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Content
April 2011, Volume 6, Issue 4
- 1-11 A Collaborative Filtering Approach for Protein-Protein Docking Scoring Functions
by Thomas Bourquard & Julie Bernauer & Jérôme Azé & Anne Poupon - 1-11 Correlating Cell Behavior with Tissue Topology in Embryonic Epithelia
by Sebastian A Sandersius & Manli Chuai & Cornelis J Weijer & Timothy J Newman - 1-11 Evaluating Ortholog Prediction Algorithms in a Yeast Model Clade
by Leonidas Salichos & Antonis Rokas - 1-11 A Topological Framework for the Computation of the HOMFLY Polynomial and Its Application to Proteins
by Federico Comoglio & Maurizio Rinaldi - 1-11 Optimal Resting-Growth Strategies of Microbial Populations in Fluctuating Environments
by Nico Geisel & Jose M G Vilar & J Miguel Rubi - 1-11 The PLIN4 Variant rs8887 Modulates Obesity Related Phenotypes in Humans through Creation of a Novel miR-522 Seed Site
by Kris Richardson & Qiong Louie-Gao & Donna K Arnett & Laurence D Parnell & Chao-Qiang Lai & Alberto Davalos & Caroline S Fox & Serkalem Demissie & L Adrienne Cupples & Carlos Fernandez-Hernando & Jose M Ordovas - 1-12 Ants in a Labyrinth: A Statistical Mechanics Approach to the Division of Labour
by Thomas Owen Richardson & Kim Christensen & Nigel Rigby Franks & Henrik Jeldtoft Jensen & Ana Blagovestova Sendova-Franks - 1-12 Determinants of the Cost-Effectiveness of Intermittent Preventive Treatment for Malaria in Infants and Children
by Amanda Ross & Nicolas Maire & Elisa Sicuri & Thomas Smith & Lesong Conteh - 1-13 Height of Nations: A Socioeconomic Analysis of Cohort Differences and Patterns among Women in 54 Low- to Middle-Income Countries
by S V Subramanian & Emre Özaltin & Jocelyn E Finlay - 1-13 One Problem, Many Solutions: Simple Statistical Approaches Help Unravel the Complexity of the Immune System in an Ecological Context
by Deborah M Buehler & Maaike A Versteegh & Kevin D Matson & B Irene Tieleman - 1-13 Late Byzantine Mineral Soda High Alumina Glasses from Asia Minor: A New Primary Glass Production Group
by Nadine Schibille - 1-14 From Isotropic to Anisotropic Side Chain Representations: Comparison of Three Models for Residue Contact Estimation
by Weitao Sun & Jing He - 1-14 Trust Transitivity in Social Networks
by Oliver Richters & Tiago P Peixoto - 1-14 Assessing the Influence of Different ROI Selection Strategies on Functional Connectivity Analyses of fMRI Data Acquired During Steady-State Conditions
by Guillaume Marrelec & Peter Fransson - 1-15 Scoring Protein Relationships in Functional Interaction Networks Predicted from Sequence Data
by Gaston K Mazandu & Nicola J Mulder - 1-16 First-Line Matched Related Donor Hematopoietic Stem Cell Transplantation Compared to Immunosuppressive Therapy in Acquired Severe Aplastic Anemia
by Frank Peinemann & Ulrich Grouven & Nicolaus Kröger & Carmen Bartel & Max H Pittler & Stefan Lange - 1-18 Finding Statistically Significant Communities in Networks
by Andrea Lancichinetti & Filippo Radicchi & José J Ramasco & Santo Fortunato - 1-19 High-Throughput Protein Expression Using a Combination of Ligation-Independent Cloning (LIC) and Infrared Fluorescent Protein (IFP) Detection
by Hakan Dortay & Usha Madhuri Akula & Christin Westphal & Marie Sittig & Bernd Mueller-Roeber - 1-19 Automated Force Volume Image Processing for Biological Samples
by Pavel Polyakov & Charles Soussen & Junbo Duan & Jérôme F L Duval & David Brie & Grégory Francius
March 2011, Volume 6, Issue 3
- 1-5 Incipient Cognition Solves the Spatial Reciprocity Conundrum of Cooperation
by Jeromos Vukov & Francisco C Santos & Jorge M Pacheco - 1-5 Renal Safety of a Tenofovir-Containing First Line Regimen: Experience from an Antiretroviral Cohort in Rural Lesotho
by Helen Bygrave & Katharina Kranzer & Katherine Hilderbrand & Guillaume Jouquet & Eric Goemaere & Nathalie Vlahakis & Laura Triviño & Lipontso Makakole & Nathan Ford - 1-5 A1C as a Diagnostic Criteria for Diabetes in Low- and Middle-Income Settings: Evidence from Peru
by J Jaime Miranda & Antonio Bernabe-Ortiz & Sanja Stanojevic & German Malaga & Robert H Gilman & Liam Smeeth - 1-5 Beneficial Betrayal Aversion
by Jason A Aimone & Daniel Houser - 1-6 Weight Trimming and Propensity Score Weighting
by Brian K Lee & Justin Lessler & Elizabeth A Stuart - 1-6 Inequalities in Stroke Patients' Management in English Public Hospitals: A Survey on 200,000 Patients
by Antonio Ivan Lazzarino & William Palmer & Alex Bottle & Paul Aylin - 1-7 Usefulness of Dismissing and Changing the Coach in Professional Soccer
