IDEAS home Printed from https://ideas.repec.org/a/eee/jmvana/v105y2012i1p300-310.html
   My bibliography  Save this article

Bayesian analysis of multivariate t linear mixed models using a combination of IBF and Gibbs samplers

Author

Listed:
  • Wang, Wan-Lun
  • Fan, Tsai-Hung

Abstract

The multivariate linear mixed model (MLMM) has become the most widely used tool for analyzing multi-outcome longitudinal data. Although it offers great flexibility for modeling the between- and within-subject correlation among multi-outcome repeated measures, the underlying normality assumption is vulnerable to potential atypical observations. We present a fully Bayesian approach to the multivariate t linear mixed model (MtLMM), which is a robust extension of MLMM with the random effects and errors jointly distributed as a multivariate t distribution. Owing to the introduction of too many hidden variables in the model, the conventional Markov chain Monte Carlo (MCMC) method may converge painfully slowly and thus fails to provide valid inference. To alleviate this problem, a computationally efficient inverse Bayes formulas (IBF) sampler coupled with the Gibbs scheme, called the IBF-Gibbs sampler, is developed and shown to be effective in drawing samples from the target distributions. The issues related to model determination and Bayesian predictive inference for future values are also investigated. The proposed methodologies are illustrated with a real example from an AIDS clinical trial and a careful simulation study.

Suggested Citation

  • Wang, Wan-Lun & Fan, Tsai-Hung, 2012. "Bayesian analysis of multivariate t linear mixed models using a combination of IBF and Gibbs samplers," Journal of Multivariate Analysis, Elsevier, vol. 105(1), pages 300-310.
    • Handle: RePEc:eee:jmvana:v:105:y:2012:i:1:p:300-310
    DOI: 10.1016/j.jmva.2011.10.006
    as

