IDEAS home Printed from https://ideas.repec.org/a/eee/ecomod/v225y2012icp115-126.html
   My bibliography  Save this article

1-D test-bed calibration of a 3-D Lake Superior biogeochemical model

Author

Listed:
  • McDonald, C.P.
  • Bennington, V.
  • Urban, N.R.
  • McKinley, G.A.

Abstract

Complex circulation models are commonly coupled with ecosystem models to characterize large-scale biogeochemical processes. While the reliability of these models is highly dependent upon accurate parameterization, the large computational expense associated with general circulation models generally prohibits the application of formal parameter estimation techniques to ecological model components in situ. Here, a 1-D model, driven by 3-D model output, is developed to provide an efficient test-bed environment in which model parameters are estimated using a Markov Chain Monte Carlo (MCMC) approach. The spatial and temporal uncertainty of model predictions due to parameter estimation error is quantified. A simple ecosystem model is calibrated for Lake Superior that is capable of reproducing most of the major features in observed concentration profiles of nutrients, dissolved organic carbon, and chlorophyll at the calibration location in the western basin of the lake. However, the optimized model is unable to reconcile observations of these variables with measured primary productivity during the stratified period. The test-bed calibrated parameters perform well in the 3-D framework at off-shore locations throughout the lake, and result in a 43% improvement in fit to validation data over manually adjusted parameters. The test-bed approach presented here represents a practical approach to the calibration of 3-D coupled models and has the potential to significantly improve model performance.

Suggested Citation

  • McDonald, C.P. & Bennington, V. & Urban, N.R. & McKinley, G.A., 2012. "1-D test-bed calibration of a 3-D Lake Superior biogeochemical model," Ecological Modelling, Elsevier, vol. 225(C), pages 115-126.
  • Handle: RePEc:eee:ecomod:v:225:y:2012:i:c:p:115-126
    DOI: 10.1016/j.ecolmodel.2011.11.021
    as

    Download full text from publisher

    File URL: http://www.sciencedirect.com/science/article/pii/S0304380011005631
    Download Restriction: Full text for ScienceDirect subscribers only