by Andreas Heuer & Christian Müller & Oliver Rubner & Norbert Hagemann & Bernd Strauss - 1-7 Role of Androgen Receptor CAG Repeat Polymorphism and X-Inactivation in the Manifestation of Recurrent Spontaneous Abortions in Indian Women
by Meka Aruna & Shilpi Dasgupta & Pisapati V S Sirisha & Sadaranga Andal Bhaskar & Surapaneni Tarakeswari & Lalji Singh & B Mohan Reddy - 1-7 Biology, Methodology or Chance? The Degree Distributions of Bipartite Ecological Networks
by Richard J Williams - 1-7 Cost Effectiveness of a Pharmacy-Only Refill Program in a Large Urban HIV/AIDS Clinic in Uganda
by Joseph B Babigumira & Barbara Castelnuovo & Andy Stergachis & Agnes Kiragga & Petra Shaefer & Mohammed Lamorde & Andrew Kambugu & Alice Muwanga & Louis P Garrison - 1-7 Predicting Phenotypic Severity of Uncertain Gene Variants in the RET Proto-Oncogene
by David K Crockett & Stephen R Piccolo & Perry G Ridge & Rebecca L Margraf & Elaine Lyon & Marc S Williams & Joyce A Mitchell - 1-7 Quantifying Selective Reporting and the Proteus Phenomenon for Multiple Datasets with Similar Bias
by Thomas Pfeiffer & Lars Bertram & John P A Ioannidis - 1-7 Time since Introduction, Seed Mass, and Genome Size Predict Successful Invaders among the Cultivated Vascular Plants of Hawaii
by John Paul Schmidt & John M Drake - 1-8 On-line Randomized Controlled Trial of an Internet Based Psychologically Enhanced Intervention for People with Hazardous Alcohol Consumption
by Paul Wallace & Elizabeth Murray & Jim McCambridge & Zarnie Khadjesari & Ian R White & Simon G Thompson & Eleftheria Kalaitzaki & Christine Godfrey & Stuart Linke - 1-8 Back from a Predicted Climatic Extinction of an Island Endemic: A Future for the Corsican Nuthatch
by Morgane Barbet-Massin & Frédéric Jiguet - 1-8 Nonparametric Evaluation of Dynamic Disease Risk: A Spatio-Temporal Kernel Approach
by Zhijie Zhang & Dongmei Chen & Wenbao Liu & Jeffrey S Racine & SengHuat Ong & Yue Chen & Genming Zhao & Qingwu Jiang - 1-8 Requirements and Design of the PROSPER Protocol for Implementation of Information Infrastructures Supporting Pandemic Response: A Nominal Group Study
by Toomas Timpka & Henrik Eriksson & Elin A Gursky & Magnus Strömgren & Einar Holm & Joakim Ekberg & Olle Eriksson & Anders Grimvall & Lars Valter & James M Nyce - 1-9 Can Antiviral Drugs Contain Pandemic Influenza Transmission?
by Niels G Becker & Dingcheng Wang - 1-9 Genetic Variants on Chromosome 8q24 and Colorectal Neoplasia Risk: A Case-Control Study in China and a Meta-Analysis of the Published Literature
by Mian Li & Yanhong Zhou & Peizhan Chen & Huan Yang & Xiaoyan Yuan & Kazuo Tajima & Jia Cao & Hui Wang - 1-9 A Combined Nucleic Acid and Protein Analysis in Friedreich Ataxia: Implications for Diagnosis, Pathogenesis and Clinical Trial Design
by Francesco Saccà & Giorgia Puorro & Antonella Antenora & Angela Marsili & Alessandra Denaro & Raffaele Piro & Pierpaolo Sorrentino & Chiara Pane & Alessandra Tessa & Vincenzo Brescia Morra & Sergio Cocozza & Giuseppe De Michele & Filippo M Santorelli & Alessandro Filla - 1-9 Tea Consumption Enhances Endothelial-Dependent Vasodilation; a Meta-Analysis
by Rouyanne T Ras & Peter L Zock & Richard Draijer - 1-9 Potential Landscape and Probabilistic Flux of a Predator Prey Network
by Chunhe Li & Erkang Wang & Jin Wang - 1-9 Minding Impacting Events in a Model of Stochastic Variance
by Sílvio M Duarte Queirós & Evaldo M F Curado & Fernando D Nobre - 1-9 Transition between Two Regimes Describing Internal Fluctuation of DNA in a Nanochannel
by Tianxiang Su & Somes K Das & Ming Xiao & Prashant K Purohit - 1-9 A Java Program for LRE-Based Real-Time qPCR that Enables Large-Scale Absolute Quantification
by Robert G Rutledge - 1-9 Noise and Complexity in Human Postural Control: Interpreting the Different Estimations of Entropy
by Christopher K Rhea & Tobin A Silver & S Lee Hong & Joong Hyun Ryu & Breanna E Studenka & Charmayne M L Hughes & Jeffrey M Haddad - 1-10 A New Calibrated Bayesian Internal Goodness-of-Fit Method: Sampled Posterior p-Values as Simple and General p-Values That Allow Double Use of the Data
by Frédéric Gosselin - 1-10 BUGS in the Analysis of Biodiversity Experiments: Species Richness and Composition Are of Similar Importance for Grassland Productivity
by Andy Hector & Thomas Bell & Yann Hautier & Forest Isbell & Marc Kéry & Peter B Reich & Jasper van Ruijven & Bernhard Schmid - 1-10 Short-Term Compassion Training Increases Prosocial Behavior in a Newly Developed Prosocial Game
