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Stochastic block models: A comparison of variants and inference methods

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  • Thorben Funke
  • Till Becker

Abstract

Finding communities in complex networks is a challenging task and one promising approach is the Stochastic Block Model (SBM). But the influences from various fields led to a diversity of variants and inference methods. Therefore, a comparison of the existing techniques and an independent analysis of their capabilities and weaknesses is needed. As a first step, we review the development of different SBM variants such as the degree-corrected SBM of Karrer and Newman or Peixoto’s hierarchical SBM. Beside stating all these variants in a uniform notation, we show the reasons for their development. Knowing the variants, we discuss a variety of approaches to infer the optimal partition like the Metropolis-Hastings algorithm. We perform our analysis based on our extension of the Girvan-Newman test and the Lancichinetti-Fortunato-Radicchi benchmark as well as a selection of some real world networks. Using these results, we give some guidance to the challenging task of selecting an inference method and SBM variant. In addition, we give a simple heuristic to determine the number of steps for the Metropolis-Hastings algorithms that lack a usual stop criterion. With our comparison, we hope to guide researches in the field of SBM and highlight the problem of existing techniques to focus future research. Finally, by making our code freely available, we want to promote a faster development, integration and exchange of new ideas.

Suggested Citation

  • Thorben Funke & Till Becker, 2019. "Stochastic block models: A comparison of variants and inference methods," PLOS ONE, Public Library of Science, vol. 14(4), pages 1-40, April.
  • Handle: RePEc:plo:pone00:0215296
    DOI: 10.1371/journal.pone.0215296
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    References listed on IDEAS

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    1. Liao, Hao & Zeng, An & Zhang, Yi-Cheng, 2015. "Predicting missing links via correlation between nodes," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 436(C), pages 216-223.
    2. Paolo Barucca & Fabrizio Lillo, 2018. "The organization of the interbank network and how ECB unconventional measures affected the e-MID overnight market," Computational Management Science, Springer, vol. 15(1), pages 33-53, January.
    3. Aaron Clauset & Cristopher Moore & M. E. J. Newman, 2008. "Hierarchical structure and the prediction of missing links in networks," Nature, Nature, vol. 453(7191), pages 98-101, May.
    4. Catherine Matias & Vincent Miele, 2017. "Statistical clustering of temporal networks through a dynamic stochastic block model," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 79(4), pages 1119-1141, September.
    5. Kehui Chen & Jing Lei, 2018. "Network Cross-Validation for Determining the Number of Communities in Network Data," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 113(521), pages 241-251, January.
    6. Barucca, Paolo & Lillo, Fabrizio, 2016. "Disentangling bipartite and core-periphery structure in financial networks," Chaos, Solitons & Fractals, Elsevier, vol. 88(C), pages 244-253.
    7. M. E. J. Newman & Aaron Clauset, 2016. "Structure and inference in annotated networks," Nature Communications, Nature, vol. 7(1), pages 1-11, September.
    8. Roger Guimerà & Alejandro Llorente & Esteban Moro & Marta Sales-Pardo, 2012. "Predicting Human Preferences Using the Block Structure of Complex Social Networks," PLOS ONE, Public Library of Science, vol. 7(9), pages 1-7, September.
    9. Dragana M Pavlovic & Petra E Vértes & Edward T Bullmore & William R Schafer & Thomas E Nichols, 2014. "Stochastic Blockmodeling of the Modules and Core of the Caenorhabditis elegans Connectome," PLOS ONE, Public Library of Science, vol. 9(7), pages 1-16, July.
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    2. Luiz G. A. Alves & Higor Y. D. Sigaki & Matjaz Perc & Haroldo V. Ribeiro, 2020. "Collective dynamics of stock market efficiency," Papers 2011.14809, arXiv.org.
    3. Agnes Norris Keiller, 2020. "Detecting labour submarkets from worker-mobility networks: a preliminary study," IFS Working Papers W20/30, Institute for Fiscal Studies.
    4. Matjašič, Miha & Cugmas, Marjan & Žiberna, Aleš, 2021. "blockmodeling: an R package for Generalized Blockmodeling," SocArXiv b8cxp, Center for Open Science.

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