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The potential for coupled organic and inorganic sulfur cycles across the terrestrial deep subsurface biosphere

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  • Amanda C. Patsis

    (University of Minnesota - Twin Cities
    University of Minnesota - Twin Cities)

  • Christopher J. Schuler

    (University of Minnesota - Twin Cities
    University of Minnesota - Twin Cities)

  • Brandy M. Toner

    (University of Minnesota - Twin Cities)

  • Cara M. Santelli

    (University of Minnesota - Twin Cities
    University of Minnesota - Twin Cities)

  • Cody S. Sheik

    (University of Minnesota Duluth
    University of Minnesota Duluth)

Abstract

Organosulfur compounds (OrgS) are fundamental components of life’s biomass, yet the cycling of these compounds in the terrestrial deep subsurface, one of Earth’s largest ecosystems, has gone relatively unexplored. Here, we show that all subsurface microbial genomes reconstructed from Soudan Underground Mine State Park have the capacity to cycle organic sulfur species. Our findings suggest that OrgS degradation may be an integral link between the organic and inorganic sulfur cycle via the production of sulfite and sulfide. Furthermore, despite isolation from surface ecosystems, most Soudan microorganisms retained genes for dimethylsulfoniopropionate and taurine biosynthesis. Metagenomic analyses of an additional 54 deep subsurface sites spanning diverse lithologies revealed the capacity for OrgS cycling to be widespread, occurring in 89% of assembled metagenomes. Our results indicate that consideration of OrgS cycling may be necessary to accurately constrain sulfur fluxes, discern the energetic limits of deep life, and determine the impact of deep subsurface biogeochemical sulfur cycling on greater Earth system processes.

Suggested Citation

  • Amanda C. Patsis & Christopher J. Schuler & Brandy M. Toner & Cara M. Santelli & Cody S. Sheik, 2025. "The potential for coupled organic and inorganic sulfur cycles across the terrestrial deep subsurface biosphere," Nature Communications, Nature, vol. 16(1), pages 1-10, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-59241-z
    DOI: 10.1038/s41467-025-59241-z
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    1. Huimin Ye & Sabrina Borusak & Claudia Eberl & Julia Krasenbrink & Anna S. Weiss & Song-Can Chen & Buck T. Hanson & Bela Hausmann & Craig W. Herbold & Manuel Pristner & Benjamin Zwirzitz & Benedikt War, 2023. "Ecophysiology and interactions of a taurine-respiring bacterium in the mouse gut," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    2. Helena Osterholz & Stephanie Turner & Linda J. Alakangas & Eva-Lena Tullborg & Thorsten Dittmar & Birgitta E. Kalinowski & Mark Dopson, 2022. "Terrigenous dissolved organic matter persists in the energy-limited deep groundwaters of the Fennoscandian Shield," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
    3. W. Sunda & D. J. Kieber & R. P. Kiene & S. Huntsman, 2002. "An antioxidant function for DMSP and DMS in marine algae," Nature, Nature, vol. 418(6895), pages 317-320, July.
    4. Mojtaba Fakhraee & Sergei Katsev, 2019. "Organic sulfur was integral to the Archean sulfur cycle," Nature Communications, Nature, vol. 10(1), pages 1-8, December.
    5. S. Emil Ruff & Pauline Humez & Isabella Hrabe Angelis & Muhe Diao & Michael Nightingale & Sara Cho & Liam Connors & Olukayode O. Kuloyo & Alan Seltzer & Samuel Bowman & Scott D. Wankel & Cynthia N. Mc, 2023. "Hydrogen and dark oxygen drive microbial productivity in diverse groundwater ecosystems," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
    6. Karthik Anantharaman & Christopher T. Brown & Laura A. Hug & Itai Sharon & Cindy J. Castelle & Alexander J. Probst & Brian C. Thomas & Andrea Singh & Michael J. Wilkins & Ulas Karaoz & Eoin L. Brodie , 2016. "Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system," Nature Communications, Nature, vol. 7(1), pages 1-11, December.
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