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Hydrogen and dark oxygen drive microbial productivity in diverse groundwater ecosystems

Author

Listed:
  • S. Emil Ruff

    (University of Calgary
    Marine Biological Laboratory
    Marine Biological Laboratory)

  • Pauline Humez

    (University of Calgary)

  • Isabella Hrabe Angelis

    (University of Calgary
    Max Planck Institute for Chemistry)

  • Muhe Diao

    (University of Calgary)

  • Michael Nightingale

    (University of Calgary)

  • Sara Cho

    (University of Calgary)

  • Liam Connors

    (University of Calgary)

  • Olukayode O. Kuloyo

    (University of Calgary)

  • Alan Seltzer

    (Woods Hole Oceanographic Institution)

  • Samuel Bowman

    (Woods Hole Oceanographic Institution)

  • Scott D. Wankel

    (Woods Hole Oceanographic Institution)

  • Cynthia N. McClain

    (University of Calgary
    Alberta Environment and Protected Areas
    Alberta Biodiversity Monitoring Institute)

  • Bernhard Mayer

    (University of Calgary)

  • Marc Strous

    (University of Calgary)

Abstract

Around 50% of humankind relies on groundwater as a source of drinking water. Here we investigate the age, geochemistry, and microbiology of 138 groundwater samples from 95 monitoring wells (

Suggested Citation

  • S. Emil Ruff & Pauline Humez & Isabella Hrabe Angelis & Muhe Diao & Michael Nightingale & Sara Cho & Liam Connors & Olukayode O. Kuloyo & Alan Seltzer & Samuel Bowman & Scott D. Wankel & Cynthia N. Mc, 2023. "Hydrogen and dark oxygen drive microbial productivity in diverse groundwater ecosystems," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-38523-4
    DOI: 10.1038/s41467-023-38523-4
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    References listed on IDEAS

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    1. Katharina F. Ettwig & Margaret K. Butler & Denis Le Paslier & Eric Pelletier & Sophie Mangenot & Marcel M. M. Kuypers & Frank Schreiber & Bas E. Dutilh & Johannes Zedelius & Dirk de Beer & Jolein Gloe, 2010. "Nitrite-driven anaerobic methane oxidation by oxygenic bacteria," Nature, Nature, vol. 464(7288), pages 543-548, March.
    2. Mohamed F. Haroon & Shihu Hu & Ying Shi & Michael Imelfort & Jurg Keller & Philip Hugenholtz & Zhiguo Yuan & Gene W. Tyson, 2013. "Erratum: Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage," Nature, Nature, vol. 501(7468), pages 578-578, September.
    3. Justine F. Sauvage & Ashton Flinders & Arthur J. Spivack & Robert Pockalny & Ann G. Dunlea & Chloe H. Anderson & David C. Smith & Richard W. Murray & Steven D’Hondt, 2021. "The contribution of water radiolysis to marine sedimentary life," Nature Communications, Nature, vol. 12(1), pages 1-9, December.
    4. Mohamed F. Haroon & Shihu Hu & Ying Shi & Michael Imelfort & Jurg Keller & Philip Hugenholtz & Zhiguo Yuan & Gene W. Tyson, 2013. "Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage," Nature, Nature, vol. 500(7464), pages 567-570, August.
    5. Karthik Anantharaman & Christopher T. Brown & Laura A. Hug & Itai Sharon & Cindy J. Castelle & Alexander J. Probst & Brian C. Thomas & Andrea Singh & Michael J. Wilkins & Ulas Karaoz & Eoin L. Brodie , 2016. "Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system," Nature Communications, Nature, vol. 7(1), pages 1-11, December.
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