IDEAS home Printed from https://ideas.repec.org/a/plo/pone00/0277771.html
   My bibliography  Save this article

Kazak mitochondrial genomes provide insights into the human population history of Central Eurasia

Author

Listed:
  • Ayken Askapuli
  • Miguel Vilar
  • Humberto Garcia-Ortiz
  • Maxat Zhabagin
  • Zhaxylyk Sabitov
  • Ainur Akilzhanova
  • Erlan Ramanculov
  • Uli Schamiloglu
  • Angelica Martinez-Hernandez
  • Cecilia Contreras-Cubas
  • Francisco Barajas-Olmos
  • Theodore G Schurr
  • Zhaxybay Zhumadilov
  • Marlen Flores-Huacuja
  • Lorena Orozco
  • John Hawks
  • Naruya Saitou

Abstract

As a historical nomadic group in Central Asia, Kazaks have mainly inhabited the steppe zone from the Altay Mountains in the East to the Caspian Sea in the West. Fine scale characterization of the genetic profile and population structure of Kazaks would be invaluable for understanding their population history and modeling prehistoric human expansions across the Eurasian steppes. With this mind, we characterized the maternal lineages of 200 Kazaks from Jetisuu at mitochondrial genome level. Our results reveal that Jetisuu Kazaks have unique mtDNA haplotypes including those belonging to the basal branches of both West Eurasian (R0, H, HV) and East Eurasian (A, B, C, D) lineages. The great diversity observed in their maternal lineages may reflect pivotal geographic location of Kazaks in Eurasia and implies a complex history for this population. Comparative analyses of mitochondrial genomes of human populations in Central Eurasia reveal a common maternal genetic ancestry for Turko-Mongolian speakers and their expansion being responsible for the presence of East Eurasian maternal lineages in Central Eurasia. Our analyses further indicate maternal genetic affinity between the Sherpas from the Tibetan Plateau with the Turko-Mongolian speakers.

Suggested Citation

  • Ayken Askapuli & Miguel Vilar & Humberto Garcia-Ortiz & Maxat Zhabagin & Zhaxylyk Sabitov & Ainur Akilzhanova & Erlan Ramanculov & Uli Schamiloglu & Angelica Martinez-Hernandez & Cecilia Contreras-Cub, 2022. "Kazak mitochondrial genomes provide insights into the human population history of Central Eurasia," PLOS ONE, Public Library of Science, vol. 17(11), pages 1-32, November.
  • Handle: RePEc:plo:pone00:0277771
    DOI: 10.1371/journal.pone.0277771
    as

    Download full text from publisher

    File URL: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0277771
    Download Restriction: no

    File URL: https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0277771&type=printable
    Download Restriction: no

