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Rhizosphere bacteriome structure and functions

Author

Listed:
  • Ning Ling

    (Lanzhou University
    Nanjing Agricultural University)

  • Tingting Wang

    (Nanjing Agricultural University)

  • Yakov Kuzyakov

    (University of Goettingen
    Peoples Friendship University of Russia (RUDN University))

Abstract

Microbial composition and functions in the rhizosphere—an important microbial hotspot—are among the most fascinating yet elusive topics in microbial ecology. We used 557 pairs of published 16S rDNA amplicon sequences from the bulk soils and rhizosphere in different ecosystems around the world to generalize bacterial characteristics with respect to community diversity, composition, and functions. The rhizosphere selects microorganisms from bulk soil to function as a seed bank, reducing microbial diversity. The rhizosphere is enriched in Bacteroidetes, Proteobacteria, and other copiotrophs. Highly modular but unstable bacterial networks in the rhizosphere (common for r-strategists) reflect the interactions and adaptations of microorganisms to dynamic conditions. Dormancy strategies in the rhizosphere are dominated by toxin–antitoxin systems, while sporulation is common in bulk soils. Functional predictions showed that genes involved in organic compound conversion, nitrogen fixation, and denitrification were strongly enriched in the rhizosphere (11–182%), while genes involved in nitrification were strongly depleted.

Suggested Citation

  • Ning Ling & Tingting Wang & Yakov Kuzyakov, 2022. "Rhizosphere bacteriome structure and functions," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
    • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-28448-9
    DOI: 10.1038/s41467-022-28448-9
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    2. Evangelia Tsoumalakou & Eleni Mente & Konstantinos A. Kormas & Nikolaos Katsoulas & Nikolaos Vlahos & Panagiotis Kapsis & Efi Levizou, 2022. "Precise Monitoring of Lettuce Functional Responses to Minimal Nutrient Supplementation Identifies Aquaponic System’s Nutrient Limitations and Their Time-Course," Agriculture, MDPI, vol. 12(8), pages 1-21, August.
    3. Rita Biasi & Elena Brunori & Silvia Vanino & Alessandra Bernardini & Alessia Catalani & Roberta Farina & Antonio Bruno & Gabriele Chilosi, 2023. "Soil–Plant Interaction Mediated by Indigenous AMF in Grafted and Own-Rooted Grapevines under Field Conditions," Agriculture, MDPI, vol. 13(5), pages 1-13, May.
    4. Lige Ma & Yu Luo & Chen Chen & Huan Luo & Shuqi Wang & Yue Yuan & Wenhua Yang & Can Liu & Xulv Cao & Nannan Li, 2023. "Bacterial Strategies for Improving the Yield, Quality, and Adaptability of Oil Crops," Agriculture, MDPI, vol. 14(1), pages 1-29, December.

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