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Bayesian Approaches to Modeling the Conditional Dependence Between Multiple Diagnostic Tests

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  • Nandini Dendukuri
  • Lawrence Joseph

Abstract

Summary. Many analyses of results from multiple diagnostic tests assume the tests are statistically independent conditional on the true disease status of the subject. This assumption may be violated in practice, especially in situations where none of the tests is a perfectly accurate gold standard. Classical inference for models accounting for the conditional dependence between tests requires that results from at least four different tests be used in order to obtain an identifiable solution, but it is not always feasible to have results from this many tests. We use a Bayesian approach to draw inferences about the disease prevalence and test properties while adjusting for the possibility of conditional dependence between tests, particularly when we have only two tests. We propose both fixed and random effects models. Since with fewer than four tests the problem is nonidentifiable, the posterior distributions are strongly dependent on the prior information about the test properties and the disease prevalence, even with large sample sizes. If the degree of correlation between the tests is known a priori with high precision, then our methods adjust for the dependence between the tests. Otherwise, our methods provide adjusted inferences that incorporate all of the uncertainty inherent in the problem, typically resulting in wider interval estimates. We illustrate our methods using data from a study on the prevalence of Strongyloides infection among Cambodian refugees to Canada.

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  • Nandini Dendukuri & Lawrence Joseph, 2001. "Bayesian Approaches to Modeling the Conditional Dependence Between Multiple Diagnostic Tests," Biometrics, The International Biometric Society, vol. 57(1), pages 158-167, March.
  • Handle: RePEc:bla:biomet:v:57:y:2001:i:1:p:158-167
    DOI: 10.1111/j.0006-341X.2001.00158.x
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    1. David J. Spiegelhalter & Laurence S. Freedman & Mahesh K. B. Parmar, 1994. "Bayesian Approaches to Randomized Trials," Journal of the Royal Statistical Society Series A, Royal Statistical Society, vol. 157(3), pages 357-387, May.
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    1. Nandini Dendukuri & Ian Schiller & Lawrence Joseph & Madhukar Pai, 2012. "Bayesian Meta-Analysis of the Accuracy of a Test for Tuberculous Pleuritis in the Absence of a Gold Standard Reference," Biometrics, The International Biometric Society, vol. 68(4), pages 1285-1293, December.
    2. Leandro García Barrado & Els Coart & Tomasz Burzykowski, 2017. "Estimation of diagnostic accuracy of a combination of continuous biomarkers allowing for conditional dependence between the biomarkers and the imperfect reference-test," Biometrics, The International Biometric Society, vol. 73(2), pages 646-655, June.
    3. Stamey, James D. & Boese, Doyle H. & Young, Dean M., 2008. "Confidence intervals for parameters of two diagnostic tests in the absence of a gold standard," Computational Statistics & Data Analysis, Elsevier, vol. 52(3), pages 1335-1346, January.
    4. Geoffrey Jones & Wesley O. Johnson, 2016. "A Bayesian Superpopulation Approach to Inference for Finite Populations Based on Imperfect Diagnostic Outcomes," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 21(2), pages 314-327, June.
    5. Gustafson Paul, 2010. "Bayesian Inference for Partially Identified Models," The International Journal of Biostatistics, De Gruyter, vol. 6(2), pages 1-20, March.
    6. Shahieda Adams & Rodney Ehrlich & Roslynn Baatjies & Nandini Dendukuri & Zhuoyu Wang & Keertan Dheda, 2019. "Evaluating Latent Tuberculosis Infection Test Performance Using Latent Class Analysis in a TB and HIV Endemic Setting," IJERPH, MDPI, vol. 16(16), pages 1-11, August.