    File URL: https://libkey.io/10.1371/journal.pone.0277771?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Wickham, Hadley, 2007. "Reshaping Data with the reshape Package," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 21(i12).
    2. Martina Unterländer & Friso Palstra & Iosif Lazaridis & Aleksandr Pilipenko & Zuzana Hofmanová & Melanie Groß & Christian Sell & Jens Blöcher & Karola Kirsanow & Nadin Rohland & Benjamin Rieger & Elke, 2017. "Ancestry and demography and descendants of Iron Age nomads of the Eurasian Steppe," Nature Communications, Nature, vol. 8(1), pages 1-10, April.
    3. repec:plo:pcbi00:1003537 is not listed on IDEAS
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Augustinus, Benno A. & Blum, Moshe & Citterio, Sandra & Gentili, Rodolfo & Helman, David & Nestel, David & Schaffner, Urs & Müller-Schärer, Heinz & Lensky, Itamar M., 2022. "Ground-truthing predictions of a demographic model driven by land surface temperatures with a weed biocontrol cage experiment," Ecological Modelling, Elsevier, vol. 466(C).
    2. Julio Cesar Alonso Cifuentes & Jaime Andres Carabali, 2019. "Breve Tuturial para visualizar y Calcular Métricas de Redes (grafos) en R (para Económisas)," Icesi Economics Lecture Notes 18170, Universidad Icesi.
    3. Miller, Christine M.F. & Waterhouse, Hannah & Harter, Thomas & Fadel, James G. & Meyer, Deanne, 2020. "Quantifying the uncertainty in nitrogen application and groundwater nitrate leaching in manure based cropping systems," Agricultural Systems, Elsevier, vol. 184(C).
    4. Sarlas, Georgios & Páez, Antonio & Axhausen, Kay W., 2020. "Betweenness-accessibility: Estimating impacts of accessibility on networks," Journal of Transport Geography, Elsevier, vol. 84(C).
    5. Marin FOTACHE & Florin DUMITRU & Valerica GREAVU-SERBAN, 2015. "An Information Systems Master Programme in Romania. Some Commonalities and Specificities," Informatica Economica, Academy of Economic Studies - Bucharest, Romania, vol. 19(3), pages 5-18.
    6. Martijn Van Heel & Dinska Van Gucht & Koen Vanbrabant & Frank Baeyens, 2017. "The Importance of Conditioned Stimuli in Cigarette and E-Cigarette Craving Reduction by E-Cigarettes," IJERPH, MDPI, vol. 14(2), pages 1-18, February.
    7. Sean McKenzie & Hilary Parkinson & Jane Mangold & Mary Burrows & Selena Ahmed & Fabian Menalled, 2018. "Perceptions, Experiences, and Priorities Supporting Agroecosystem Management Decisions Differ among Agricultural Producers, Consultants, and Researchers," Sustainability, MDPI, vol. 10(11), pages 1-19, November.
    8. Milad Abbasiharofteh & Tom Broekel, 2021. "Still in the shadow of the wall? The case of the Berlin biotechnology cluster," Environment and Planning A, , vol. 53(1), pages 73-94, February.
    9. Martín Alfredo Legarreta-González & César A. Meza-Herrera & Rafael Rodríguez-Martínez & Darithsa Loya-González & Carlos Servando Chávez-Tiznado & Viridiana Contreras-Villarreal & Francisco Gerardo Vél, 2024. "Selecting a Time-Series Model to Predict Drinking Water Extraction in a Semi-Arid Region in Chihuahua, Mexico," Sustainability, MDPI, vol. 16(22), pages 1-22, November.
    10. Jill F. Lundell & Brennan Bean & Jürgen Symanzik, 2023. "Let’s talk about the weather: a cluster-based approach to weather forecast accuracy," Computational Statistics, Springer, vol. 38(3), pages 1135-1155, September.
    11. Andee J. Kaplan & Eric R. Hare, 2019. "Putting down roots: a graphical exploration of community attachment," Computational Statistics, Springer, vol. 34(4), pages 1449-1464, December.
    12. Sarah E. Harris & Maria S. Alexis & Gilbert Giri & Francisco F. Cavazos & Yue Hu & Jernej Murn & Maria M. Aleman & Christopher B. Burge & Daniel Dominguez, 2024. "Understanding species-specific and conserved RNA-protein interactions in vivo and in vitro," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
    13. Haider, Saira M. & Benscoter, Allison M. & Pearlstine, Leonard & D'Acunto, Laura E. & Romañach, Stephanie S., 2021. "Landscape-scale drivers of endangered Cape Sable Seaside Sparrow (Ammospiza maritima mirabilis) presence using an ensemble modeling approach," Ecological Modelling, Elsevier, vol. 461(C).
    14. Senka Čaušević & Manupriyam Dubey & Marian Morales & Guillem Salazar & Vladimir Sentchilo & Nicolas Carraro & Hans-Joachim Ruscheweyh & Shinichi Sunagawa & Jan Roelof van der Meer, 2024. "Niche availability and competitive loss by facilitation control proliferation of bacterial strains intended for soil microbiome interventions," Nature Communications, Nature, vol. 15(1), pages 1-19, December.
    15. Fox, John & Carvalho, Marilia S., 2012. "The RcmdrPlugin.survival Package: Extending the R Commander Interface to Survival Analysis," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 49(i07).
    16. C. J. Torrecilla-Salinas & O. Troyer & M. J. Escalona & M. Mejías, 2019. "A Delphi-based expert judgment method applied to the validation of a mature Agile framework for Web development projects," Information Technology and Management, Springer, vol. 20(1), pages 9-40, March.
    17. Priyanga Dilini Talagala & Rob J Hyndman & Kate Smith-Miles & Sevvandi Kandanaarachchi & Mario A Munoz, 2018. "Anomaly detection in streaming nonstationary temporal data," Monash Econometrics and Business Statistics Working Papers 4/18, Monash University, Department of Econometrics and Business Statistics.
    18. Thelma Dede Baddoo & Zhijia Li & Yiqing Guan & Kenneth Rodolphe Chabi Boni & Isaac Kwesi Nooni, 2020. "Data-Driven Modeling and the Influence of Objective Function Selection on Model Performance in Limited Data Regions," IJERPH, MDPI, vol. 17(11), pages 1-26, June.
    19. Luiz A. Domeignoz-Horta & Seraina L. Cappelli & Rashmi Shrestha & Stephanie Gerin & Annalea K. Lohila & Jussi Heinonsalo & Daniel B. Nelson & Ansgar Kahmen & Pengpeng Duan & David Sebag & Eric Verrecc, 2024. "Plant diversity drives positive microbial associations in the rhizosphere enhancing carbon use efficiency in agricultural soils," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    20. Paul J McMurdie & Susan Holmes, 2014. "Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible," PLOS Computational Biology, Public Library of Science, vol. 10(4), pages 1-12, April.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pone00:0277771. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: plosone (email available below). General contact details of provider: https://journals.plos.org/plosone/ .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.