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Assessment of Genetic Diversity of Bread Wheat Genotypes for Drought Tolerance Using Canopy Reflectance-Based Phenotyping and SSR Marker-Based Genotyping

Author

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  • Mohammed Mohi-Ud-Din

    (Department of Crop Botany, Bangladesh Agricultural University, Mymensingh 2202, Bangladesh
    Department of Crop Botany, Bangabandhu Sheikh Mujibur Rahman Agricultural University, Gazipur 1706, Bangladesh)

  • Md. Alamgir Hossain

    (Department of Crop Botany, Bangladesh Agricultural University, Mymensingh 2202, Bangladesh)

  • Md. Motiar Rohman

    (Plant Breeding Division, Bangladesh Agricultural Research Institute, Gazipur 1701, Bangladesh)

  • Md. Nesar Uddin

    (Department of Crop Botany, Bangladesh Agricultural University, Mymensingh 2202, Bangladesh)

  • Md. Sabibul Haque

    (Department of Crop Botany, Bangladesh Agricultural University, Mymensingh 2202, Bangladesh)

  • Eldessoky S. Dessoky

    (Department of Biology, College of Science, Taif University, P.O. Box 11099, Taif 21944, Saudi Arabia)

  • Mohammed Alqurashi

    (Department of Biotechnology, College of Science, Taif University, P.O. Box 11099, Taif 21944, Saudi Arabia)

  • Salman Aloufi

    (Department of Biotechnology, College of Science, Taif University, P.O. Box 11099, Taif 21944, Saudi Arabia)

Abstract

This study investigated the genetic diversity of bread-wheat genotypes using canopy reflectance-based vegetation indices (VIs) and simple sequence repeat (SSR) marker-based genotyping for drought tolerance. A total of 56 wheat genotypes were assessed using phenotypic traits (combination of VIs and yield traits) and 30 SSR markers. The data of the phenotypic traits were averaged over two growing seasons under irrigated and drought-stressed conditions. The hierarchical clustering of the wheat genotypes unveiled three drought-tolerant groups. Cluster 1 genotypes showed minimal phenotypic alterations, conferring superior drought tolerance and yield stability than clusters 2 and 3. The polymorphism information content values for the SSR markers ranged from 0.434 to 0.932, averaging 0.83. A total of 458 alleles (18.32 alleles per locus) were detected, with the most polymorphic markers, wmc177 and wms292 , having the most alleles (24). A comparative study of SSR diversity among phenotypic clusters indicated that genotypes under cluster 1 had higher genetic diversity (0.879) and unique alleles (47%), suggesting their potential in future breeding programs. The unweighted neighbor-joining tree grouped the wheat genotypes into five major clusters. Wheat genotypes from all phenotypic clusters were distributed throughout all SSR-based clusters, indicating that genetically heterogeneous genotypes were allocated to different drought-tolerant groups. However, SSR-based clusters and model-based populations showed significant co-linearity (86.7%). The findings of the present study suggest that combining reflectance-based indirect phenotyping with SSR-based genotyping might be an effective technique for assessing genetic diversity to improve the drought tolerance of bread-wheat genotypes.

Suggested Citation

  • Mohammed Mohi-Ud-Din & Md. Alamgir Hossain & Md. Motiar Rohman & Md. Nesar Uddin & Md. Sabibul Haque & Eldessoky S. Dessoky & Mohammed Alqurashi & Salman Aloufi, 2022. "Assessment of Genetic Diversity of Bread Wheat Genotypes for Drought Tolerance Using Canopy Reflectance-Based Phenotyping and SSR Marker-Based Genotyping," Sustainability, MDPI, vol. 14(16), pages 1-19, August.
    • Handle: RePEc:gam:jsusta:v:14:y:2022:i:16:p:9818-:d:883764
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    References listed on IDEAS

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    1. Nicola G Criscuolo & Claudia Angelini, 2020. "StructuRly: A novel shiny app to produce comprehensive, detailed and interactive plots for population genetic analysis," PLOS ONE, Public Library of Science, vol. 15(2), pages 1-12, February.
    2. Christopher R. Schwalm & William R. L. Anderegg & Anna M. Michalak & Joshua B. Fisher & Franco Biondi & George Koch & Marcy Litvak & Kiona Ogle & John D. Shaw & Adam Wolf & Deborah N. Huntzinger & Kev, 2017. "Global patterns of drought recovery," Nature, Nature, vol. 548(7666), pages 202-205, August.
    3. Bates, Douglas & Mächler, Martin & Bolker, Ben & Walker, Steve, 2015. "Fitting Linear Mixed-Effects Models Using lme4," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 67(i01).
    4. Ankita Pandey & Rinki Khobra & Harohalli Masthigowda Mamrutha & Zeenat Wadhwa & Gopalareddy Krishnappa & Gyanendra Singh & Gyanendra Pratap Singh, 2022. "Elucidating the Drought Responsiveness in Wheat Genotypes," Sustainability, MDPI, vol. 14(7), pages 1-20, March.
    5. Alireza Pour-Aboughadareh & Reza Mohammadi & Alireza Etminan & Lia Shooshtari & Neda Maleki-Tabrizi & Peter Poczai, 2020. "Effects of Drought Stress on Some Agronomic and Morpho-Physiological Traits in Durum Wheat Genotypes," Sustainability, MDPI, vol. 12(14), pages 1-14, July.
    6. El-Hendawy, Salah E. & Hassan, Wael M. & Al-Suhaibani, Nasser A. & Schmidhalter, Urs, 2017. "Spectral assessment of drought tolerance indices and grain yield in advanced spring wheat lines grown under full and limited water irrigation," Agricultural Water Management, Elsevier, vol. 182(C), pages 1-12.
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