6. Elizabeth S. Garrett & Scott L. Zeger, 2000. "Latent Class Model Diagnosis," Biometrics, The International Biometric Society, vol. 56(4), pages 1055-1067, December.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Chevallier, Damien & Mourrain, Baptiste & Girondot, Marc, 2020. "Modelling leatherback biphasic indeterminate growth using a modified Gompertz equation," Ecological Modelling, Elsevier, vol. 426(C).
    2. Bei Jiang & Michael R. Elliott & Mary D. Sammel & Naisyin Wang, 2015. "Joint modeling of cross-sectional health outcomes and longitudinal predictors via mixtures of means and variances," Biometrics, The International Biometric Society, vol. 71(2), pages 487-497, June.
    3. Brian Neelon & A. James O'Malley & Sharon-Lise T. Normand, 2011. "A Bayesian Two-Part Latent Class Model for Longitudinal Medical Expenditure Data: Assessing the Impact of Mental Health and Substance Abuse Parity," Biometrics, The International Biometric Society, vol. 67(1), pages 280-289, March.
    4. Jing Huang & Ying Yuan & David Wetter, 2019. "Latent Class Dynamic Mediation Model with Application to Smoking Cessation Data," Psychometrika, Springer;The Psychometric Society, vol. 84(1), pages 1-18, March.
    5. Lee, Jung Wun & Chung, Hwan & Jeon, Saebom, 2021. "Bayesian multivariate latent class profile analysis: Exploring the developmental progression of youth depression and substance use," Computational Statistics & Data Analysis, Elsevier, vol. 161(C).
    6. Benjamin E. Leiby & Mary D. Sammel & Thomas R. Ten Have & Kevin G. Lynch, 2009. "Identification of multivariate responders and non‐responders by using Bayesian growth curve latent class models," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 58(4), pages 505-524, September.
    7. Yinghan Chen & Steven Andrew Culpepper & Yuguo Chen, 2023. "Bayesian Inference for an Unknown Number of Attributes in Restricted Latent Class Models," Psychometrika, Springer;The Psychometric Society, vol. 88(2), pages 613-635, June.
    8. Buddhavarapu, Prasad & Bansal, Prateek & Prozzi, Jorge A., 2021. "A new spatial count data model with time-varying parameters," Transportation Research Part B: Methodological, Elsevier, vol. 150(C), pages 566-586.
    9. Mumtaz, Haroon & Theodoridis, Konstantinos, 2017. "Common and country specific economic uncertainty," Journal of International Economics, Elsevier, vol. 105(C), pages 205-216.
    10. Jesse Elliott & Zemin Bai & Shu-Ching Hsieh & Shannon E Kelly & Li Chen & Becky Skidmore & Said Yousef & Carine Zheng & David J Stewart & George A Wells, 2020. "ALK inhibitors for non-small cell lung cancer: A systematic review and network meta-analysis," PLOS ONE, Public Library of Science, vol. 15(2), pages 1-18, February.
    11. Christina Leuker & Thorsten Pachur & Ralph Hertwig & Timothy J. Pleskac, 2019. "Do people exploit risk–reward structures to simplify information processing in risky choice?," Journal of the Economic Science Association, Springer;Economic Science Association, vol. 5(1), pages 76-94, August.
    12. Francois Olivier & Laval Guillaume, 2011. "Deviance Information Criteria for Model Selection in Approximate Bayesian Computation," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 10(1), pages 1-25, July.
    13. Raggi, Davide & Bordignon, Silvano, 2012. "Long memory and nonlinearities in realized volatility: A Markov switching approach," Computational Statistics & Data Analysis, Elsevier, vol. 56(11), pages 3730-3742.
    14. Angelica Gianfreda & Francesco Ravazzolo & Luca Rossini, 2023. "Large Time‐Varying Volatility Models for Hourly Electricity Prices," Oxford Bulletin of Economics and Statistics, Department of Economics, University of Oxford, vol. 85(3), pages 545-573, June.
    15. Rubio, F.J. & Steel, M.F.J., 2011. "Inference for grouped data with a truncated skew-Laplace distribution," Computational Statistics & Data Analysis, Elsevier, vol. 55(12), pages 3218-3231, December.
    16. Alessandri, Piergiorgio & Mumtaz, Haroon, 2019. "Financial regimes and uncertainty shocks," Journal of Monetary Economics, Elsevier, vol. 101(C), pages 31-46.
    17. Padilla, Juan L. & Azevedo, Caio L.N. & Lachos, Victor H., 2018. "Multidimensional multiple group IRT models with skew normal latent trait distributions," Journal of Multivariate Analysis, Elsevier, vol. 167(C), pages 250-268.
    18. Svetlana V. Tishkovskaya & Paul G. Blackwell, 2021. "Bayesian estimation of heterogeneous environments from animal movement data," Environmetrics, John Wiley & Sons, Ltd., vol. 32(6), September.
    19. David Macro & Jeroen Weesie, 2016. "Inequalities between Others Do Matter: Evidence from Multiplayer Dictator Games," Games, MDPI, vol. 7(2), pages 1-23, April.
    20. Tautenhahn, Susanne & Heilmeier, Hermann & Jung, Martin & Kahl, Anja & Kattge, Jens & Moffat, Antje & Wirth, Christian, 2012. "Beyond distance-invariant survival in inverse recruitment modeling: A case study in Siberian Pinus sylvestris forests," Ecological Modelling, Elsevier, vol. 233(C), pages 90-103.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:eee:ecomod:v:443:y:2021:i:c:s0304380021000272. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Catherine Liu (email available below). General contact details of provider: http://www.journals.elsevier.com/ecological-modelling .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.