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Gibbs flow for approximate transport with applications to Bayesian computation

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  • Jeremy Heng
  • Arnaud Doucet
  • Yvo Pokern

Abstract

Let π0 and π1 be two distributions on the Borel space (Rd,B(Rd)). Any measurable function T:Rd→Rd such that Y=T(X)∼π1 if X∼π0 is called a transport map from π0 to π1. For any π0 and π1, if one could obtain an analytical expression for a transport map from π0 to π1, then this could be straightforwardly applied to sample from any distribution. One would map draws from an easy‐to‐sample distribution π0 to the target distribution π1 using this transport map. Although it is usually impossible to obtain an explicit transport map for complex target distributions, we show here how to build a tractable approximation of a novel transport map. This is achieved by moving samples from π0 using an ordinary differential equation with a velocity field that depends on the full conditional distributions of the target. Even when this ordinary differential equation is time‐discretised and the full conditional distributions are numerically approximated, the resulting distribution of mapped samples can be efficiently evaluated and used as a proposal within sequential Monte Carlo samplers. We demonstrate significant gains over state‐of‐the‐art sequential Monte Carlo samplers at a fixed computational complexity on a variety of applications.

Suggested Citation

  • Jeremy Heng & Arnaud Doucet & Yvo Pokern, 2021. "Gibbs flow for approximate transport with applications to Bayesian computation," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 83(1), pages 156-187, February.
  • Handle: RePEc:bla:jorssb:v:83:y:2021:i:1:p:156-187
    DOI: 10.1111/rssb.12404
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    References listed on IDEAS

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    1. Pierre Del Moral & Arnaud Doucet & Ajay Jasra, 2006. "Sequential Monte Carlo samplers," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 68(3), pages 411-436, June.
    2. Ole F. Christensen & Gareth O. Roberts & Jeffrey S. Rosenthal, 2005. "Scaling limits for the transient phase of local Metropolis–Hastings algorithms," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 67(2), pages 253-268, April.
    3. Nicolas Chopin, 2002. "A sequential particle filter method for static models," Biometrika, Biometrika Trust, vol. 89(3), pages 539-552, August.
    4. Chris J. Oates & Theodore Papamarkou & Mark Girolami, 2016. "The Controlled Thermodynamic Integral for Bayesian Model Evidence Evaluation," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 111(514), pages 634-645, April.
    5. Pete Bunch & Simon Godsill, 2016. "Approximations of the Optimal Importance Density Using Gaussian Particle Flow Importance Sampling," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 111(514), pages 748-762, April.
    6. Mark Girolami & Ben Calderhead, 2011. "Riemann manifold Langevin and Hamiltonian Monte Carlo methods," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 73(2), pages 123-214, March.
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