IDEAS home Printed from https://ideas.repec.org/a/eee/ecomod/v320y2016icp372-382.html
   My bibliography  Save this article

Using one vs. many, sensitivity and uncertainty analyses of species distribution models with focus on conservation area networks

Author

Listed:
  • Ochoa-Ochoa, Leticia M.
  • Flores-Villela, Oscar A.
  • Bezaury-Creel, Juan E.

Abstract

Species Distribution Models (SDM) are currently common currency as proxies of species distribution range, and using consensus among different algorithms is becoming the latest tendency. This information is frequently used to estimate conservation status or for conservation planning. Nonetheless, different algorithms have huge variation in the outcomes. Usually experts determine whether or not a model is accurate, often followed by a trimming process. However, this accuracy estimation cannot be reproduced. Using Mexican endemic amphibians we evaluate the performance of nine modelling algorithms (Artificial Neural Networks, Classification Tree Analysis, Flexible Discriminant Analysis, Generalised Boosting Model, Generalised Linear Models, Multiple Adaptive Regression Splines, MaxEnt, RandomForest, Surface Range Envelope), their strict geographic consensus, locality records and simple convex-hull areas through comparison of: (1) their presence/absence within Mexico's governmental protected areas, (2) range sizes projected, and (3) differences in estimated richness by all methods. We conducted all good practices prior modelling but removed the trimming factor after modelling to make the process repeatable. Presence–absence threshold was determined through the use of the receiver-operating characteristic (ROC). Presence within conservation network of strict consensus and locality records was similar which indicates an over-fitting of the former, the rest of the algorithms performed similarly, with exception of Surface Range Envelope. Richness patterns varied greatly among algorithms. Distribution borders were the areas with higher sensitivity. MaxEnt obtained the highest performance in omission but consensus performed best in correctly predicting species ranges. Closer interaction between curators and modelers would increase SDMs accuracy, which would improve conservation planning effectiveness.

Suggested Citation

  • Ochoa-Ochoa, Leticia M. & Flores-Villela, Oscar A. & Bezaury-Creel, Juan E., 2016. "Using one vs. many, sensitivity and uncertainty analyses of species distribution models with focus on conservation area networks," Ecological Modelling, Elsevier, vol. 320(C), pages 372-382.
  • Handle: RePEc:eee:ecomod:v:320:y:2016:i:c:p:372-382
    DOI: 10.1016/j.ecolmodel.2015.10.031
    as

    Download full text from publisher

    File URL: http://www.sciencedirect.com/science/article/pii/S0304380015005165
    Download Restriction: Full text for ScienceDirect subscribers only