by Susanne Leiberg & Olga Klimecki & Tania Singer - 1-10 The Neural Substrate and Functional Integration of Uncertainty in Decision Making: An Information Theory Approach
by Joaquín Goñi & Maite Aznárez-Sanado & Gonzalo Arrondo & María Fernández-Seara & Francis R Loayza & Franz H Heukamp & María A Pastor - 1-10 Epistatic Association Mapping in Homozygous Crop Cultivars
by Hai-Yan Lü & Xiao-Fen Liu & Shi-Ping Wei & Yuan-Ming Zhang - 1-10 Determination of Baroreflex Sensitivity during the Modified Oxford Maneuver by Trigonometric Regressive Spectral Analysis
by Julia Gasch & Manja Reimann & Heinz Reichmann & Heinz Rüdiger & Tjalf Ziemssen - 1-10 Hidden Markov Model Analysis of Maternal Behavior Patterns in Inbred and Reciprocal Hybrid Mice
by Valeria Carola & Olivier Mirabeau & Cornelius T Gross - 1-10 Drop-on-Demand Single Cell Isolation and Total RNA Analysis
by Sangjun Moon & Yun-Gon Kim & Lingsheng Dong & Michael Lombardi & Edward Haeggstrom & Roderick V Jensen & Li-Li Hsiao & Utkan Demirci - 1-10 Conserved PCR Primer Set Designing for Closely-Related Species to Complete Mitochondrial Genome Sequencing Using a Sliding Window-Based PSO Algorithm
by Cheng-Hong Yang & Hsueh-Wei Chang & Chang-Hsuan Ho & Yii-Cheng Chou & Li-Yeh Chuang - 1-10 Adherence to Drug-Refill Is a Useful Early Warning Indicator of Virologic and Immunologic Failure among HIV Patients on First-Line ART in South Africa
by Ziad El-Khatib & David Katzenstein & Gaetano Marrone & Fatima Laher & Lerato Mohapi & Max Petzold & Lynn Morris & Anna Mia Ekström - 1-10 Bistability, Probability Transition Rate and First-Passage Time in an Autoactivating Positive-Feedback Loop
by Xiu-Deng Zheng & Xiao-Qian Yang & Yi Tao - 1-11 GOBO: Gene Expression-Based Outcome for Breast Cancer Online
by Markus Ringnér & Erik Fredlund & Jari Häkkinen & Åke Borg & Johan Staaf - 1-11 Are Risky Choices Actually Guided by a Compensatory Process? New Insights from fMRI
by Li-Lin Rao & Yuan Zhou & Lijuan Xu & Zhu-Yuan Liang & Tianzi Jiang & Shu Li - 1-11 Clustering More than Two Million Biomedical Publications: Comparing the Accuracies of Nine Text-Based Similarity Approaches
by Kevin W Boyack & David Newman & Russell J Duhon & Richard Klavans & Michael Patek & Joseph R Biberstine & Bob Schijvenaars & André Skupin & Nianli Ma & Katy Börner - 1-11 Statistically Validated Networks in Bipartite Complex Systems
by Michele Tumminello & Salvatore Miccichè & Fabrizio Lillo & Jyrki Piilo & Rosario N Mantegna - 1-11 Mesoscopic Effects in an Agent-Based Bargaining Model in Regular Lattices
by David J Poza & José I Santos & José M Galán & Adolfo López-Paredes - 1-11 Impact of the Topology of Global Macroeconomic Network on the Spreading of Economic Crises
by Kyu-Min Lee & Jae-Suk Yang & Gunn Kim & Jaesung Lee & Kwang-Il Goh & In-mook Kim - 1-11 Modelling the Costs and Effects of Selective and Universal Hospital Admission Screening for Methicillin-Resistant Staphylococcus aureus
by Gijs Hubben & Martin Bootsma & Michiel Luteijn & Diarmuid Glynn & David Bishai & Marc Bonten & Maarten Postma - 1-12 Integrated Analysis of Multiple Microarray Datasets Identifies a Reproducible Survival Predictor in Ovarian Cancer
by Panagiotis A Konstantinopoulos & Stephen A Cannistra & Helen Fountzilas & Aedin Culhane & Kamana Pillay & Bo Rueda & Daniel Cramer & Michael Seiden & Michael Birrer & George Coukos & Lin Zhang & John Quackenbush & Dimitrios Spentzos - 1-12 CPORT: A Consensus Interface Predictor and Its Performance in Prediction-Driven Docking with HADDOCK
by Sjoerd J de Vries & Alexandre M J J Bonvin - 1-12 Putative EPHX1 Enzyme Activity Is Related with Risk of Lung and Upper Aerodigestive Tract Cancers: A Comprehensive Meta-Analysis
by Xiang Li & Zheng Hu & Xinshun Qu & Jiadong Zhu & Lin Li & Brian Z Ring & Li Su - 1-14 A Comprehensive Benchmark Study of Multiple Sequence Alignment Methods: Current Challenges and Future Perspectives
by Julie D Thompson & Benjamin Linard & Odile Lecompte & Olivier Poch - 1-14 The Contribution of Coevolving Residues to the Stability of KDO8P Synthase
by Sharon H Ackerman & Domenico L Gatti - 1-14 Unifying Gene Expression Measures from Multiple Platforms Using Factor Analysis
by Xin Victoria Wang & Roel G W Verhaak & Elizabeth Purdom & Paul T Spellman & Terence P Speed - 1-14 Multiparameter RNA and Codon Optimization: A Standardized Tool to Assess and Enhance Autologous Mammalian Gene Expression
by Stephan Fath & Asli Petra Bauer & Michael Liss & Anne Spriestersbach & Barbara Maertens & Peter Hahn & Christine Ludwig & Frank Schäfer & Marcus Graf & Ralf Wagner - 1-15 Three-Dimensional Traction Force Microscopy: A New Tool for Quantifying Cell-Matrix Interactions
