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A widespread group of large plasmids in methanotrophic Methanoperedens archaea

Author

Listed:
  • Marie C. Schoelmerich

    (University of California)

  • Heleen T. Ouboter

    (Radboud University
    Radboud University)

  • Rohan Sachdeva

    (University of California)

  • Petar I. Penev

    (University of California)

  • Yuki Amano

    (Japan Atomic Energy Agency)

  • Jacob West-Roberts

    (University of California)

  • Cornelia U. Welte

    (Radboud University
    Radboud University)

  • Jillian F. Banfield

    (University of California
    University of California
    University of California
    Lawrence Berkeley National Laboratory)

Abstract

Anaerobic methanotrophic (ANME) archaea obtain energy from the breakdown of methane, yet their extrachromosomal genetic elements are little understood. Here we describe large plasmids associated with ANME archaea of the Methanoperedens genus in enrichment cultures and other natural anoxic environments. By manual curation we show that two of the plasmids are large (155,605 bp and 191,912 bp), circular, and may replicate bidirectionally. The plasmids occur in the same copy number as the main chromosome, and plasmid genes are actively transcribed. One of the plasmids encodes three tRNAs, ribosomal protein uL16 and elongation factor eEF2; these genes appear to be missing in the host Methanoperedens genome, suggesting an obligate interdependence between plasmid and host. Our work opens the way for the development of genetic vectors to shed light on the physiology and biochemistry of Methanoperedens, and potentially genetically edit them to enhance growth and accelerate methane oxidation rates.

Suggested Citation

  • Marie C. Schoelmerich & Heleen T. Ouboter & Rohan Sachdeva & Petar I. Penev & Yuki Amano & Jacob West-Roberts & Cornelia U. Welte & Jillian F. Banfield, 2022. "A widespread group of large plasmids in methanotrophic Methanoperedens archaea," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
    • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-34588-9
    DOI: 10.1038/s41467-022-34588-9
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    References listed on IDEAS

    as
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    2. Mohamed F. Haroon & Shihu Hu & Ying Shi & Michael Imelfort & Jurg Keller & Philip Hugenholtz & Zhiguo Yuan & Gene W. Tyson, 2013. "Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage," Nature, Nature, vol. 500(7464), pages 567-570, August.
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