IDEAS home Printed from https://ideas.repec.org/a/spr/stmapp/v27y2018i2d10.1007_s10260-017-0405-z.html
   My bibliography  Save this article

Nonparametric Bayesian inference in applications

Author

Listed:
  • Peter Müeller

    (University of Texas at Austin)

  • Fernando A. Quintana

    (Pontificia Universidad Católica de Chile)

  • Garritt Page

    (Brigham Young University)

Abstract

Nonparametric Bayesian (BNP) inference is concerned with inference for infinite dimensional parameters, including unknown distributions, families of distributions, random mean functions and more. Better computational resources and increased use of massive automated or semi-automated data collection makes BNP models more and more common. We briefly review some of the main classes of models, with an emphasis on how they arise from applied research questions, and focus in more depth only on BNP models for spatial inference as a good example of a class of inference problems where BNP models can successfully address limitations of parametric inference.

Suggested Citation

  • Peter Müeller & Fernando A. Quintana & Garritt Page, 2018. "Nonparametric Bayesian inference in applications," Statistical Methods & Applications, Springer;Società Italiana di Statistica, vol. 27(2), pages 175-206, June.
    • Handle: RePEc:spr:stmapp:v:27:y:2018:i:2:d:10.1007_s10260-017-0405-z
    DOI: 10.1007/s10260-017-0405-z
    as

