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Adaptive Gaussian Markov random fields with applications in human brain mapping

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  • A. Brezger
  • L. Fahrmeir
  • A. Hennerfeind

Abstract

Summary. Functional magnetic resonance imaging has become a standard technology in human brain mapping. Analyses of the massive spatiotemporal functional magnetic resonance imaging data sets often focus on parametric or non‐parametric modelling of the temporal component, whereas spatial smoothing is based on Gaussian kernels or random fields. A weakness of Gaussian spatial smoothing is underestimation of activation peaks or blurring of high curvature transitions between activated and non‐activated regions of the brain. To improve spatial adaptivity, we introduce a class of inhomogeneous Markov random fields with stochastic interaction weights in a space‐varying coefficient model. For given weights, the random field is conditionally Gaussian, but marginally it is non‐Gaussian. Fully Bayesian inference, including estimation of weights and variance parameters, can be carried out through efficient Markov chain Monte Carlo simulation. Although motivated by the analysis of functional magnetic resonance imaging data, the methodological development is general and can also be used for spatial smoothing and regression analysis of areal data on irregular lattices. An application to stylized artificial data and to real functional magnetic resonance imaging data from a visual stimulation experiment demonstrates the performance of our approach in comparison with Gaussian and robustified non‐Gaussian Markov random‐field models.

Suggested Citation

  • A. Brezger & L. Fahrmeir & A. Hennerfeind, 2007. "Adaptive Gaussian Markov random fields with applications in human brain mapping," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 56(3), pages 327-345, May.
  • Handle: RePEc:bla:jorssc:v:56:y:2007:i:3:p:327-345
    DOI: 10.1111/j.1467-9876.2007.00580.x
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    References listed on IDEAS

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    1. Brezger, Andreas & Kneib, Thomas & Lang, Stefan, 2005. "BayesX: Analyzing Bayesian Structural Additive Regression Models," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 14(i11).
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    Cited by:

    1. Yu Ryan Yue & Ji Meng Loh, 2011. "Bayesian Semiparametric Intensity Estimation for Inhomogeneous Spatial Point Processes," Biometrics, The International Biometric Society, vol. 67(3), pages 937-946, September.
    2. Paul Schmidt & Volker J Schmid & Christian Gaser & Dorothea Buck & Susanne Bührlen & Annette Förschler & Mark Mühlau, 2013. "Fully Bayesian Inference for Structural MRI: Application to Segmentation and Statistical Analysis of T2-Hypointensities," PLOS ONE, Public Library of Science, vol. 8(7), pages 1-14, July.
    3. Ying C. MacNab, 2018. "Some recent work on multivariate Gaussian Markov random fields," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 27(3), pages 497-541, September.
    4. Håvard Rue & Sara Martino & Nicolas Chopin, 2009. "Approximate Bayesian inference for latent Gaussian models by using integrated nested Laplace approximations," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 71(2), pages 319-392, April.
    5. Harm Jan Boonstra & Jan van den Brakel & Sumonkanti Das, 2021. "Multilevel time series modelling of mobility trends in the Netherlands for small domains," Journal of the Royal Statistical Society Series A, Royal Statistical Society, vol. 184(3), pages 985-1007, July.
    6. Alastair Rushworth & Duncan Lee & Christophe Sarran, 2017. "An adaptive spatiotemporal smoothing model for estimating trends and step changes in disease risk," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 66(1), pages 141-157, January.
    7. Yu Yue & Paul Speckman & Dongchu Sun, 2012. "Priors for Bayesian adaptive spline smoothing," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 64(3), pages 577-613, June.
    8. Stefanie Kalus & Philipp Sämann & Ludwig Fahrmeir, 2014. "Classification of brain activation via spatial Bayesian variable selection in fMRI regression," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 8(1), pages 63-83, March.
    9. Rodrigues, Alexandre & Assunção, Renato, 2008. "Propriety of posterior in Bayesian space varying parameter models with normal data," Statistics & Probability Letters, Elsevier, vol. 78(15), pages 2408-2411, October.

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