by Christian Franck & Stacey A Maskarinec & David A Tirrell & Guruswami Ravichandran - 1-15 Combining Gene Signatures Improves Prediction of Breast Cancer Survival
by Xi Zhao & Einar Andreas Rødland & Therese Sørlie & Bjørn Naume & Anita Langerød & Arnoldo Frigessi & Vessela N Kristensen & Anne-Lise Børresen-Dale & Ole Christian Lingjærde - 1-17 Elucidation of Functional Markers from Aspergillus nidulans Developmental Regulator FlbB and Their Phylogenetic Distribution
by Marc S Cortese & Oier Etxebeste & Aitor Garzia & Eduardo A Espeso & Unai Ugalde - 1-18 Cooperation and Contagion in Web-Based, Networked Public Goods Experiments
by Siddharth Suri & Duncan J Watts - 1-21 Dynamic Integration of Reward and Stimulus Information in Perceptual Decision-Making
by Juan Gao & Rebecca Tortell & James L McClelland
February 2011, Volume 6, Issue 2
- 1-6 Calibration Belt for Quality-of-Care Assessment Based on Dichotomous Outcomes
by Stefano Finazzi & Daniele Poole & Davide Luciani & Paola E Cogo & Guido Bertolini - 1-6 An Efficient Method of Modeling Material Properties Using a Thermal Diffusion Analogy: An Example Based on Craniofacial Bone
by Julian L Davis & Elizabeth R Dumont & David S Strait & Ian R Grosse - 1-6 The Effects of Tracking Responses and the Day of Mailing on Physician Survey Response Rate: Three Randomized Trials
by Elie A Akl & Swarna Gaddam & Reem Mustafa & Mark C Wilson & Andrew Symons & Ann Grifasi & Denise McGuigan & Holger J Schünemann - 1-6 Effectiveness of State and Federal Government Agreements with Major Credit Card and Shipping Companies to Block Illegal Internet Cigarette Sales
by Kurt M Ribisl & Rebecca S Williams & Ziya Gizlice & Amy H Herring - 1-7 Differences in Self-Reported Health in the Osteoarthritis Initiative (OAI) and Third National Health and Nutrition Examination Survey (NHANES-III)
by William M Reichmann & Jeffrey N Katz & Elena Losina - 1-7 Virus Infection Suppresses Nicotiana benthamiana Adaptive Phenotypic Plasticity
by Stéphanie Bedhomme & Santiago F Elena - 1-7 Scaling Up Towards International Targets for AIDS, Tuberculosis, and Malaria: Contribution of Global Fund-Supported Programs in 2011–2015
by Itamar Katz & Ryuichi Komatsu & Daniel Low-Beer & Rifat Atun - 1-7 The Affective Impact of Financial Skewness on Neural Activity and Choice
by Charlene C Wu & Peter Bossaerts & Brian Knutson - 1-7 Suicide Seasonality: Complex Demodulation as a Novel Approach in Epidemiologic Analysis
by Ingo W Nader & Jakob Pietschnig & Thomas Niederkrotenthaler & Nestor D Kapusta & Gernot Sonneck & Martin Voracek - 1-7 Association of α-Adducin and G-Protein β3 Genetic Polymorphisms with Hypertension: A Meta-Analysis of Chinese Populations
by Wenquan Niu & Yue Qi - 1-7 Who Is the Best Player Ever? A Complex Network Analysis of the History of Professional Tennis
by Filippo Radicchi - 1-8 Mortality Burden and Socioeconomic Status in India
by June Y T Po & S V Subramanian - 1-8 Objectively Measured Physical Activity and Fat Mass in Children: A Bias-Adjusted Meta-Analysis of Prospective Studies
by Desiree C Wilks & Stephen J Sharp & Ulf Ekelund & Simon G Thompson & Adrian P Mander & Rebecca M Turner & Susan A Jebb & Anna Karin Lindroos - 1-8 Reasons for Declining to Enroll in a Phase I and II HIV Vaccine Trial after Randomization among Eligible Volunteers in Dar es Salaam, Tanzania
by Edith A M Tarimo & Anna Thorson & Thecla W Kohi & Muhammad Bakari & Fred Mhalu & Asli Kulane - 1-8 Identifying Residual Foci of Plasmodium falciparum Infections for Malaria Elimination: The Urban Context of Khartoum, Sudan
by Amal B Nourein & Mohammed A Abass & Abdel Hameed D Nugud & Ibrahim El Hassan & Robert W Snow & Abdisalan M Noor - 1-8 Noise Reduction and Image Quality Improvement of Low Dose and Ultra Low Dose Brain Perfusion CT by HYPR-LR Processing
by Radko Krissak & Charles A Mistretta & Thomas Henzler & Anastasios Chatzikonstantinou & Johann Scharf & Stefan O Schoenberg & Christian Fink - 1-8 Identification of Reference Genes across Physiological States for qRT-PCR through Microarray Meta-Analysis
by Wei-Chung Cheng & Cheng-Wei Chang & Chaang-Ray Chen & Min-Lung Tsai & Wun-Yi Shu & Chia-Yang Li & Ian C Hsu - 1-9 NIH Disease Funding Levels and Burden of Disease
by Leslie A Gillum & Christopher Gouveia & E Ray Dorsey & Mark Pletcher & Colin D Mathers & Charles E McCulloch & S Claiborne Johnston - 1-9 Trust and Reciprocity: Are Effort and Money Equivalent?
