Model perpetuation by designing and documenting models and workflows so that they can be reused and further developed by others: The case of multiple stressors in ecology
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DOI: 10.1016/j.ecolmodel.2025.111029
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- Volker Grimm & Steven F. Railsback & Christian E. Vincenot & Uta Berger & Cara Gallagher & Donald L. DeAngelis & Bruce Edmonds & Jiaqi Ge & Jarl Giske & Jürgen Groeneveld & Alice S.A. Johnston & Alex, 2020. "The ODD Protocol for Describing Agent-Based and Other Simulation Models: A Second Update to Improve Clarity, Replication, and Structural Realism," Journal of Artificial Societies and Social Simulation, Journal of Artificial Societies and Social Simulation, vol. 23(2), pages 1-7.
- Meier, Laura & Brauns, Mario & Grimm, Volker & Weitere, Markus & Frank, Karin, 2022. "MASTIFF: A mechanistic model for cross-scale analyses of the functioning of multiple stressed riverine ecosystems," Ecological Modelling, Elsevier, vol. 470(C).
- Grimm, Volker & Berger, Uta & DeAngelis, Donald L. & Polhill, J. Gary & Giske, Jarl & Railsback, Steven F., 2010. "The ODD protocol: A review and first update," Ecological Modelling, Elsevier, vol. 221(23), pages 2760-2768.
- Martin, Adrian P. & Dominguez, Angela Bahamondes & Baker, Chelsey A. & Baumas, Chloé M.J. & Bisson, Kelsey M. & Cavan, Emma & Freilich, Mara & Galbraith, Eric & Galí, Martí & Henson, Stephanie & Kvale, 2024. "When to add a new process to a model – and when not: A marine biogeochemical perspective," Ecological Modelling, Elsevier, vol. 498(C).
- Dagmar Waltemath & Richard Adams & Daniel A Beard & Frank T Bergmann & Upinder S Bhalla & Randall Britten & Vijayalakshmi Chelliah & Michael T Cooling & Jonathan Cooper & Edmund J Crampin & Alan Garny, 2011. "Minimum Information About a Simulation Experiment (MIASE)," PLOS Computational Biology, Public Library of Science, vol. 7(4), pages 1-4, April.
- Planque, Benjamin & Aarflot, Johanna M. & Buttay, Lucie & Carroll, JoLynn & Fransner, Filippa & Hansen, Cecilie & Husson, Bérengère & Langangen, Øystein & Lindstrøm, Ulf & Pedersen, Torstein & Primice, 2022. "A standard protocol for describing the evaluation of ecological models," Ecological Modelling, Elsevier, vol. 471(C).
- C. Michael Barton & Allen Lee & Marco A. Janssen & Sander van der Leeuw & Gregory E. Tucker & Cheryl Porter & Joshua Greenberg & Laura Swantek & Karin Frank & Min Chen & H. R. Albert Jagers, 2022. "Opinion: How to make models more useful," Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, vol. 119(35), pages 2202112119-, September.
- Grimm, Volker & Augusiak, Jacqueline & Focks, Andreas & Frank, Béatrice M. & Gabsi, Faten & Johnston, Alice S.A. & Liu, Chun & Martin, Benjamin T. & Meli, Mattia & Radchuk, Viktoriia & Thorbek, Pernil, 2014. "Towards better modelling and decision support: Documenting model development, testing, and analysis using TRACE," Ecological Modelling, Elsevier, vol. 280(C), pages 129-139.
- Lemmen, Carsten & Sommer, Philipp Sebastian, 2024. "Good modelling software practices," Ecological Modelling, Elsevier, vol. 498(C).
- C. Michael Barton & Allen Lee & Marco A. Janssen & Sander van der Leeuw & Gregory E. Tucker & Cheryl Porter & Joshua Greenberg & Laura Swantek & Karin Frank & Min Chen & H. R. Albert Jagers, 2022. "Opinion: How to make models more useful," Decision Analysis, INFORMS, vol. 119(35), pages 2202112119-, September.
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Keywords
Workflows; Modelling; Model perpetuation; Reuse of models; Standardization; Stressors;All these keywords.
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