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Bayesian non‐parametric hidden Markov models with applications in genomics

Author

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  • C. Yau
  • O. Papaspiliopoulos
  • G. O. Roberts
  • C. Holmes

Abstract

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Suggested Citation

  • C. Yau & O. Papaspiliopoulos & G. O. Roberts & C. Holmes, 2011. "Bayesian non‐parametric hidden Markov models with applications in genomics," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 73(1), pages 37-57, January.
  • Handle: RePEc:bla:jorssb:v:73:y:2011:i:1:p:37-57
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    File URL: http://hdl.handle.net/10.1111/j.1467-9868.2010.00756.x
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    References listed on IDEAS

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    1. Omiros Papaspiliopoulos & Gareth O. Roberts, 2008. "Retrospective Markov chain Monte Carlo methods for Dirichlet process hierarchical models," Biometrika, Biometrika Trust, vol. 95(1), pages 169-186.
    2. Hamilton, James D, 1989. "A New Approach to the Economic Analysis of Nonstationary Time Series and the Business Cycle," Econometrica, Econometric Society, vol. 57(2), pages 357-384, March.
    3. Kim, Chang-Jin, 1994. "Dynamic linear models with Markov-switching," Journal of Econometrics, Elsevier, vol. 60(1-2), pages 1-22.
    4. Teh, Yee Whye & Jordan, Michael I. & Beal, Matthew J. & Blei, David M., 2006. "Hierarchical Dirichlet Processes," Journal of the American Statistical Association, American Statistical Association, vol. 101, pages 1566-1581, December.
    5. Guha, Subharup & Li, Yi & Neuberg, Donna, 2008. "Bayesian Hidden Markov Modeling of Array CGH Data," Journal of the American Statistical Association, American Statistical Association, vol. 103, pages 485-497, June.
    6. Peter J. Green & Sylvia Richardson, 2001. "Modelling Heterogeneity With and Without the Dirichlet Process," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 28(2), pages 355-375, June.
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    Citations

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    Cited by:

    1. Ng, Jason & Forbes, Catherine S. & Martin, Gael M. & McCabe, Brendan P.M., 2013. "Non-parametric estimation of forecast distributions in non-Gaussian, non-linear state space models," International Journal of Forecasting, Elsevier, vol. 29(3), pages 411-430.
    2. Laura Liu, 2018. "Density Forecasts in Panel Data Models : A Semiparametric Bayesian Perspective," Finance and Economics Discussion Series 2018-036, Board of Governors of the Federal Reserve System (U.S.).
    3. Laura Liu, 2017. "Density Forecasts in Panel Models: A semiparametric Bayesian Perspective," PIER Working Paper Archive 17-006, Penn Institute for Economic Research, Department of Economics, University of Pennsylvania, revised 28 Apr 2017.
    4. Chopin, Nicolas & Gadat, Sébastien & Guedj, Benjamin & Guyader, Arnaud & Vernet, Elodie, 2015. "On some recent advances in high dimensional Bayesian Statistics," TSE Working Papers 15-557, Toulouse School of Economics (TSE).
    5. Richard L. Warr & Travis B. Woodfield, 2020. "Bayesian nonparametric estimation of first passage distributions in semi‐Markov processes," Applied Stochastic Models in Business and Industry, John Wiley & Sons, vol. 36(2), pages 237-250, March.
    6. Stefano Favaro & Antonio Lijoi & Igor Prünster, 2012. "On the stick–breaking representation of normalized inverse Gaussian priors," DEM Working Papers Series 008, University of Pavia, Department of Economics and Management.
    7. Boyuan Zhang, 2020. "Forecasting with Bayesian Grouped Random Effects in Panel Data," Papers 2007.02435, arXiv.org, revised Oct 2020.
    8. Xia, Ye-Mao & Tang, Nian-Sheng, 2019. "Bayesian analysis for mixture of latent variable hidden Markov models with multivariate longitudinal data," Computational Statistics & Data Analysis, Elsevier, vol. 132(C), pages 190-211.
    9. F. Bartolucci & A. Farcomeni & F. Pennoni, 2014. "Latent Markov models: a review of a general framework for the analysis of longitudinal data with covariates," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 23(3), pages 433-465, September.
    10. Raffaele Argiento & Matteo Ruggiero, 2018. "Computational challenges and temporal dependence in Bayesian nonparametric models," Statistical Methods & Applications, Springer;Società Italiana di Statistica, vol. 27(2), pages 231-238, June.
    11. Liverani, Silvia & Hastie, David I. & Azizi, Lamiae & Papathomas, Michail & Richardson, Sylvia, 2015. "PReMiuM: An R Package for Profile Regression Mixture Models Using Dirichlet Processes," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 64(i07).
    12. repec:dau:papers:123456789/13438 is not listed on IDEAS

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