    File URL: https://libkey.io/10.1016/j.ecolmodel.2015.10.031?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. ,, 1999. "Problems And Solutions," Econometric Theory, Cambridge University Press, vol. 15(5), pages 777-788, October.
    2. ,, 1999. "Problems And Solutions," Econometric Theory, Cambridge University Press, vol. 15(1), pages 151-160, February.
    3. Ross A. Alford & Kay S. Bradfield & Stephen J. Richards, 2007. "Global warming and amphibian losses," Nature, Nature, vol. 447(7144), pages 3-4, May.
    4. Richard G. Pearson & Jessica C. Stanton & Kevin T. Shoemaker & Matthew E. Aiello-Lammens & Peter J. Ersts & Ned Horning & Damien A. Fordham & Christopher J. Raxworthy & Hae Yeong Ryu & Jason McNees & , 2014. "Life history and spatial traits predict extinction risk due to climate change," Nature Climate Change, Nature, vol. 4(3), pages 217-221, March.
    5. ,, 1999. "Problems And Solutions," Econometric Theory, Cambridge University Press, vol. 15(4), pages 629-637, August.
    6. Ana S. L. Rodrigues & Sandy J. Andelman & Mohamed I. Bakarr & Luigi Boitani & Thomas M. Brooks & Richard M. Cowling & Lincoln D. C. Fishpool & Gustavo A. B. da Fonseca & Kevin J. Gaston & Michael Hoff, 2004. "Effectiveness of the global protected area network in representing species diversity," Nature, Nature, vol. 428(6983), pages 640-643, April.
    7. Christopher J. Raxworthy & Enrique Martinez-Meyer & Ned Horning & Ronald A. Nussbaum & Gregory E. Schneider & Miguel A. Ortega-Huerta & A. Townsend Peterson, 2003. "Predicting distributions of known and unknown reptile species in Madagascar," Nature, Nature, vol. 426(6968), pages 837-841, December.
    8. C. R. Margules & R. L. Pressey, 2000. "Systematic conservation planning," Nature, Nature, vol. 405(6783), pages 243-253, May.
    9. Barve, Narayani & Barve, Vijay & Jiménez-Valverde, Alberto & Lira-Noriega, Andrés & Maher, Sean P. & Peterson, A. Townsend & Soberón, Jorge & Villalobos, Fabricio, 2011. "The crucial role of the accessible area in ecological niche modeling and species distribution modeling," Ecological Modelling, Elsevier, vol. 222(11), pages 1810-1819.
    10. ,, 1999. "Problems And Solutions," Econometric Theory, Cambridge University Press, vol. 15(3), pages 427-432, June.
    11. Rodríguez-Rey, Marta & Jiménez-Valverde, Alberto & Acevedo, Pelayo, 2013. "Species distribution models predict range expansion better than chance but not better than a simple dispersal model," Ecological Modelling, Elsevier, vol. 256(C), pages 1-5.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. An T. N. Dang & Lalit Kumar & Michael Reid, 2020. "Modelling the Potential Impacts of Climate Change on Rice Cultivation in Mekong Delta, Vietnam," Sustainability, MDPI, vol. 12(22), pages 1-21, November.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Carlos Yañez-Arenas & A Townsend Peterson & Pierre Mokondoko & Octavio Rojas-Soto & Enrique Martínez-Meyer, 2014. "The Use of Ecological Niche Modeling to Infer Potential Risk Areas of Snakebite in the Mexican State of Veracruz," PLOS ONE, Public Library of Science, vol. 9(6), pages 1-9, June.
    2. Silva, Daniel P. & Gonzalez, Victor H. & Melo, Gabriel A.R. & Lucia, Mariano & Alvarez, Leopoldo J. & De Marco, Paulo, 2014. "Seeking the flowers for the bees: Integrating biotic interactions into niche models to assess the distribution of the exotic bee species Lithurgus huberi in South America," Ecological Modelling, Elsevier, vol. 273(C), pages 200-209.
    3. Saupe, E.E. & Barve, V. & Myers, C.E. & Soberón, J. & Barve, N. & Hensz, C.M. & Peterson, A.T. & Owens, H.L. & Lira-Noriega, A., 2012. "Variation in niche and distribution model performance: The need for a priori assessment of key causal factors," Ecological Modelling, Elsevier, vol. 237, pages 11-22.
    4. Fois, Mauro & Cuena-Lombraña, Alba & Fenu, Giuseppe & Bacchetta, Gianluigi, 2018. "Using species distribution models at local scale to guide the search of poorly known species: Review, methodological issues and future directions," Ecological Modelling, Elsevier, vol. 385(C), pages 124-132.
