IDEAS home Printed from https://ideas.repec.org/a/eee/ecomod/v317y2015icp93-106.html
   My bibliography  Save this article

Bifurcation analysis of an agent-based model for predator–prey interactions

Author

Listed:
  • Colon, C.
  • Claessen, D.
  • Ghil, M.

Abstract

The Rosenzweig–MacArthur model is a set of ordinary differential equations (ODEs) that provides an aggregate description of the dynamics of a predator–prey system. When including an Allee effect on the prey, this model exhibits bistability and contains a pitchfork bifurcation, a Hopf bifurcation and a heteroclinic bifurcation. We develop an agent-based model (ABM) on a two-dimensional, square lattice that encompasses the key assumptions of the aggregate model. Although the two modelling approaches – ODE and ABM – differ, both models exhibit similar bifurcation patterns. The ABM model's behaviour is richer and it is analysed using advanced statistical methods. In particular, singular spectrum analysis is used to robustly locate the transition between apparently random, small-amplitude fluctuations around a fixed point and stable, large-amplitude oscillations. Critical slowing down of model trajectories anticipates the heteroclinic bifurcation. Systematic comparison between the ABM and the ODE models’ behaviour helps one understand the predator–prey system better; it provides guidance in model exploration and allows one to draw more robust conclusions on the nature of predator–prey interactions.

Suggested Citation

  • Colon, C. & Claessen, D. & Ghil, M., 2015. "Bifurcation analysis of an agent-based model for predator–prey interactions," Ecological Modelling, Elsevier, vol. 317(C), pages 93-106.
  • Handle: RePEc:eee:ecomod:v:317:y:2015:i:c:p:93-106
    DOI: 10.1016/j.ecolmodel.2015.09.004
    as

    Download full text from publisher

    File URL: http://www.sciencedirect.com/science/article/pii/S0304380015004111
    Download Restriction: Full text for ScienceDirect subscribers only

