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mcp: An R Package for Regression With Multiple Change Points

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  • Lindeløv, Jonas Kristoffer

Abstract

The R package mcp does flexible and informed Bayesian regression with change points. mcp can infer the location of changes between regression models on means, variances, autocorrelation structure, and any combination of these. Prior and posterior samples and summaries are returned for all parameters and a rich set of plotting options is available. Bayes Factors can be computed via Savage-Dickey density ratio and posterior contrasts. Cross-validation can be used for more general model comparison. mcp ships with sensible defaults, including priors, but the user can override them to get finer control of the models and outputs. The strengths and limitations of mcp are discussed in relation to existing change point packages in R.

Suggested Citation

  • Lindeløv, Jonas Kristoffer, 2020. "mcp: An R Package for Regression With Multiple Change Points," OSF Preprints fzqxv, Center for Open Science.
    • Handle: RePEc:osf:osfxxx:fzqxv
    DOI: 10.31219/osf.io/fzqxv
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    References listed on IDEAS

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    1. Carpenter, Bob & Gelman, Andrew & Hoffman, Matthew D. & Lee, Daniel & Goodrich, Ben & Betancourt, Michael & Brubaker, Marcus & Guo, Jiqiang & Li, Peter & Riddell, Allen, 2017. "Stan: A Probabilistic Programming Language," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 76(i01).
    2. Zeileis, Achim & Leisch, Friedrich & Hornik, Kurt & Kleiber, Christian, 2002. "strucchange: An R Package for Testing for Structural Change in Linear Regression Models," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 7(i02).
    3. D. A. Stephens, 1994. "Bayesian Retrospective Multiple‐Changepoint Identification," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 43(1), pages 159-178, March.
    4. Killick, Rebecca & Eckley, Idris A., 2014. "changepoint: An R Package for Changepoint Analysis," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 58(i03).
    5. Zeileis, Achim & Kleiber, Christian & Kramer, Walter & Hornik, Kurt, 2003. "Testing and dating of structural changes in practice," Computational Statistics & Data Analysis, Elsevier, vol. 44(1-2), pages 109-123, October.
    6. Bates, Douglas & Mächler, Martin & Bolker, Ben & Walker, Steve, 2015. "Fitting Linear Mixed-Effects Models Using lme4," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 67(i01).
    7. Marcus R. Munafò & Brian A. Nosek & Dorothy V. M. Bishop & Katherine S. Button & Christopher D. Chambers & Nathalie Percie du Sert & Uri Simonsohn & Eric-Jan Wagenmakers & Jennifer J. Ware & John P. A, 2017. "A manifesto for reproducible science," Nature Human Behaviour, Nature, vol. 1(1), pages 1-9, January.
    8. Ross, Gordon J., 2015. "Parametric and Nonparametric Sequential Change Detection in R: The cpm Package," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 66(i03).
    9. Bradley P. Carlin & Alan E. Gelfand & Adrian F. M. Smith, 1992. "Hierarchical Bayesian Analysis of Changepoint Problems," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 41(2), pages 389-405, June.
    10. James, Nicholas A. & Matteson, David S., 2015. "ecp: An R Package for Nonparametric Multiple Change Point Analysis of Multivariate Data," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 62(i07).
    11. Sangyeol Lee & Jeongcheol Ha & Okyoung Na & Seongryong Na, 2003. "The Cusum Test for Parameter Change in Time Series Models," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 30(4), pages 781-796, December.
    12. Jonah Gabry & Daniel Simpson & Aki Vehtari & Michael Betancourt & Andrew Gelman, 2019. "Visualization in Bayesian workflow," Journal of the Royal Statistical Society Series A, Royal Statistical Society, vol. 182(2), pages 389-402, February.
    13. Erdman, Chandra & Emerson, John W., 2007. "bcp: An R Package for Performing a Bayesian Analysis of Change Point Problems," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 23(i03).
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