    7. Scott Weichenthal & Lawrence Joseph & Patrick Bélisle & André Dufresne, 2010. "Bayesian Estimation of the Probability of Asbestos Exposure from Lung Fiber Counts," Biometrics, The International Biometric Society, vol. 66(2), pages 603-612, June.
    8. Min Zhang & Chong Wang & Annette O’Connor, 2021. "A Bayesian approach to modeling antimicrobial multidrug resistance," PLOS ONE, Public Library of Science, vol. 16(12), pages 1-14, December.
    9. Geoffrey Jones & Wesley O. Johnson & Timothy E. Hanson & Ronald Christensen, 2010. "Identifiability of Models for Multiple Diagnostic Testing in the Absence of a Gold Standard," Biometrics, The International Biometric Society, vol. 66(3), pages 855-863, September.
    10. Pierre Bessière & Brandon Hayes & Fabien Filaire & Laetitia Lèbre & Timothée Vergne & Matthieu Pinson & Guillaume Croville & Jean-Luc Guerin, 2023. "Optimizing environmental viral surveillance: bovine serum albumin increases RT-qPCR sensitivity for high pathogenicity avian influenza H5Nx virus detection from dust samples," Post-Print hal-04335181, HAL.
    11. Martin Ladouceur & Elham Rahme & Christian A. Pineau & Lawrence Joseph, 2007. "Robustness of Prevalence Estimates Derived from Misclassified Data from Administrative Databases," Biometrics, The International Biometric Society, vol. 63(1), pages 272-279, March.
    12. O’Neill, Donal, 2015. "Measuring obesity in the absence of a gold standard," Economics & Human Biology, Elsevier, vol. 17(C), pages 116-128.
    13. Nandini Dendukuri & Elham Rahme & Patrick Bélisle & Lawrence Joseph, 2004. "Bayesian Sample Size Determination for Prevalence and Diagnostic Test Studies in the Absence of a Gold Standard Test," Biometrics, The International Biometric Society, vol. 60(2), pages 388-397, June.
    14. Elizabeth R. Brown, 2010. "Bayesian Estimation of the Time-Varying Sensitivity of a Diagnostic Test with Application to Mother-to-Child Transmission of HIV," Biometrics, The International Biometric Society, vol. 66(4), pages 1266-1274, December.
    15. Adam J. Branscum & Dunlei Cheng & J. Jack Lee, 2015. "Testing hypotheses about medical test accuracy: considerations for design and inference," Journal of Applied Statistics, Taylor & Francis Journals, vol. 42(5), pages 1106-1119, May.
    16. Beavers, Daniel P. & Stamey, James D., 2012. "Bayesian sample size determination for binary regression with a misclassified covariate and no gold standard," Computational Statistics & Data Analysis, Elsevier, vol. 56(8), pages 2574-2582.
    17. Paul Gustafson & Sander Greenland, 2006. "The Performance of Random Coefficient Regression in Accounting for Residual Confounding," Biometrics, The International Biometric Society, vol. 62(3), pages 760-768, September.
    18. Adam Branscum & Timothy Hanson & Ian Gardner, 2008. "Bayesian non-parametric models for regional prevalence estimation," Journal of Applied Statistics, Taylor & Francis Journals, vol. 35(5), pages 567-582.
    19. Paul S. Albert & Lori E. Dodd, 2004. "A Cautionary Note on the Robustness of Latent Class Models for Estimating Diagnostic Error without a Gold Standard," Biometrics, The International Biometric Society, vol. 60(2), pages 427-435, June.
    20. Caitlin Ward & Grant D. Brown & Jacob J. Oleson, 2023. "An individual level infectious disease model in the presence of uncertainty from multiple, imperfect diagnostic tests," Biometrics, The International Biometric Society, vol. 79(1), pages 426-436, March.
    21. Hae-Young Kim & Michael G. Hudgens & Jonathan M. Dreyfuss & Daniel J. Westreich & Christopher D. Pilcher, 2007. "Comparison of Group Testing Algorithms for Case Identification in the Presence of Test Error," Biometrics, The International Biometric Society, vol. 63(4), pages 1152-1163, December.
    22. Fabio Principato & Angela Vullo & Domenica Matranga, 2010. "On implementation of the Gibbs sampler for estimating the accuracy of multiple diagnostic tests," Journal of Applied Statistics, Taylor & Francis Journals, vol. 37(8), pages 1335-1354.

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