    Download full text from publisher

    File URL: http://link.springer.com/10.1007/s10260-017-0405-z
    File Function: Abstract
    Download Restriction: Access to the full text of the articles in this series is restricted.
    File URL: https://libkey.io/10.1007/s10260-017-0405-z?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Merlise Clyde & Edward I. George, 2000. "Flexible empirical Bayes estimation for wavelets," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 62(4), pages 681-698.
    2. Lancelot F. James & Antonio Lijoi & Igor Prünster, 2009. "Posterior Analysis for Normalized Random Measures with Independent Increments," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 36(1), pages 76-97, March.
    3. Argiento, Raffaele & Guglielmi, Alessandra & Pievatolo, Antonio, 2010. "Bayesian density estimation and model selection using nonparametric hierarchical mixtures," Computational Statistics & Data Analysis, Elsevier, vol. 54(4), pages 816-832, April.
    4. Teh, Yee Whye & Jordan, Michael I. & Beal, Matthew J. & Blei, David M., 2006. "Hierarchical Dirichlet Processes," Journal of the American Statistical Association, American Statistical Association, vol. 101, pages 1566-1581, December.
    5. Gelfand, Alan E. & Kottas, Athanasios & MacEachern, Steven N., 2005. "Bayesian Nonparametric Spatial Modeling With Dirichlet Process Mixing," Journal of the American Statistical Association, American Statistical Association, vol. 100, pages 1021-1035, September.
    6. Yanxun Xu & Peter Müller & Abdus S. Wahed & Peter F. Thall, 2016. "Bayesian Nonparametric Estimation for Dynamic Treatment Regimes With Sequential Transition Times," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 111(515), pages 921-950, July.
    7. Antonio Lijoi & Ramsés H. Mena & Igor Prünster, 2007. "Controlling the reinforcement in Bayesian non‐parametric mixture models," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 69(4), pages 715-740, September.
    8. Juhee Lee & Peter Müller & Yitan Zhu & Yuan Ji, 2013. "A Nonparametric Bayesian Model for Local Clustering With Application to Proteomics," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 108(503), pages 775-788, September.
    9. Sonia Petrone & Michele Guindani & Alan E. Gelfand, 2009. "Hybrid Dirichlet mixture models for functional data," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 71(4), pages 755-782, September.
    10. Jason A. Duan & Michele Guindani & Alan E. Gelfand, 2007. "Generalized Spatial Dirichlet Process Models," Biometrika, Biometrika Trust, vol. 94(4), pages 809-825.
    11. Kottas A. & Gelfand A.E., 2001. "Bayesian Semiparametric Median Regression Modeling," Journal of the American Statistical Association, American Statistical Association, vol. 96, pages 1458-1468, December.
    12. Brezger, Andreas & Kneib, Thomas & Lang, Stefan, 2005. "BayesX: Analyzing Bayesian Structural Additive Regression Models," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 14(i11).
    13. Brian J. Reich & Dipankar Bandyopadhyay & Howard D. Bondell, 2013. "A Nonparametric Spatial Model for Periodontal Data With Nonrandom Missingness," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 108(503), pages 820-831, September.
    14. Angela Schörgendorfer & Adam J. Branscum & Timothy E. Hanson, 2013. "A Bayesian Goodness of Fit Test and Semiparametric Generalization of Logistic Regression with Measurement Data," Biometrics, The International Biometric Society, vol. 69(2), pages 508-519, June.
    15. Jara, Alejandro & Hanson, Timothy & Quintana, Fernando A. & Müller, Peter & Rosner, Gary L., 2011. "DPpackage: Bayesian Semi- and Nonparametric Modeling in R," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 40(i05).
    16. Rodríguez, Abel & Dunson, David B & Gelfand, Alan E, 2008. "The Nested Dirichlet Process," Journal of the American Statistical Association, American Statistical Association, vol. 103(483), pages 1131-1154.
    17. Fernando A. Quintana & Pilar L. Iglesias, 2003. "Bayesian clustering and product partition models," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 65(2), pages 557-574, May.
    18. Gramacy, Robert B & Lee, Herbert K. H, 2008. "Bayesian Treed Gaussian Process Models With an Application to Computer Modeling," Journal of the American Statistical Association, American Statistical Association, vol. 103(483), pages 1119-1130.
    19. Stephen Walker & Bani K. Mallick, 1999. "A Bayesian Semiparametric Accelerated Failure Time Model," Biometrics, The International Biometric Society, vol. 55(2), pages 477-483, June.
    20. Berger J. O & Guglielmi A., 2001. "Bayesian and Conditional Frequentist Testing of a Parametric Model Versus Nonparametric Alternatives," Journal of the American Statistical Association, American Statistical Association, vol. 96, pages 174-184, March.
    21. Ghosal,Subhashis & van der Vaart,Aad, 2017. "Fundamentals of Nonparametric Bayesian Inference," Cambridge Books, Cambridge University Press, number 9780521878265.
    22. Georgios Papageorgiou & Sylvia Richardson & Nicky Best, 2015. "Bayesian non-parametric models for spatially indexed data of mixed type," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 77(5), pages 973-999, November.
