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Statistical analysis of gene regulatory networks reconstructed from gene expression data of lung cancer

Author

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  • Sun, Lanfang
  • Jiang, Lu
  • Li, Menghui
  • He, Dacheng

Abstract

Recently, inferring gene regulatory network from large-scale gene expression data has been considered as an important effort to understand the life system in whole. In this paper, for the purpose of getting further information about lung cancer, a gene regulatory network of lung cancer is reconstructed from gene expression data. In this network, vertices represent genes and edges between any two vertices represent their co-regulatory relationships. It is found that this network has some characteristics which are shared by most cellular networks of health lives, such as power-law, small-world behaviors. On the other hand, it also presents some features which are obviously different from other networks, such as assortative mixing. In the last section of this paper, the significance of these findings in the context of biological processes of lung cancer is discussed.

Suggested Citation

  • Sun, Lanfang & Jiang, Lu & Li, Menghui & He, Dacheng, 2006. "Statistical analysis of gene regulatory networks reconstructed from gene expression data of lung cancer," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 370(2), pages 663-671.
    • Handle: RePEc:eee:phsmap:v:370:y:2006:i:2:p:663-671
    DOI: 10.1016/j.physa.2006.02.034
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    1. Hołyst, Janusz A. & Sienkiewicz, Julian & Fronczak, Agata & Fronczak, Piotr & Suchecki, Krzysztof, 2005. "Scaling of distances in correlated complex networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 351(1), pages 167-174.
    2. Andreas Wagner, 2001. "The Yeast Protein Interaction Network Evolves Rapidly and Contains Few Redundant Duplicate Genes," Working Papers 01-04-022, Santa Fe Institute.
    3. Réka Albert & Hawoong Jeong & Albert-László Barabási, 2000. "Error and attack tolerance of complex networks," Nature, Nature, vol. 406(6794), pages 378-382, July.
    4. H. Jeong & B. Tombor & R. Albert & Z. N. Oltvai & A.-L. Barabási, 2000. "The large-scale organization of metabolic networks," Nature, Nature, vol. 407(6804), pages 651-654, October.
    5. Leland H. Hartwell & John J. Hopfield & Stanislas Leibler & Andrew W. Murray, 1999. "From molecular to modular cell biology," Nature, Nature, vol. 402(6761), pages 47-52, December.
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    Cited by:

    1. Tomovski, Igor & Kocarev, Ljupčo, 2015. "Network topology inference from infection statistics," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 436(C), pages 272-285.

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