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Bayesian Model Selection for Longitudinal Count Data

Author

Listed:
  • Oludare Ariyo

    (Interuniversity Institute for Biostatistics and Statistical Bioinformatics (I-BioStat)
    Federal University of Agriculture)

  • Emmanuel Lesaffre

    (Interuniversity Institute for Biostatistics and Statistical Bioinformatics (I-BioStat))

  • Geert Verbeke

    (Interuniversity Institute for Biostatistics and Statistical Bioinformatics (I-BioStat))

  • Adrian Quintero

    (Icfes - Colombian Institute for Educational Evaluation)

Abstract

We explore the performance of three popular model-selection criteria for generalised linear mixed-effects models (GLMMs) for longitudinal count data (LCD). We focus on evaluating the conditional criteria (given the random effects) versus the marginal criteria (averaging over the random effects) in selecting the appropriate data-generating model. We advocate the use of marginal criteria, since Bayesian statisticians often use the conditional criteria despite previous warnings. We discuss how to compute the marginal criteria for LCD by a replication method and importance sampling algorithm. Besides, we show via simulations to what extent we err when using the conditional criteria instead of the marginal criteria. To promote the usage of the marginal criteria, we developed an R function that computes the marginal criteria for longitudinal models based on samples from the posterior distribution. Finally, we illustrate the advantages of the marginal criteria on a well-known data set of patients who have epilepsy.

Suggested Citation

  • Oludare Ariyo & Emmanuel Lesaffre & Geert Verbeke & Adrian Quintero, 2022. "Bayesian Model Selection for Longitudinal Count Data," Sankhya B: The Indian Journal of Statistics, Springer;Indian Statistical Institute, vol. 84(2), pages 516-547, November.
  • Handle: RePEc:spr:sankhb:v:84:y:2022:i:2:d:10.1007_s13571-021-00268-9
    DOI: 10.1007/s13571-021-00268-9
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    References listed on IDEAS

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    1. Oludare Ariyo & Adrian Quintero & Johanna Muñoz & Geert Verbeke & Emmanuel Lesaffre, 2020. "Bayesian model selection in linear mixed models for longitudinal data," Journal of Applied Statistics, Taylor & Francis Journals, vol. 47(5), pages 890-913, April.
    2. Aregay, Mehreteab & Shkedy, Ziv & Molenberghs, Geert, 2013. "A hierarchical Bayesian approach for the analysis of longitudinal count data with overdispersion: A simulation study," Computational Statistics & Data Analysis, Elsevier, vol. 57(1), pages 233-245.
    3. Yong Li & Zeng Tao & Jun Yu, "undated". "Robust Deviance Information Criterion for Latent Variable Models," Working Papers CoFie-04-2012, Singapore Management University, Sim Kee Boon Institute for Financial Economics.
    4. Koehler, Elizabeth & Brown, Elizabeth & Haneuse, Sebastien J.-P. A., 2009. "On the Assessment of Monte Carlo Error in Simulation-Based Statistical Analyses," The American Statistician, American Statistical Association, vol. 63(2), pages 155-162.
    5. Hinde, John & Demetrio, Clarice G. B., 1998. "Overdispersion: Models and estimation," Computational Statistics & Data Analysis, Elsevier, vol. 27(2), pages 151-170, April.
    6. Chan, Joshua C.C. & Grant, Angelia L., 2016. "Fast computation of the deviance information criterion for latent variable models," Computational Statistics & Data Analysis, Elsevier, vol. 100(C), pages 847-859.
    7. Russell B. Millar, 2009. "Comparison of Hierarchical Bayesian Models for Overdispersed Count Data using DIC and Bayes' Factors," Biometrics, The International Biometric Society, vol. 65(3), pages 962-969, September.
    8. Håvard Rue & Sara Martino & Nicolas Chopin, 2009. "Approximate Bayesian inference for latent Gaussian models by using integrated nested Laplace approximations," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 71(2), pages 319-392, April.
    9. N. E. Breslow, 1984. "Extra‐Poisson Variation in Log‐Linear Models," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 33(1), pages 38-44, March.
    10. David J. Spiegelhalter & Nicola G. Best & Bradley P. Carlin & Angelika Linde, 2014. "The deviance information criterion: 12 years on," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 76(3), pages 485-493, June.
    11. Florin Vaida & Suzette Blanchard, 2005. "Conditional Akaike information for mixed-effects models," Biometrika, Biometrika Trust, vol. 92(2), pages 351-370, June.
    12. David J. Spiegelhalter & Nicola G. Best & Bradley P. Carlin & Angelika Van Der Linde, 2002. "Bayesian measures of model complexity and fit," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 64(4), pages 583-639, October.
    13. Joshua C. C. Chan & Angelia L. Grant, 2016. "On the Observed-Data Deviance Information Criterion for Volatility Modeling," Journal of Financial Econometrics, Oxford University Press, vol. 14(4), pages 772-802.
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