by Iris Vilares & Gregory Dam & Konrad Kording - 1-9 An Epidemiological Study of Concomitant Use of Chinese Medicine and Antipsychotics in Schizophrenic Patients: Implication for Herb-Drug Interaction
by Zhang-Jin Zhang & Qing-Rong Tan & Yao Tong & Xue-Yi Wang & Huai-Hai Wang & Lai-Ming Ho & Hei Kiu Wong & Yi-Bin Feng & Di Wang & Roger Ng & Grainne M McAlonan & Chuan-Yue Wang & Vivian Taam Wong - 1-9 Fluid Status in Peritoneal Dialysis Patients: The European Body Composition Monitoring (EuroBCM) Study Cohort
by Wim Van Biesen & John D Williams & Adrian C Covic & Stanley Fan & Kathleen Claes & Monika Lichodziejewska-Niemierko & Christian Verger & Jurg Steiger & Volker Schoder & Peter Wabel & Adelheid Gauly & Rainer Himmele & on behalf of the EuroBCM study group - 1-9 Social Expectations Bias Decision-Making in Uncertain Inter-Personal Situations
by María Ruz & Anna Moser & Kristin Webster - 1-9 Likely Health Outcomes for Untreated Acute Febrile Illness in the Tropics in Decision and Economic Models; A Delphi Survey
by Yoel Lubell & Sarah G Staedke & Brian M Greenwood & Moses R Kamya & Malcolm Molyneux & Paul N Newton & Hugh Reyburn & Robert W Snow & Umberto D'Alessandro & Mike English & Nick Day & Peter Kremsner & Arjen Dondorp & Wilfred Mbacham & Grant Dorsey & Seth Owusu-Agyei & Kathryn Maitland & Sanjeev Krishna & Charles Newton & Geoffrey Pasvol & Terrie Taylor & Lorenz von Seidlein & Nicholas J White & Fred Binka & Anne Mills & Christopher J M Whitty - 1-10 Removing Batch Effects in Analysis of Expression Microarray Data: An Evaluation of Six Batch Adjustment Methods
by Chao Chen & Kay Grennan & Judith Badner & Dandan Zhang & Elliot Gershon & Li Jin & Chunyu Liu - 1-10 Mining Significant Substructure Pairs for Interpreting Polypharmacology in Drug-Target Network
by Ichigaku Takigawa & Koji Tsuda & Hiroshi Mamitsuka - 1-10 Optimization Based Tumor Classification from Microarray Gene Expression Data
by Onur Dagliyan & Fadime Uney-Yuksektepe & I Halil Kavakli & Metin Turkay - 1-10 Nonparametric Sparsification of Complex Multiscale Networks
by Nicholas J Foti & James M Hughes & Daniel N Rockmore - 1-10 On the Origin of Tibetans and Their Genetic Basis in Adapting High-Altitude Environments
by Binbin Wang & Yong-Biao Zhang & Feng Zhang & Hongbin Lin & Xumin Wang & Ning Wan & Zhenqing Ye & Haiyu Weng & Lili Zhang & Xin Li & Jiangwei Yan & Panpan Wang & Tingting Wu & Longfei Cheng & Jing Wang & Duen-Mei Wang & Xu Ma & Jun Yu - 1-11 Metaphors We Think With: The Role of Metaphor in Reasoning
by Paul H Thibodeau & Lera Boroditsky - 1-11 An Updated Algorithm for the Generation of Neutral Landscapes by Spectral Synthesis
by Joseph D Chipperfield & Calvin Dytham & Thomas Hovestadt - 1-11 From Lévy to Brownian: A Computational Model Based on Biological Fluctuation
by Surya G Nurzaman & Yoshio Matsumoto & Yutaka Nakamura & Kazumichi Shirai & Satoshi Koizumi & Hiroshi Ishiguro - 1-11 Different Gain/Loss Sensitivity and Social Adaptation Ability in Gifted Adolescents during a Public Goods Game
by Dongil Chung & Kyongsik Yun & Jin Ho Kim & Bosun Jang & Jaeseung Jeong - 1-12 A Theoretical Exploration of Birhythmicity in the p53-Mdm2 Network
by Wassim Abou-Jaoudé & Madalena Chaves & Jean-Luc Gouzé - 1-12 A Systematic Review and Meta-Analysis of the Efficacy and Safety of Intermittent Preventive Treatment of Malaria in Children (IPTc)
by Anne L Wilson & on behalf of the IPTc Taskforce - 1-14 Distinct Early Molecular Responses to Mutations Causing vLINCL and JNCL Presage ATP Synthase Subunit C Accumulation in Cerebellar Cells
by Yi Cao & John F Staropoli & Sunita Biswas & Janice A Espinola & Marcy E MacDonald & Jong-Min Lee & Susan L Cotman - 1-16 The Impact of Multifunctional Genes on "Guilt by Association" Analysis
by Jesse Gillis & Paul Pavlidis - 1-17 What Are They Up To? The Role of Sensory Evidence and Prior Knowledge in Action Understanding
by Valerian Chambon & Philippe Domenech & Elisabeth Pacherie & Etienne Koechlin & Pierre Baraduc & Chlöé Farrer - 1-20 Generalized Centroid Estimators in Bioinformatics
by Michiaki Hamada & Hisanori Kiryu & Wataru Iwasaki & Kiyoshi Asai
January 2011, Volume 6, Issue 1
- 1-5 A Non-Lévy Random Walk in Chacma Baboons: What Does It Mean?
by Cédric Sueur - 1-5 Clutch Frequency Affects the Offspring Size-Number Trade-Off in Lizards
by Zheng Wang & Yuan Xia & Xiang Ji - 1-6 Temporal Associations between Weather and Headache: Analysis by Empirical Mode Decomposition
by Albert C Yang & Jong-Ling Fuh & Norden E Huang & Ben-Chang Shia & Chung-Kang Peng & Shuu-Jiun Wang - 1-6 Central Line Bundle Implementation in US Intensive Care Units and Impact on Bloodstream Infections
by E Yoko Furuya & Andrew Dick & Eli N Perencevich & Monika Pogorzelska & Donald Goldmann & Patricia W Stone - 1-6 The Social Contagion Effect of Marijuana Use among Adolescents
by Mir M Ali & Aliaksandr Amialchuk & Debra S Dwyer - 1-6 Reliability and Validity of the Ethiopian Version of the Hospital Anxiety and Depression Scale (HADS) in HIV Infected Patients