    File URL: https://libkey.io/10.1016/j.ecolmodel.2011.11.021?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Law, Tony & Zhang, Weitao & Zhao, Jingyang & Arhonditsis, George B., 2009. "Structural changes in lake functioning induced from nutrient loading and climate variability," Ecological Modelling, Elsevier, vol. 220(7), pages 979-997.
    2. Smith, S.Lan & Yamanaka, Yasuhiro, 2007. "Quantitative comparison of photoacclimation models for marine phytoplankton," Ecological Modelling, Elsevier, vol. 201(3), pages 547-552.
    3. Fuentes, Montserrat, 2007. "Approximate Likelihood for Large Irregularly Spaced Spatial Data," Journal of the American Statistical Association, American Statistical Association, vol. 102, pages 321-331, March.
    4. Jan Karlsson & Pär Byström & Jenny Ask & Per Ask & Lennart Persson & Mats Jansson, 2009. "Light limitation of nutrient-poor lake ecosystems," Nature, Nature, vol. 460(7254), pages 506-509, July.
    5. Michael L. Stein, 2005. "Space-Time Covariance Functions," Journal of the American Statistical Association, American Statistical Association, vol. 100, pages 310-321, March.
    6. McDonald, Cory P. & Urban, Noel R., 2010. "Using a model selection criterion to identify appropriate complexity in aquatic biogeochemical models," Ecological Modelling, Elsevier, vol. 221(3), pages 428-432.
    7. Arhonditsis, George B. & Qian, Song S. & Stow, Craig A. & Lamon, E. Conrad & Reckhow, Kenneth H., 2007. "Eutrophication risk assessment using Bayesian calibration of process-based models: Application to a mesotrophic lake," Ecological Modelling, Elsevier, vol. 208(2), pages 215-229.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Mata Almonacid, Pablo & Medel, Carolina, 2022. "A structure-preserving model for the dynamics of estuarine ecosystems and its application in western Patagonia fjords," Ecological Modelling, Elsevier, vol. 466(C).
    2. Vassilis Z. Antonopoulos & Soultana K. Gianniou, 2023. "Energy Budget, Water Quality Parameters and Primary Production Modeling in Lake Volvi in Northern Greece," Sustainability, MDPI, vol. 15(3), pages 1-22, January.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Ramin, Maryam & Labencki, Tanya & Boyd, Duncan & Trolle, Dennis & Arhonditsis, George B., 2012. "A Bayesian synthesis of predictions from different models for setting water quality criteria," Ecological Modelling, Elsevier, vol. 242(C), pages 127-145.
    2. Ramin, Maryam & Perhar, Gurbir & Shimoda, Yuko & Arhonditsis, George B., 2012. "Examination of the effects of nutrient regeneration mechanisms on plankton dynamics using aquatic biogeochemical modeling," Ecological Modelling, Elsevier, vol. 240(C), pages 139-155.
    3. Sudipto Banerjee & Alan E. Gelfand & Andrew O. Finley & Huiyan Sang, 2008. "Gaussian predictive process models for large spatial data sets," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 70(4), pages 825-848, September.
    4. Li, Yuzhao & Liu, Yong & Zhao, Lei & Hastings, Alan & Guo, Huaicheng, 2015. "Exploring change of internal nutrients cycling in a shallow lake: A dynamic nutrient driven phytoplankton model," Ecological Modelling, Elsevier, vol. 313(C), pages 137-148.
    5. Moreno Bevilacqua & Alfredo Alegria & Daira Velandia & Emilio Porcu, 2016. "Composite Likelihood Inference for Multivariate Gaussian Random Fields," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 21(3), pages 448-469, September.
    6. Frank Davenport, 2017. "Estimating standard errors in spatial panel models with time varying spatial correlation," Papers in Regional Science, Wiley Blackwell, vol. 96, pages 155-177, March.
    7. Daniel Griffith, 2010. "Modeling spatio-temporal relationships: retrospect and prospect," Journal of Geographical Systems, Springer, vol. 12(2), pages 111-123, June.
    8. Shibin Zhang, 2022. "Automatic estimation of spatial spectra via smoothing splines," Computational Statistics, Springer, vol. 37(2), pages 565-590, April.
    9. Xu, Yanhong & Peng, Hong & Yang, Yinqun & Zhang, Wanshun & Wang, Shuangling, 2014. "A cumulative eutrophication risk evaluation method based on a bioaccumulation model," Ecological Modelling, Elsevier, vol. 289(C), pages 77-85.
    10. Gupta, Abhimanyu, 2018. "Autoregressive spatial spectral estimates," Journal of Econometrics, Elsevier, vol. 203(1), pages 80-95.
    11. Marcus L. Nascimento & Kelly C. M. Gonçalves & Mario Jorge Mendonça, 2023. "Spatio-Temporal Instrumental Variables Regression with Missing Data: A Bayesian Approach," Computational Economics, Springer;Society for Computational Economics, vol. 62(1), pages 29-47, June.
    12. Guillermo Ferreira & Jorge Mateu & Emilio Porcu, 2018. "Spatio-temporal analysis with short- and long-memory dependence: a state-space approach," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 27(1), pages 221-245, March.
    13. Islam, Md. Nazrul & Kitazawa, Daisuke & Kokuryo, Naoki & Tabeta, Shigeru & Honma, Takamitsu & Komatsu, Nobuyuki, 2012. "Numerical modeling on transition of dominant algae in Lake Kitaura, Japan," Ecological Modelling, Elsevier, vol. 242(C), pages 146-163.
    14. Matthew J. Heaton & Abhirup Datta & Andrew O. Finley & Reinhard Furrer & Joseph Guinness & Rajarshi Guhaniyogi & Florian Gerber & Robert B. Gramacy & Dorit Hammerling & Matthias Katzfuss & Finn Lindgr, 2019. "A Case Study Competition Among Methods for Analyzing Large Spatial Data," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 24(3), pages 398-425, September.
    15. Sameh Abdulah & Yuxiao Li & Jian Cao & Hatem Ltaief & David E. Keyes & Marc G. Genton & Ying Sun, 2023. "Large‐scale environmental data science with ExaGeoStatR," Environmetrics, John Wiley & Sons, Ltd., vol. 34(1), February.
    16. Zhang, Weitao & Arhonditsis, George B., 2009. "A Bayesian hierarchical framework for calibrating aquatic biogeochemical models," Ecological Modelling, Elsevier, vol. 220(18), pages 2142-2161.
    17. Christopher Wikle & Mevin Hooten, 2010. "A general science-based framework for dynamical spatio-temporal models," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 19(3), pages 417-451, November.
    18. Richardson, Robert & Kottas, Athanasios & Sansó, Bruno, 2017. "Flexible integro-difference equation modeling for spatio-temporal data," Computational Statistics & Data Analysis, Elsevier, vol. 109(C), pages 182-198.
    19. Delgado, Miguel A. & Robinson, Peter M., 2015. "Non-nested testing of spatial correlation," Journal of Econometrics, Elsevier, vol. 187(1), pages 385-401.
    20. Zhixu Wu & Yunlin Zhang & Yongqiang Zhou & Mingliang Liu & Kun Shi & Zuoming Yu, 2015. "Seasonal-Spatial Distribution and Long-Term Variation of Transparency in Xin’anjiang Reservoir: Implications for Reservoir Management," IJERPH, MDPI, vol. 12(8), pages 1-16, August.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:eee:ecomod:v:225:y:2012:i:c:p:115-126. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Catherine Liu (email available below). General contact details of provider: http://www.journals.elsevier.com/ecological-modelling .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.