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Predicting Landscape-Genetic Consequences of Habitat Loss, Fragmentation and Mobility for Multiple Species of Woodland Birds

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Listed:
  • J Nevil Amos
  • Andrew F Bennett
  • Ralph Mac Nally
  • Graeme Newell
  • Alexandra Pavlova
  • James Q Radford
  • James R Thomson
  • Matt White
  • Paul Sunnucks

Abstract

Inference concerning the impact of habitat fragmentation on dispersal and gene flow is a key theme in landscape genetics. Recently, the ability of established approaches to identify reliably the differential effects of landscape structure (e.g. land-cover composition, remnant vegetation configuration and extent) on the mobility of organisms has been questioned. More explicit methods of predicting and testing for such effects must move beyond post hoc explanations for single landscapes and species. Here, we document a process for making a priori predictions, using existing spatial and ecological data and expert opinion, of the effects of landscape structure on genetic structure of multiple species across replicated landscape blocks. We compare the results of two common methods for estimating the influence of landscape structure on effective distance: least-cost path analysis and isolation-by-resistance. We present a series of alternative models of genetic connectivity in the study area, represented by different landscape resistance surfaces for calculating effective distance, and identify appropriate null models. The process is applied to ten species of sympatric woodland-dependant birds. For each species, we rank a priori the expectation of fit of genetic response to the models according to the expected response of birds to loss of structural connectivity and landscape-scale tree-cover. These rankings (our hypotheses) are presented for testing with empirical genetic data in a subsequent contribution. We propose that this replicated landscape, multi-species approach offers a robust method for identifying the likely effects of landscape fragmentation on dispersal.

Suggested Citation

  • J Nevil Amos & Andrew F Bennett & Ralph Mac Nally & Graeme Newell & Alexandra Pavlova & James Q Radford & James R Thomson & Matt White & Paul Sunnucks, 2012. "Predicting Landscape-Genetic Consequences of Habitat Loss, Fragmentation and Mobility for Multiple Species of Woodland Birds," PLOS ONE, Public Library of Science, vol. 7(2), pages 1-12, February.
  • Handle: RePEc:plo:pone00:0030888
    DOI: 10.1371/journal.pone.0030888
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    References listed on IDEAS

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    1. Ilkka Hanski & Otso Ovaskainen, 2000. "The metapopulation capacity of a fragmented landscape," Nature, Nature, vol. 404(6779), pages 755-758, April.
    2. Jørgen Hilden, 1991. "The Area under the ROC Curve and Its Competitors," Medical Decision Making, , vol. 11(2), pages 95-101, June.
    3. Erin L Koen & Colin J Garroway & Paul J Wilson & Jeff Bowman, 2010. "The Effect of Map Boundary on Estimates of Landscape Resistance to Animal Movement," PLOS ONE, Public Library of Science, vol. 5(7), pages 1-8, July.
    4. Ilik Saccheri & Mikko Kuussaari & Maaria Kankare & Pia Vikman & Wilhelm Fortelius & Ilkka Hanski, 1998. "Inbreeding and extinction in a butterfly metapopulation," Nature, Nature, vol. 392(6675), pages 491-494, April.
    5. Driezen, Kassandra & Adriaensen, Frank & Rondinini, Carlo & Doncaster, C. Patrick & Matthysen, Erik, 2007. "Evaluating least-cost model predictions with empirical dispersal data: A case-study using radiotracking data of hedgehogs (Erinaceus europaeus)," Ecological Modelling, Elsevier, vol. 209(2), pages 314-322.
    6. Richard Frankham & Katherine Ralls, 1998. "Inbreeding leads to extinction," Nature, Nature, vol. 392(6675), pages 441-442, April.
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