by Ayalu Aklilu Reda - 1-7 Land-Use Legacies Are Important Determinants of Lake Eutrophication in the Anthropocene
by Bronwyn E Keatley & Elena M Bennett & Graham K MacDonald & Zofia E Taranu & Irene Gregory-Eaves - 1-7 PoolHap: Inferring Haplotype Frequencies from Pooled Samples by Next Generation Sequencing
by Quan Long & Daniel C Jeffares & Qingrun Zhang & Kai Ye & Viktoria Nizhynska & Zemin Ning & Chris Tyler-Smith & Magnus Nordborg - 1-7 Model of Yield Response of Corn to Plant Population and Absorption of Solar Energy
by Allen R Overman & Richard V Scholtz III - 1-7 Timed Picture Naming Norms for Mandarin Chinese
by Youyi Liu & Meiling Hao & Ping Li & Hua Shu - 1-7 ReadDepth: A Parallel R Package for Detecting Copy Number Alterations from Short Sequencing Reads
by Christopher A Miller & Oliver Hampton & Cristian Coarfa & Aleksandar Milosavljevic - 1-7 Cross-Platform Comparison of Microarray-Based Multiple-Class Prediction
by Xiaohui Fan & Li Shao & Hong Fang & Weida Tong & Yiyu Cheng - 1-7 Optimal Homogenization of Perfusion Flows in Microfluidic Bio-Reactors: A Numerical Study
by Fridolin Okkels & Martin Dufva & Henrik Bruus - 1-8 Analysis and Prediction of Translation Rate Based on Sequence and Functional Features of the mRNA
by Tao Huang & Sibao Wan & Zhongping Xu & Yufang Zheng & Kai-Yan Feng & Hai-Peng Li & Xiangyin Kong & Yu-Dong Cai - 1-8 Gene Expression Meta-Analysis Identifies VDAC1 as a Predictor of Poor Outcome in Early Stage Non-Small Cell Lung Cancer
by Claire Grills & Puthen V Jithesh & Jaine Blayney & Shu-Dong Zhang & Dean A Fennell - 1-8 Scalable Rules for Coherent Group Motion in a Gregarious Vertebrate
by Marie-Hélène Pillot & Jacques Gautrais & Patrick Arrufat & Iain D Couzin & Richard Bon & Jean-Louis Deneubourg - 1-8 Connections between Classical and Parametric Network Entropies
by Matthias Dehmer & Abbe Mowshowitz & Frank Emmert-Streib - 1-8 Field of Attention for Instantaneous Object Recognition
by Jian-Gao Yao & Xin Gao & Hong-Mei Yan & Chao-Yi Li - 1-8 Estimating the Power of Indirect Comparisons: A Simulation Study
by Edward J Mills & Isabella Ghement & Christopher O'Regan & Kristian Thorlund - 1-8 Race, Ethnicity, Language, Social Class, and Health Communication Inequalities: A Nationally-Representative Cross-Sectional Study
by Kasisomayajula Viswanath & Leland K Ackerson - 1-8 Dynamic Approach to Space and Habitat Use Based on Biased Random Bridges
by Simon Benhamou - 1-8 Human Mobility Networks, Travel Restrictions, and the Global Spread of 2009 H1N1 Pandemic
by Paolo Bajardi & Chiara Poletto & Jose J Ramasco & Michele Tizzoni & Vittoria Colizza & Alessandro Vespignani - 1-8 Who Tests, Who Doesn't, and Why? Uptake of Mobile HIV Counseling and Testing in the Kilimanjaro Region of Tanzania
by Jan Ostermann & Elizabeth A Reddy & Meghan M Shorter & Charles Muiruri & Antipas Mtalo & Dafrosa K Itemba & Bernard Njau & John A Bartlett & John A Crump & Nathan M Thielman - 1-8 Do Meio- and Macrobenthic Nematodes Differ in Community Composition and Body Weight Trends with Depth?
by Jyotsna Sharma & Jeffrey Baguley & Bodil A Bluhm & Gilbert Rowe - 1-10 Ventilatory Chaos Is Impaired in Carotid Atherosclerosis
by Laurence Mangin & Guy Lesèche & Alain Duprey & Christine Clerici - 1-10 Single-Nucleotide Polymorphisms in LPA Explain Most of the Ancestry-Specific Variation in Lp(a) Levels in African Americans
by Rahul C Deo & James G Wilson & Chao Xing & Kim Lawson & W H Linda Kao & David Reich & Arti Tandon & Ermeg Akylbekova & Nick Patterson & Thomas H Mosley Jr & Eric Boerwinkle & Herman A Taylor Jr - 1-10 Optimizing Tactics for Use of the U.S. Antiviral Strategic National Stockpile for Pandemic Influenza
by Nedialko B Dimitrov & Sebastian Goll & Nathaniel Hupert & Babak Pourbohloul & Lauren Ancel Meyers - 1-10 Predicting Functions of Proteins in Mouse Based on Weighted Protein-Protein Interaction Network and Protein Hybrid Properties
by Lele Hu & Tao Huang & Xiaohe Shi & Wen-Cong Lu & Yu-Dong Cai & Kuo-Chen Chou - 1-10 Noise-Induced Modulation of the Relaxation Kinetics around a Non-Equilibrium Steady State of Non-Linear Chemical Reaction Networks
by Rajesh Ramaswamy & Ivo F Sbalzarini & Nélido González-Segredo - 1-11 Sequence Alignment, Mutual Information, and Dissimilarity Measures for Constructing Phylogenies
by Orion Penner & Peter Grassberger & Maya Paczuski - 1-11 Extending the Implicit Association Test (IAT): Assessing Consumer Attitudes Based on Multi-Dimensional Implicit Associations
by Valentin Gattol & Maria Sääksjärvi & Claus-Christian Carbon - 1-11 Figure Text Extraction in Biomedical Literature
by Daehyun Kim & Hong Yu - 1-11 Variance Component Analysis of a Multi-Site Study for the Reproducibility of Multiple Reaction Monitoring Measurements of Peptides in Human Plasma
by Jessie Q Xia & Nell Sedransk & Xingdong Feng - 1-11 An Enhanced Probabilistic LDA for Multi-Class Brain Computer Interface