    File URL: https://libkey.io/10.1016/j.ecolmodel.2015.09.004?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Grimm, Volker & Berger, Uta & DeAngelis, Donald L. & Polhill, J. Gary & Giske, Jarl & Railsback, Steven F., 2010. "The ODD protocol: A review and first update," Ecological Modelling, Elsevier, vol. 221(23), pages 2760-2768.
    2. Marten Scheffer & Jordi Bascompte & William A. Brock & Victor Brovkin & Stephen R. Carpenter & Vasilis Dakos & Hermann Held & Egbert H. van Nes & Max Rietkerk & George Sugihara, 2009. "Early-warning signals for critical transitions," Nature, Nature, vol. 461(7260), pages 53-59, September.
    3. W. W. Murdoch & B. E. Kendall & R. M. Nisbet & C. J. Briggs & E. McCauley & R. Bolser, 2002. "Single-species models for many-species food webs," Nature, Nature, vol. 417(6888), pages 541-543, May.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Shang, Zuchong & Qiao, Yuanhua & Duan, Lijuan & Miao, Jun, 2021. "Bifurcation analysis and global dynamics in a predator–prey system of Leslie type with an increasing functional response," Ecological Modelling, Elsevier, vol. 455(C).
    2. Alatas, Husin & Nurhimawan, Salamet & Asmat, Fikri & Hardhienata, Hendradi, 2017. "Dynamics of an agent-based opinion model with complete social connectivity network," Chaos, Solitons & Fractals, Elsevier, vol. 101(C), pages 24-32.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Dur, Gaël & Won, Eun-Ji & Han, Jeonghoon & Lee, Jae-Seong & Souissi, Sami, 2021. "An individual-based model for evaluating post-exposure effects of UV-B radiation on zooplankton reproduction," Ecological Modelling, Elsevier, vol. 441(C).
    2. Nisbet, Roger M. & Martin, Benjamin T. & de Roos, Andre M., 2016. "Integrating ecological insight derived from individual-based simulations and physiologically structured population models," Ecological Modelling, Elsevier, vol. 326(C), pages 101-112.
    3. Richter, Andries & Dakos, Vasilis, 2015. "Profit fluctuations signal eroding resilience of natural resources," Ecological Economics, Elsevier, vol. 117(C), pages 12-21.
    4. Tardy, Olivia & Lenglos, Christophe & Lai, Sandra & Berteaux, Dominique & Leighton, Patrick A., 2023. "Rabies transmission in the Arctic: An agent-based model reveals the effects of broad-scale movement strategies on contact risk between Arctic foxes," Ecological Modelling, Elsevier, vol. 476(C).
    5. Vimercati, Giovanni & Hui, Cang & Davies, Sarah J. & Measey, G. John, 2017. "Integrating age structured and landscape resistance models to disentangle invasion dynamics of a pond-breeding anuran," Ecological Modelling, Elsevier, vol. 356(C), pages 104-116.
    6. Jagadish, Arundhati & Dwivedi, Puneet & McEntire, Kira D. & Chandar, Mamta, 2019. "Agent-based modeling of “cleaner” cookstove adoption and woodfuel use: An integrative empirical approach," Forest Policy and Economics, Elsevier, vol. 106(C), pages 1-1.
    7. Karimi Rahjerdi, Bahareh & Ramamoorthy, Ramesh & Nazarimehr, Fahimeh & Rajagopal, Karthikeyan & Jafari, Sajad, 2022. "Indicating the synchronization bifurcation points using the early warning signals in two case studies: Continuous and explosive synchronization," Chaos, Solitons & Fractals, Elsevier, vol. 164(C).
    8. John M Drake & Tobias S Brett & Shiyang Chen & Bogdan I Epureanu & Matthew J Ferrari & Éric Marty & Paige B Miller & Eamon B O’Dea & Suzanne M O’Regan & Andrew W Park & Pejman Rohani, 2019. "The statistics of epidemic transitions," PLOS Computational Biology, Public Library of Science, vol. 15(5), pages 1-14, May.
    9. Hinker, Jonas & Hemkendreis, Christian & Drewing, Emily & März, Steven & Hidalgo Rodríguez, Diego I. & Myrzik, Johanna M.A., 2017. "A novel conceptual model facilitating the derivation of agent-based models for analyzing socio-technical optimality gaps in the energy domain," Energy, Elsevier, vol. 137(C), pages 1219-1230.
    10. Tianran Ding & Wouter Achten, 2023. "Coupling agent-based modeling with territorial LCA to support agricultural land-use planning," ULB Institutional Repository 2013/359527, ULB -- Universite Libre de Bruxelles.
    11. Jascha-Alexander Koch & Jens Lausen & Moritz Kohlhase, 2021. "Internalizing the externalities of overfunding: an agent-based model approach for analyzing the market dynamics on crowdfunding platforms," Journal of Business Economics, Springer, vol. 91(9), pages 1387-1430, November.
    12. James J Elser & Timothy J Elser & Stephen R Carpenter & William A Brock, 2014. "Regime Shift in Fertilizer Commodities Indicates More Turbulence Ahead for Food Security," PLOS ONE, Public Library of Science, vol. 9(5), pages 1-7, May.
    13. Crevier, Lucas Phillip & Salkeld, Joseph H & Marley, Jessa & Parrott, Lael, 2021. "Making the best possible choice: Using agent-based modelling to inform wildlife management in small communities," Ecological Modelling, Elsevier, vol. 446(C).
    14. Roland Clift & Sarah Sim & Henry King & Jonathan L. Chenoweth & Ian Christie & Julie Clavreul & Carina Mueller & Leo Posthuma & Anne-Marie Boulay & Rebecca Chaplin-Kramer & Julia Chatterton & Fabrice , 2017. "The Challenges of Applying Planetary Boundaries as a Basis for Strategic Decision-Making in Companies with Global Supply Chains," Sustainability, MDPI, vol. 9(2), pages 1-23, February.
    15. Ulfia A. Lenfers & Julius Weyl & Thomas Clemen, 2018. "Firewood Collection in South Africa: Adaptive Behavior in Social-Ecological Models," Land, MDPI, vol. 7(3), pages 1-17, August.
    16. David, Viviane & Joachim, Sandrine & Tebby, Cleo & Porcher, Jean-Marc & Beaudouin, Rémy, 2019. "Modelling population dynamics in mesocosms using an individual-based model coupled to a bioenergetics model," Ecological Modelling, Elsevier, vol. 398(C), pages 55-66.
    17. Lorscheid, Iris & Meyer, Matthias, 2016. "Divide and conquer: Configuring submodels for valid and efficient analyses of complex simulation models," Ecological Modelling, Elsevier, vol. 326(C), pages 152-161.
    18. Moritz Kersting & Andreas Bossert & Leif Sörensen & Benjamin Wacker & Jan Chr. Schlüter, 2021. "Predicting effectiveness of countermeasures during the COVID-19 outbreak in South Africa using agent-based simulation," Palgrave Communications, Palgrave Macmillan, vol. 8(1), pages 1-15, December.
    19. Meli, Mattia & Auclerc, Apolline & Palmqvist, Annemette & Forbes, Valery E. & Grimm, Volker, 2013. "Population-level consequences of spatially heterogeneous exposure to heavy metals in soil: An individual-based model of springtails," Ecological Modelling, Elsevier, vol. 250(C), pages 338-351.
    20. Groeneveld, Jürgen & Johst, Karin & Kawaguchi, So & Meyer, Bettina & Teschke, Mathias & Grimm, Volker, 2015. "How biological clocks and changing environmental conditions determine local population growth and species distribution in Antarctic krill (Euphausia superba): a conceptual model," Ecological Modelling, Elsevier, vol. 303(C), pages 78-86.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:eee:ecomod:v:317:y:2015:i:c:p:93-106. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Catherine Liu (email available below). General contact details of provider: http://www.journals.elsevier.com/ecological-modelling .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.