Beyond guides, protocols and acronyms: Adoption of good modelling practices depends on challenging academia's status quo in ecology
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DOI: 10.1016/j.ecolmodel.2024.110829
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- C. Michael Barton & Allen Lee & Marco A. Janssen & Sander van der Leeuw & Gregory E. Tucker & Cheryl Porter & Joshua Greenberg & Laura Swantek & Karin Frank & Min Chen & H. R. Albert Jagers, 2022. "Opinion: How to make models more useful," Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, vol. 119(35), pages 2202112119-, September.
- Ahmed Laatabi & Nicolas Marilleau & Tri Nguyen-Huu & Hassan Hbid & Mohamed Ait Babram, 2018. "ODD+2D: An ODD Based Protocol for Mapping Data to Empirical ABMs," Journal of Artificial Societies and Social Simulation, Journal of Artificial Societies and Social Simulation, vol. 21(2), pages 1-9.
- Malika Ihle & Isabel S. Winney & Anna Krystalli & Michael Croucher, 2017. "Striving for transparent and credible research: practical guidelines for behavioral ecologists," Behavioral Ecology, International Society for Behavioral Ecology, vol. 28(2), pages 348-354.
- Grimm, Volker & Augusiak, Jacqueline & Focks, Andreas & Frank, Béatrice M. & Gabsi, Faten & Johnston, Alice S.A. & Liu, Chun & Martin, Benjamin T. & Meli, Mattia & Radchuk, Viktoriia & Thorbek, Pernil, 2014. "Towards better modelling and decision support: Documenting model development, testing, and analysis using TRACE," Ecological Modelling, Elsevier, vol. 280(C), pages 129-139.
- Volker Grimm & Steven F. Railsback & Christian E. Vincenot & Uta Berger & Cara Gallagher & Donald L. DeAngelis & Bruce Edmonds & Jiaqi Ge & Jarl Giske & Jürgen Groeneveld & Alice S.A. Johnston & Alex, 2020. "The ODD Protocol for Describing Agent-Based and Other Simulation Models: A Second Update to Improve Clarity, Replication, and Structural Realism," Journal of Artificial Societies and Social Simulation, Journal of Artificial Societies and Social Simulation, vol. 23(2), pages 1-7.
- Shelley Stall & Lynn Yarmey & Joel Cutcher-Gershenfeld & Brooks Hanson & Kerstin Lehnert & Brian Nosek & Mark Parsons & Erin Robinson & Lesley Wyborn, 2019. "Make scientific data FAIR," Nature, Nature, vol. 570(7759), pages 27-29, June.
- Regina Nuzzo, 2015. "How scientists fool themselves – and how they can stop," Nature, Nature, vol. 526(7572), pages 182-185, October.
- Troost, Christian & Huber, Robert & Bell, Andrew R. & van Delden, Hedwig & Filatova, Tatiana & Le, Quang Bao & Lippe, Melvin & Niamir, Leila & Polhill, J. Gareth & Sun, Zhanli & Berger, Thomas, 2023. "How to keep it adequate: A protocol for ensuring validity in agent-based simulation," EconStor Open Access Articles and Book Chapters, ZBW - Leibniz Information Centre for Economics, vol. 159, pages 1-21.
- Julian Nowogrodzki, 2019. "How to support open-source software and stay sane," Nature, Nature, vol. 571(7763), pages 133-134, July.
- Thiele, Jan C, 2014. "R Marries NetLogo: Introduction to the RNetLogo Package," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 58(i02).
- Christopher Allen & David M A Mehler, 2019. "Open science challenges, benefits and tips in early career and beyond," PLOS Biology, Public Library of Science, vol. 17(5), pages 1-14, May.
- Planque, Benjamin & Aarflot, Johanna M. & Buttay, Lucie & Carroll, JoLynn & Fransner, Filippa & Hansen, Cecilie & Husson, Bérengère & Langangen, Øystein & Lindstrøm, Ulf & Pedersen, Torstein & Primice, 2022. "A standard protocol for describing the evaluation of ecological models," Ecological Modelling, Elsevier, vol. 471(C).
- Tony Ross-Hellauer, 2022. "Open science, done wrong, will compound inequities," Nature, Nature, vol. 603(7901), pages 363-363, March.
- Grimm, Volker & Berger, Uta & DeAngelis, Donald L. & Polhill, J. Gary & Giske, Jarl & Railsback, Steven F., 2010. "The ODD protocol: A review and first update," Ecological Modelling, Elsevier, vol. 221(23), pages 2760-2768.
- Monya Baker, 2016. "1,500 scientists lift the lid on reproducibility," Nature, Nature, vol. 533(7604), pages 452-454, May.
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Keywords
Ecological modelling; Scientific reliability; Reproducibility; FAIR principles; PERFICT; Academic reform;All these keywords.
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