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The Chloranthus sessilifolius genome provides insight into early diversification of angiosperms

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Listed:
  • Jianxiang Ma

    (Lanzhou University)

  • Pengchuan Sun

    (Sichuan University)

  • Dandan Wang

    (Lanzhou University)

  • Zhenyue Wang

    (Lanzhou University)

  • Jiao Yang

    (Lanzhou University)

  • Ying Li

    (Lanzhou University)

  • Wenjie Mu

    (Lanzhou University)

  • Renping Xu

    (Lanzhou University)

  • Ying Wu

    (Lanzhou University)

  • Congcong Dong

    (Lanzhou University)

  • Nawal Shrestha

    (Lanzhou University)

  • Jianquan Liu

    (Lanzhou University
    Sichuan University)

  • Yongzhi Yang

    (Lanzhou University)

Abstract

Most extant angiosperms belong to Mesangiospermae, which comprises eudicots, monocots, magnoliids, Chloranthales and Ceratophyllales. However, phylogenetic relationships between these five lineages remain unclear. Here, we report the high-quality genome of a member of the Chloranthales lineage (Chloranthus sessilifolius). We detect only one whole genome duplication within this species and find that polyploidization events in different Mesangiospermae lineage are mutually independent. We also find that the members of all floral development-related gene lineages are present in C. sessilifolius despite its extremely simplified flower. The AP1 and PI genes, however, show a weak floral tissue-specialized expression. Our phylogenomic analyses suggest that Chloranthales and magnoliids are sister groups, and both are together sister to the clade comprising Ceratophyllales and eudicots, while the monocot lineage is sister to all other Mesangiospermae. Our findings suggest that in addition to hybridization, incomplete lineage sorting may largely account for phylogenetic inconsistencies between the observed gene trees.

Suggested Citation

  • Jianxiang Ma & Pengchuan Sun & Dandan Wang & Zhenyue Wang & Jiao Yang & Ying Li & Wenjie Mu & Renping Xu & Ying Wu & Congcong Dong & Nawal Shrestha & Jianquan Liu & Yongzhi Yang, 2021. "The Chloranthus sessilifolius genome provides insight into early diversification of angiosperms," Nature Communications, Nature, vol. 12(1), pages 1-13, December.
    • Handle: RePEc:nat:natcom:v:12:y:2021:i:1:d:10.1038_s41467-021-26931-3
    DOI: 10.1038/s41467-021-26931-3
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    1. Zhiping Yang & Xiaoya Ma & Qiuping Wang & Xiaolin Tian & Jingyan Sun & Zhenhua Zhang & Shuhai Xiao & Olivier Clerck & Frederik Leliaert & Bojian Zhong, 2023. "Phylotranscriptomics unveil a Paleoproterozoic-Mesoproterozoic origin and deep relationships of the Viridiplantae," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    2. Ben Liao & You-Huang Xiang & Yan Li & Kai-Yang Yang & Jun-Xiang Shan & Wang-Wei Ye & Nai-Qian Dong & Yi Kan & Yi-Bing Yang & Huai-Yu Zhao & Hong-Xiao Yu & Zi-Qi Lu & Yan Zhao & Qiang Zhao & Dongling G, 2024. "Dysfunction of duplicated pair rice histone acetyltransferases causes segregation distortion and an interspecific reproductive barrier," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
    3. Xing Guo & Fang Wang & Dongming Fang & Qiongqiong Lin & Sunil Kumar Sahu & Liuming Luo & Jiani Li & Yewen Chen & Shanshan Dong & Sisi Chen & Yang Liu & Shixiao Luo & Yalong Guo & Huan Liu, 2023. "The genome of Acorus deciphers insights into early monocot evolution," Nature Communications, Nature, vol. 14(1), pages 1-15, December.

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