by Peng Xu & Ping Yang & Xu Lei & Dezhong Yao - 1-11 Education Modifies Genetic and Environmental Influences on BMI
by Wendy Johnson & Kirsten Ohm Kyvik & Axel Skytthe & Ian J Deary & Thorkild I A Sørensen - 1-13 Childhood Socioeconomic Position and Objectively Measured Physical Capability Levels in Adulthood: A Systematic Review and Meta-Analysis
by Kate Birnie & Rachel Cooper & Richard M Martin & Diana Kuh & Avan Aihie Sayer & Beatriz E Alvarado & Antony Bayer & Kaare Christensen & Sung-il Cho & Cyrus Cooper & Janie Corley & Leone Craig & Ian J Deary & Panayotes Demakakos & Shah Ebrahim & John Gallacher & Alan J Gow & David Gunnell & Steven Haas & Tomas Hemmingsson & Hazel Inskip & Soong-nang Jang & Kenya Noronha & Merete Osler & Alberto Palloni & Finn Rasmussen & Brigitte Santos-Eggimann & Jacques Spagnoli & John Starr & Andrew Steptoe & Holly Syddall & Per Tynelius & David Weir & Lawrence J Whalley & Maria Victoria Zunzunegui & Yoav Ben-Shlomo & Rebecca Hardy & on behalf of the HALCyon study team - 1-14 Control Strategies for Endemic Childhood Scabies
by Stephen J Gilmore - 1-14 Novel Analysis of Oceanic Surface Water Metagenomes Suggests Importance of Polyphosphate Metabolism in Oligotrophic Environments
by Ben Temperton & Jack A Gilbert & John P Quinn & John W McGrath - 1-16 Network Structure Implied by Initial Axon Outgrowth in Rodent Cortex: Empirical Measurement and Models
by Diarmuid J Cahalane & Barbara Clancy & Marcy A Kingsbury & Ethan Graf & Olaf Sporns & Barbara L Finlay - 1-17 Computing the Partition Function for Kinetically Trapped RNA Secondary Structures
by William A Lorenz & Peter Clote - 1-18 Molecular Basis for Vulnerability to Mitochondrial and Oxidative Stress in a Neuroendocrine CRI-G1 Cell Line
by Natasha Chandiramani & Xianhong Wang & Marta Margeta - 1-18 QAPgrid: A Two Level QAP-Based Approach for Large-Scale Data Analysis and Visualization
by Mario Inostroza-Ponta & Regina Berretta & Pablo Moscato
December 2010, Volume 5, Issue 12
- 1-5 Identification of C16orf74 as a Marker of Progression in Primary Non-Muscle Invasive Bladder Cancer
by Won Tae Kim & Seok Joong Yun & Cheol Park & Isaac Yi Kim & Sung-Kwon Moon & Tae Gyun Kwon & Yung Hyun Choi & Wun-Jae Kim - 1-5 Shift Work Is Not Associated with High Blood Pressure or Prevalence of Hypertension
by Carla Sfreddo & Sandra Costa Fuchs & Álvaro Roberto Merlo & Flávio Danni Fuchs - 1-5 Visualizing the Effects of rTMS in a Patient Sample: Small N vs. Group Level Analysis
by Teresa Jacobson Kimberley & Richard P Di Fabio - 1-6 Pervasiveness of the IQ Rise: A Cross-Temporal Meta-Analysis
by Jakob Pietschnig & Martin Voracek & Anton K Formann - 1-6 ‘SGoFicance Trace’: Assessing Significance in High Dimensional Testing Problems
by Jacobo de Uña-Alvarez & Antonio Carvajal-Rodriguez - 1-6 Validity of the Dictionary of Occupational Titles for Assessing Upper Extremity Work Demands
by Lonneke Opsteegh & Remko Soer & Heleen A Reinders-Messelink & Michiel F Reneman & Corry K van der Sluis - 1-6 Individual and Contextual Determinants of Regional Variation in Prescription Drug Use: An Analysis of Administrative Data from British Columbia
by Steven G Morgan & Colleen M Cunningham & Gillian E Hanley - 1-6 Cliophysics: Socio-Political Reliability Theory, Polity Duration and African Political (In)stabilities
by Alhaji Cherif & Kamal Barley - 1-6 The Structure of the EU Mediasphere
by Ilias Flaounas & Marco Turchi & Omar Ali & Nick Fyson & Tijl De Bie & Nick Mosdell & Justin Lewis & Nello Cristianini - 1-6 Redrawing the Map of Great Britain from a Network of Human Interactions
by Carlo Ratti & Stanislav Sobolevsky & Francesco Calabrese & Clio Andris & Jonathan Reades & Mauro Martino & Rob Claxton & Steven H Strogatz - 1-7 Evolutionary Distances in the Twilight Zone—A Rational Kernel Approach
by Roland F Schwarz & William Fletcher & Frank Förster & Benjamin Merget & Matthias Wolf & Jörg Schultz & Florian Markowetz - 1-7 “I'm Worth More than That”: Trait Positivity Predicts Increased Rejection of Unfair Financial Offers
by Barnaby D Dunn & Dasha Makarova & David Evans & Luke Clark - 1-7 Image Enhancement for Tracking the Translucent Larvae of Drosophila melanogaster
by Sukant Khurana & Wen-Ke Li & Nigel S Atkinson - 1-7 Environmental and Lifestyle Factors Associated with Perceived Facial Age in Chinese Women
by Andrew E Mayes & Peter G Murray & David A Gunn & Cyrena C Tomlin & Sharon D Catt & Yi B Wen & Li P Zhou & Hong Q Wang & Michael Catt & Stewart P Granger - 1-8 Order through Disorder: Hyper-Mobile C-Terminal Residues Stabilize the Folded State of a Helical Peptide. A Molecular Dynamics Study
by Kalliopi K Patapati & Nicholas M Glykos - 1-8 Stochastic Competition between Mechanistically Independent Slippage and Death Pathways Determines Cell Fate during Mitotic Arrest
by Hsiao-Chun Huang & Timothy J Mitchison & Jue Shi - 1-8 Microarray-Based Maps of Copy-Number Variant Regions in European and Sub-Saharan Populations
