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Influenza Forecasting in Human Populations: A Scoping Review

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  • Jean-Paul Chretien
  • Dylan George
  • Jeffrey Shaman
  • Rohit A Chitale
  • F Ellis McKenzie

Abstract

Forecasts of influenza activity in human populations could help guide key preparedness tasks. We conducted a scoping review to characterize these methodological approaches and identify research gaps. Adapting the PRISMA methodology for systematic reviews, we searched PubMed, CINAHL, Project Euclid, and Cochrane Database of Systematic Reviews for publications in English since January 1, 2000 using the terms “influenza AND (forecast* OR predict*)”, excluding studies that did not validate forecasts against independent data or incorporate influenza-related surveillance data from the season or pandemic for which the forecasts were applied. We included 35 publications describing population-based (N = 27), medical facility-based (N = 4), and regional or global pandemic spread (N = 4) forecasts. They included areas of North America (N = 15), Europe (N = 14), and/or Asia-Pacific region (N = 4), or had global scope (N = 3). Forecasting models were statistical (N = 18) or epidemiological (N = 17). Five studies used data assimilation methods to update forecasts with new surveillance data. Models used virological (N = 14), syndromic (N = 13), meteorological (N = 6), internet search query (N = 4), and/or other surveillance data as inputs. Forecasting outcomes and validation metrics varied widely. Two studies compared distinct modeling approaches using common data, 2 assessed model calibration, and 1 systematically incorporated expert input. Of the 17 studies using epidemiological models, 8 included sensitivity analysis. This review suggests need for use of good practices in influenza forecasting (e.g., sensitivity analysis); direct comparisons of diverse approaches; assessment of model calibration; integration of subjective expert input; operational research in pilot, real-world applications; and improved mutual understanding among modelers and public health officials.

Suggested Citation

  • Jean-Paul Chretien & Dylan George & Jeffrey Shaman & Rohit A Chitale & F Ellis McKenzie, 2014. "Influenza Forecasting in Human Populations: A Scoping Review," PLOS ONE, Public Library of Science, vol. 9(4), pages 1-8, April.
  • Handle: RePEc:plo:pone00:0094130
    DOI: 10.1371/journal.pone.0094130
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    References listed on IDEAS

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    1. Teresa K Yamana & Sasikiran Kandula & Jeffrey Shaman, 2017. "Individual versus superensemble forecasts of seasonal influenza outbreaks in the United States," PLOS Computational Biology, Public Library of Science, vol. 13(11), pages 1-17, November.
    2. Christoph Zimmer & Reza Yaesoubi & Ted Cohen, 2017. "A Likelihood Approach for Real-Time Calibration of Stochastic Compartmental Epidemic Models," PLOS Computational Biology, Public Library of Science, vol. 13(1), pages 1-21, January.
    3. Prashant Rangarajan & Sandeep K Mody & Madhav Marathe, 2019. "Forecasting dengue and influenza incidences using a sparse representation of Google trends, electronic health records, and time series data," PLOS Computational Biology, Public Library of Science, vol. 15(11), pages 1-24, November.
    4. David C Farrow & Logan C Brooks & Sangwon Hyun & Ryan J Tibshirani & Donald S Burke & Roni Rosenfeld, 2017. "A human judgment approach to epidemiological forecasting," PLOS Computational Biology, Public Library of Science, vol. 13(3), pages 1-19, March.
    5. Evan L Ray & Nicholas G Reich, 2018. "Prediction of infectious disease epidemics via weighted density ensembles," PLOS Computational Biology, Public Library of Science, vol. 14(2), pages 1-23, February.
    6. Logan C Brooks & David C Farrow & Sangwon Hyun & Ryan J Tibshirani & Roni Rosenfeld, 2018. "Nonmechanistic forecasts of seasonal influenza with iterative one-week-ahead distributions," PLOS Computational Biology, Public Library of Science, vol. 14(6), pages 1-29, June.
    7. Michal Ben-Nun & Pete Riley & James Turtle & David P Bacon & Steven Riley, 2019. "Forecasting national and regional influenza-like illness for the USA," PLOS Computational Biology, Public Library of Science, vol. 15(5), pages 1-20, May.
    8. Zeynep Ertem & Dorrie Raymond & Lauren Ancel Meyers, 2018. "Optimal multi-source forecasting of seasonal influenza," PLOS Computational Biology, Public Library of Science, vol. 14(9), pages 1-16, September.
    9. Ibrahim Musa & Hyun Woo Park & Lkhagvadorj Munkhdalai & Keun Ho Ryu, 2018. "Global Research on Syndromic Surveillance from 1993 to 2017: Bibliometric Analysis and Visualization," Sustainability, MDPI, vol. 10(10), pages 1-20, September.
    10. Soo Beom Choi & Juhyeon Kim & Insung Ahn, 2019. "Forecasting type-specific seasonal influenza after 26 weeks in the United States using influenza activities in other countries," PLOS ONE, Public Library of Science, vol. 14(11), pages 1-15, November.
    11. Nicholas G Reich & Craig J McGowan & Teresa K Yamana & Abhinav Tushar & Evan L Ray & Dave Osthus & Sasikiran Kandula & Logan C Brooks & Willow Crawford-Crudell & Graham Casey Gibson & Evan Moore & Reb, 2019. "Accuracy of real-time multi-model ensemble forecasts for seasonal influenza in the U.S," PLOS Computational Biology, Public Library of Science, vol. 15(11), pages 1-19, November.
    12. Logan C Brooks & David C Farrow & Sangwon Hyun & Ryan J Tibshirani & Roni Rosenfeld, 2015. "Flexible Modeling of Epidemics with an Empirical Bayes Framework," PLOS Computational Biology, Public Library of Science, vol. 11(8), pages 1-18, August.
    13. Ioanna Miliou & Xinyue Xiong & Salvatore Rinzivillo & Qian Zhang & Giulio Rossetti & Fosca Giannotti & Dino Pedreschi & Alessandro Vespignani, 2021. "Predicting seasonal influenza using supermarket retail records," PLOS Computational Biology, Public Library of Science, vol. 17(7), pages 1-18, July.
    14. Michael S Deiner & Lee Worden & Alex Rittel & Sarah F Ackley & Fengchen Liu & Laura Blum & James C Scott & Thomas M Lietman & Travis C Porco, 2017. "Short-term leprosy forecasting from an expert opinion survey," PLOS ONE, Public Library of Science, vol. 12(8), pages 1-13, August.
    15. Kyle S Hickmann & Geoffrey Fairchild & Reid Priedhorsky & Nicholas Generous & James M Hyman & Alina Deshpande & Sara Y Del Valle, 2015. "Forecasting the 2013–2014 Influenza Season Using Wikipedia," PLOS Computational Biology, Public Library of Science, vol. 11(5), pages 1-29, May.
    16. Koutsellis, Themistoklis & Nikas, Alexandros, 2020. "A predictive model and country risk assessment for COVID-19: An application of the Limited Failure Population concept," Chaos, Solitons & Fractals, Elsevier, vol. 140(C).

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