    Download full text from publisher

    File URL: http://www.sciencedirect.com/science/article/pii/S0047259X11002016
    Download Restriction: Full text for ScienceDirect subscribers only
    File URL: https://libkey.io/10.1016/j.jmva.2011.10.006?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Guo‐Liang Tian & Ming Tan & Kai Wang Ng, 2007. "An exact non‐iterative sampling procedure for discrete missing data problems," Statistica Neerlandica, Netherlands Society for Statistics and Operations Research, vol. 61(2), pages 232-242, May.
    2. David J. Spiegelhalter & Nicola G. Best & Bradley P. Carlin & Angelika Van Der Linde, 2002. "Bayesian measures of model complexity and fit," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 64(4), pages 583-639, October.
    3. Xiao Song & Marie Davidian & Anastasios A. Tsiatis, 2002. "A Semiparametric Likelihood Approach to Joint Modeling of Longitudinal and Time-to-Event Data," Biometrics, The International Biometric Society, vol. 58(4), pages 742-753, December.
    4. Kotz,Samuel & Nadarajah,Saralees, 2004. "Multivariate T-Distributions and Their Applications," Cambridge Books, Cambridge University Press, number 9780521826549.
    5. Wang, Wan-Lun & Fan, Tsai-Hung, 2010. "ECM-based maximum likelihood inference for multivariate linear mixed models with autoregressive errors," Computational Statistics & Data Analysis, Elsevier, vol. 54(5), pages 1328-1341, May.
    6. Tan, Ming & Tian, Guo-Liang & Wang Ng, Kai, 2006. "Hierarchical models for repeated binary data using the IBF sampler," Computational Statistics & Data Analysis, Elsevier, vol. 50(5), pages 1272-1286, March.
    7. Tian, Guo-Liang & Tan, Ming, 2003. "Exact statistical solutions using the inverse Bayes formulae," Statistics & Probability Letters, Elsevier, vol. 62(3), pages 305-315, April.
    8. Barndorff-Nielsen, O. & Schou, G., 1973. "On the parametrization of autoregressive models by partial autocorrelations," Journal of Multivariate Analysis, Elsevier, vol. 3(4), pages 408-419, December.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. D. Concordet & R. Servien, 2014. "Individual prediction regions for multivariate longitudinal data with small samples," Biometrics, The International Biometric Society, vol. 70(3), pages 629-638, September.
    2. Firoozeh Rivaz & Majid Jafari Khaledi, 2015. "Bayesian spatial prediction of skew and censored data via a hybrid algorithm," Journal of Applied Statistics, Taylor & Francis Journals, vol. 42(9), pages 1993-2009, September.
    3. Özgür Asar & David Bolin & Peter J. Diggle & Jonas Wallin, 2020. "Linear mixed effects models for non‐Gaussian continuous repeated measurement data," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 69(5), pages 1015-1065, November.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Wan-Lun Wang, 2019. "Mixture of multivariate t nonlinear mixed models for multiple longitudinal data with heterogeneity and missing values," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 28(1), pages 196-222, March.
    2. Contreras-Reyes, Javier E. & López Quintero, Freddy O. & Wiff, Rodrigo, 2018. "Bayesian modeling of individual growth variability using back-calculation: Application to pink cusk-eel (Genypterus blacodes) off Chile," Ecological Modelling, Elsevier, vol. 385(C), pages 145-153.
    3. Jiin Choi & Stewart J. Anderson & Thomas J. Richards & Wesley K. Thompson, 2014. "Prediction of transplant-free survival in idiopathic pulmonary fibrosis patients using joint models for event times and mixed multivariate longitudinal data," Journal of Applied Statistics, Taylor & Francis Journals, vol. 41(10), pages 2192-2205, October.
    4. Elizabeth D. Schifano & Himchan Jeong & Ved Deshpande & Dipak K. Dey, 2021. "Fully and empirical Bayes approaches to estimating copula-based models for bivariate mixed outcomes using Hamiltonian Monte Carlo," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 30(1), pages 133-152, March.
    5. Melkamu Molla Ferede & Samuel Mwalili & Getachew Dagne & Simon Karanja & Workagegnehu Hailu & Mahmoud El-Morshedy & Afrah Al-Bossly, 2022. "A Semiparametric Bayesian Joint Modelling of Skewed Longitudinal and Competing Risks Failure Time Data: With Application to Chronic Kidney Disease," Mathematics, MDPI, vol. 10(24), pages 1-21, December.
    6. Elizabeth R. Brown & Joseph G. Ibrahim & Victor DeGruttola, 2005. "A Flexible B-Spline Model for Multiple Longitudinal Biomarkers and Survival," Biometrics, The International Biometric Society, vol. 61(1), pages 64-73, March.
    7. Hosoe, Nobuhiro & Takagi, Shingo, 2012. "Retail power market competition with endogenous entry decision—An auction data analysis," Journal of the Japanese and International Economies, Elsevier, vol. 26(3), pages 351-368.
    8. Wang, Wan-Lun & Fan, Tsai-Hung, 2010. "ECM-based maximum likelihood inference for multivariate linear mixed models with autoregressive errors," Computational Statistics & Data Analysis, Elsevier, vol. 54(5), pages 1328-1341, May.
    9. Buddhavarapu, Prasad & Bansal, Prateek & Prozzi, Jorge A., 2021. "A new spatial count data model with time-varying parameters," Transportation Research Part B: Methodological, Elsevier, vol. 150(C), pages 566-586.
    10. Mumtaz, Haroon & Theodoridis, Konstantinos, 2017. "Common and country specific economic uncertainty," Journal of International Economics, Elsevier, vol. 105(C), pages 205-216.
    11. Jesse Elliott & Zemin Bai & Shu-Ching Hsieh & Shannon E Kelly & Li Chen & Becky Skidmore & Said Yousef & Carine Zheng & David J Stewart & George A Wells, 2020. "ALK inhibitors for non-small cell lung cancer: A systematic review and network meta-analysis," PLOS ONE, Public Library of Science, vol. 15(2), pages 1-18, February.
    12. Christina Leuker & Thorsten Pachur & Ralph Hertwig & Timothy J. Pleskac, 2019. "Do people exploit risk–reward structures to simplify information processing in risky choice?," Journal of the Economic Science Association, Springer;Economic Science Association, vol. 5(1), pages 76-94, August.
    13. Francois Olivier & Laval Guillaume, 2011. "Deviance Information Criteria for Model Selection in Approximate Bayesian Computation," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 10(1), pages 1-25, July.
    14. Raggi, Davide & Bordignon, Silvano, 2012. "Long memory and nonlinearities in realized volatility: A Markov switching approach," Computational Statistics & Data Analysis, Elsevier, vol. 56(11), pages 3730-3742.
    15. Angelica Gianfreda & Francesco Ravazzolo & Luca Rossini, 2023. "Large Time‐Varying Volatility Models for Hourly Electricity Prices," Oxford Bulletin of Economics and Statistics, Department of Economics, University of Oxford, vol. 85(3), pages 545-573, June.
    16. Rubio, F.J. & Steel, M.F.J., 2011. "Inference for grouped data with a truncated skew-Laplace distribution," Computational Statistics & Data Analysis, Elsevier, vol. 55(12), pages 3218-3231, December.
    17. Alessandri, Piergiorgio & Mumtaz, Haroon, 2019. "Financial regimes and uncertainty shocks," Journal of Monetary Economics, Elsevier, vol. 101(C), pages 31-46.
    18. Padilla, Juan L. & Azevedo, Caio L.N. & Lachos, Victor H., 2018. "Multidimensional multiple group IRT models with skew normal latent trait distributions," Journal of Multivariate Analysis, Elsevier, vol. 167(C), pages 250-268.
    19. Svetlana V. Tishkovskaya & Paul G. Blackwell, 2021. "Bayesian estimation of heterogeneous environments from animal movement data," Environmetrics, John Wiley & Sons, Ltd., vol. 32(6), September.
    20. David Macro & Jeroen Weesie, 2016. "Inequalities between Others Do Matter: Evidence from Multiplayer Dictator Games," Games, MDPI, vol. 7(2), pages 1-23, April.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:eee:jmvana:v:105:y:2012:i:1:p:300-310. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Catherine Liu (email available below). General contact details of provider: http://www.elsevier.com/wps/find/journaldescription.cws_home/622892/description#description .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.