by Christian Vogler & Leo Gschwind & Benno Röthlisberger & Andreas Huber & Isabel Filges & Peter Miny & Bianca Auschra & Attila Stetak & Philippe Demougin & Vanja Vukojevic & Iris-Tatjana Kolassa & Thomas Elbert & Dominique J-F de Quervain & Andreas Papassotiropoulos - 1-8 Heterogeneous Aspirations Promote Cooperation in the Prisoner's Dilemma Game
by Matjaž Perc & Zhen Wang - 1-8 Gene Regulatory Networks from Multifactorial Perturbations Using Graphical Lasso: Application to the DREAM4 Challenge
by Patricia Menéndez & Yiannis A I Kourmpetis & Cajo J F ter Braak & Fred A van Eeuwijk - 1-9 Multiscale Modeling of Light Absorption in Tissues: Limitations of Classical Homogenization Approach
by Stephane Mottin & Grigory Panasenko & S Sivaji Ganesh - 1-9 Humans and Insects Decide in Similar Ways
by Philippe Louâpre & Jacques J M van Alphen & Jean-Sébastien Pierre - 1-9 Multi Locus Sequence Typing of Chlamydia Reveals an Association between Chlamydia psittaci Genotypes and Host Species
by Yvonne Pannekoek & Veerle Dickx & Delphine S A Beeckman & Keith A Jolley & Wendy C Keijzers & Evangelia Vretou & Martin C J Maiden & Daisy Vanrompay & Arie van der Ende - 1-9 Topological Traps Control Flow on Real Networks: The Case of Coordination Failures
by Carlos P Roca & Sergi Lozano & Alex Arenas & Angel Sánchez - 1-9 Defecting or Not Defecting: How to “Read” Human Behavior during Cooperative Games by EEG Measurements
by Fabrizio De Vico Fallani & Vincenzo Nicosia & Roberta Sinatra & Laura Astolfi & Febo Cincotti & Donatella Mattia & Christopher Wilke & Alex Doud & Vito Latora & Bin He & Fabio Babiloni - 1-10 Multimorbidity Patterns in the Elderly: A New Approach of Disease Clustering Identifies Complex Interrelations between Chronic Conditions
by Ingmar Schäfer & Eike-Christin von Leitner & Gerhard Schön & Daniela Koller & Heike Hansen & Tina Kolonko & Hanna Kaduszkiewicz & Karl Wegscheider & Gerd Glaeske & Hendrik van den Bussche - 1-10 The Effect of Algorithms on Copy Number Variant Detection
by Debby W Tsuang & Steven P Millard & Benjamin Ely & Peter Chi & Kenneth Wang & Wendy H Raskind & Sulgi Kim & Zoran Brkanac & Chang-En Yu - 1-10 How Human Brucellosis Incidence in Urban Kampala Can Be Reduced Most Efficiently? A Stochastic Risk Assessment of Informally-Marketed Milk
by Kohei Makita & Eric M Fèvre & Charles Waiswa & Mark C Eisler & Susan C Welburn - 1-10 Hierarchical State-Space Estimation of Leatherback Turtle Navigation Ability
by Joanna Mills Flemming & Ian D Jonsen & Ransom A Myers & Christopher A Field - 1-11 High Accuracy Decoding of Movement Target Direction in Non-Human Primates Based on Common Spatial Patterns of Local Field Potentials
by Nuri F Ince & Rahul Gupta & Sami Arica & Ahmed H Tewfik & James Ashe & Giuseppe Pellizzer - 1-11 Power Law versus Exponential State Transition Dynamics: Application to Sleep-Wake Architecture
by Jesse Chu-Shore & M Brandon Westover & Matt T Bianchi - 1-11 Zipf's Law Leads to Heaps' Law: Analyzing Their Relation in Finite-Size Systems
by Linyuan Lü & Zi-Ke Zhang & Tao Zhou - 1-14 Dominating Clasp of the Financial Sector Revealed by Partial Correlation Analysis of the Stock Market
by Dror Y Kenett & Michele Tumminello & Asaf Madi & Gitit Gur-Gershgoren & Rosario N Mantegna & Eshel Ben-Jacob
November 2010, Volume 5, Issue 11
- 1-4 Multi-locus Test Conditional on Confirmed Effects Leads to Increased Power in Genome-wide Association Studies
by Li Ma & Shizhong Han & Jing Yang & Yang Da - 1-5 ‘Disease, Disaster and Despair’? The Presentation of Health in Low- and Middle-Income Countries on Australian Television
by Michelle Imison & Simon Chapman - 1-5 Swarm Intelligence in Animal Groups: When Can a Collective Out-Perform an Expert?
by Konstantinos V Katsikopoulos & Andrew J King - 1-6 Neighborhood Socioeconomic Deprivation and Mortality: NIH-AARP Diet and Health Study
by Jacqueline M Major & Chyke A Doubeni & Neal D Freedman & Yikyung Park & Min Lian & Albert R Hollenbeck & Arthur Schatzkin & Barry I Graubard & Rashmi Sinha - 1-6 An Analysis of Preliminary and Post-Discussion Priority Scores for Grant Applications Peer Reviewed by the Center for Scientific Review at the NIH
by Michael R Martin & Andrea Kopstein & Joy M Janice - 1-6 Global Health: A Successful Context for Precollege Training and Advocacy
by Ana L Gervassi & Laura J Collins & Theresa B Britschgi - 1-7 Biomechanical Consequences of Rapid Evolution in the Polar Bear Lineage
by Graham J Slater & Borja Figueirido & Leeann Louis & Paul Yang & Blaire Van Valkenburgh - 1-7 The Structure of Borders in a Small World
by Christian Thiemann & Fabian Theis & Daniel Grady & Rafael Brune & Dirk Brockmann - 1-7 Structure of Rat Ultrasonic Vocalizations and Its Relevance to Behavior
by Nobuaki Takahashi & Makio Kashino & Naoyuki Hironaka - 1-7 Patients' Costs and Cost-Effectiveness of Tuberculosis Treatment in DOTS and Non-DOTS Facilities in Rio de Janeiro, Brazil
by Ricardo Steffen & Dick Menzies & Olivia Oxlade & Marcia Pinto & Analia Zuleika de Castro & Paula Monteiro & Anete Trajman