    23. Dalal, S. R., 1979. "Dirichlet invariant processes and applications to nonparametric estimation of symmetric distribution functions," Stochastic Processes and their Applications, Elsevier, vol. 9(1), pages 99-107, August.
    24. Luis E. Nieto‐Barajas & Stephen G. Walker, 2002. "Markov Beta and Gamma Processes for Modelling Hazard Rates," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 29(3), pages 413-424, September.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Bissiri, Pier Giovanni & Cleanthous, Galatia & Emery, Xavier & Nipoti, Bernardo & Porcu, Emilio, 2022. "Nonparametric Bayesian modelling of longitudinally integrated covariance functions on spheres," Computational Statistics & Data Analysis, Elsevier, vol. 176(C).
    2. Banerjee, Sayantan & Akbani, Rehan & Baladandayuthapani, Veerabhadran, 2019. "Spectral clustering via sparse graph structure learning with application to proteomic signaling networks in cancer," Computational Statistics & Data Analysis, Elsevier, vol. 132(C), pages 46-69.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Zahra Barzegar & Firoozeh Rivaz, 2020. "A scalable Bayesian nonparametric model for large spatio-temporal data," Computational Statistics, Springer, vol. 35(1), pages 153-173, March.
    2. Stefano Favaro & Antonio Lijoi & Igor Prünster, 2012. "On the stick–breaking representation of normalized inverse Gaussian priors," DEM Working Papers Series 008, University of Pavia, Department of Economics and Management.
    3. Bruno Scarpa & David B. Dunson, 2014. "Enriched Stick-Breaking Processes for Functional Data," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 109(506), pages 647-660, June.
    4. Martínez-Ovando Juan Carlos & Walker Stephen G., 2011. "Time-series Modelling, Stationarity and Bayesian Nonparametric Methods," Working Papers 2011-08, Banco de México.
    5. Bassetti, Federico & Casarin, Roberto & Leisen, Fabrizio, 2014. "Beta-product dependent Pitman–Yor processes for Bayesian inference," Journal of Econometrics, Elsevier, vol. 180(1), pages 49-72.
    6. Bhattacharya, Indrabati & Ghosal, Subhashis, 2021. "Bayesian multivariate quantile regression using Dependent Dirichlet Process prior," Journal of Multivariate Analysis, Elsevier, vol. 185(C).
    7. Athanasios Kottas & Milovan Krnjajić, 2009. "Bayesian Semiparametric Modelling in Quantile Regression," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 36(2), pages 297-319, June.
    8. Christoph Hellmayr & Alan E. Gelfand, 2021. "A Partition Dirichlet Process Model for Functional Data Analysis," Sankhya B: The Indian Journal of Statistics, Springer;Indian Statistical Institute, vol. 83(1), pages 30-65, May.
    9. Ma, Zichen & Hanson, Timothy E., 2020. "Bayesian nonparametric test for independence between random vectors," Computational Statistics & Data Analysis, Elsevier, vol. 149(C).
    10. J. E. Griffin & M. Kolossiatis & M. F. J. Steel, 2013. "Comparing distributions by using dependent normalized random-measure mixtures," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 75(3), pages 499-529, June.
    11. Subharup Guha & Rex Jung & David Dunson, 2022. "Predicting phenotypes from brain connection structure," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 71(3), pages 639-668, June.
    12. Bassetti, Federico & Casarin, Roberto & Leisen, Fabrizio, 2011. "Beta-product Poisson-Dirichlet Processes," DES - Working Papers. Statistics and Econometrics. WS 12160, Universidad Carlos III de Madrid. Departamento de Estadística.
    13. Fabrizio Leisen & Antonio Lijoi, 2010. "Vectors of two-parameter Poisson-Dirichlet processes," Quaderni di Dipartimento 119, University of Pavia, Department of Economics and Quantitative Methods.
    14. Pierpaolo De Blasi & Stefano Favaro & Antonio Lijoi & Ramsés H. Mena & Igor Prünster & Mattteo Ruggiero, 2013. "Are Gibbs-type priors the most natural generalization of the Dirichlet process?," DEM Working Papers Series 054, University of Pavia, Department of Economics and Management.
    15. Antonio Lijoi & Igor Prünster & Giovanni Rebaudo, 2023. "Flexible clustering via hidden hierarchical Dirichlet priors," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 50(1), pages 213-234, March.
    16. Jim E. Griffin & Fabrizio Leisen, 2017. "Compound random measures and their use in Bayesian non-parametrics," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 79(2), pages 525-545, March.
    17. Jin, Xin & Maheu, John M., 2016. "Bayesian semiparametric modeling of realized covariance matrices," Journal of Econometrics, Elsevier, vol. 192(1), pages 19-39.
    18. Wang, Ketong & Porter, Michael D., 2018. "Optimal Bayesian clustering using non-negative matrix factorization," Computational Statistics & Data Analysis, Elsevier, vol. 128(C), pages 395-411.
    19. Ji, Yonggang & Lin, Nan & Zhang, Baoxue, 2012. "Model selection in binary and tobit quantile regression using the Gibbs sampler," Computational Statistics & Data Analysis, Elsevier, vol. 56(4), pages 827-839.
    20. Cornwall, Gary J. & Parent, Olivier, 2017. "Embracing heterogeneity: the spatial autoregressive mixture model," Regional Science and Urban Economics, Elsevier, vol. 64(C), pages 148-161.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:spr:stmapp:v:27:y:2018:i:2:d:10.1007_s10260-017-0405-z. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.springer.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.