    5. Owens, Hannah L. & Campbell, Lindsay P. & Dornak, L. Lynnette & Saupe, Erin E. & Barve, Narayani & Soberón, Jorge & Ingenloff, Kate & Lira-Noriega, Andrés & Hensz, Christopher M. & Myers, Corinne E. &, 2013. "Constraints on interpretation of ecological niche models by limited environmental ranges on calibration areas," Ecological Modelling, Elsevier, vol. 263(C), pages 10-18.
    6. Giovanelli, João G.R. & de Siqueira, Marinez Ferreira & Haddad, Célio F.B. & Alexandrino, João, 2010. "Modeling a spatially restricted distribution in the Neotropics: How the size of calibration area affects the performance of five presence-only methods," Ecological Modelling, Elsevier, vol. 221(2), pages 215-224.
    7. Krzysztof S. Targiel & Maciej Nowak & Tadeusz Trzaskalik, 2018. "Scheduling non-critical activities using multicriteria approach," Central European Journal of Operations Research, Springer;Slovak Society for Operations Research;Hungarian Operational Research Society;Czech Society for Operations Research;Österr. Gesellschaft für Operations Research (ÖGOR);Slovenian Society Informatika - Section for Operational Research;Croatian Operational Research Society, vol. 26(3), pages 585-598, September.
    8. F. Castro-Llanos & G. Hyman & J. Rubiano & J. Ramirez-Villegas & H. Achicanoy, 2019. "Climate change favors rice production at higher elevations in Colombia," Mitigation and Adaptation Strategies for Global Change, Springer, vol. 24(8), pages 1401-1430, December.
    9. Okitonyumbe Y.F., Joseph & Ulungu, Berthold E.-L., 2013. "Nouvelle caractérisation des solutions efficaces des problèmes d’optimisation combinatoire multi-objectif [New characterization of efficient solution in multi-objective combinatorial optimization]," MPRA Paper 66123, University Library of Munich, Germany.
    10. Amit Kumar & Anila Gupta, 2013. "Mehar’s methods for fuzzy assignment problems with restrictions," Fuzzy Information and Engineering, Springer, vol. 5(1), pages 27-44, March.
    11. Monica Motta & Caterina Sartori, 2020. "Normality and Nondegeneracy of the Maximum Principle in Optimal Impulsive Control Under State Constraints," Journal of Optimization Theory and Applications, Springer, vol. 185(1), pages 44-71, April.
    12. Zhang, Quanzhong & Wei, Haiyan & Liu, Jing & Zhao, Zefang & Ran, Qiao & Gu, Wei, 2021. "A Bayesian network with fuzzy mathematics for species habitat suitability analysis: A case with limited Angelica sinensis (Oliv.) Diels data," Ecological Modelling, Elsevier, vol. 450(C).
    13. Chenchen Wu & Dachuan Xu & Donglei Du & Wenqing Xu, 2016. "An approximation algorithm for the balanced Max-3-Uncut problem using complex semidefinite programming rounding," Journal of Combinatorial Optimization, Springer, vol. 32(4), pages 1017-1035, November.
    14. Gengping Zhu & Matthew J Petersen & Wenjun Bu, 2012. "Selecting Biological Meaningful Environmental Dimensions of Low Discrepancy among Ranges to Predict Potential Distribution of Bean Plataspid Invasion," PLOS ONE, Public Library of Science, vol. 7(9), pages 1-9, September.
    15. Uzma Ashraf & Hassan Ali & Muhammad Nawaz Chaudry & Irfan Ashraf & Adila Batool & Zafeer Saqib, 2016. "Predicting the Potential Distribution of Olea ferruginea in Pakistan incorporating Climate Change by Using Maxent Model," Sustainability, MDPI, vol. 8(8), pages 1-11, July.
    16. Ernst Althaus & Felix Rauterberg & Sarah Ziegler, 2020. "Computing Euclidean Steiner trees over segments," EURO Journal on Computational Optimization, Springer;EURO - The Association of European Operational Research Societies, vol. 8(3), pages 309-325, October.
    17. World Bank, 2003. "Argentina : Reforming Policies and Institutions for Efficiency and Equity of Public Expenditures," World Bank Publications - Reports 14637, The World Bank Group.
    18. Ceretani, Andrea N. & Salva, Natalia N. & Tarzia, Domingo A., 2018. "Approximation of the modified error function," Applied Mathematics and Computation, Elsevier, vol. 337(C), pages 607-617.
    19. Parihar, Amit Kumar Singh & Hammer, Thomas & Sridhar, G., 2015. "Development and testing of tube type wet ESP for the removal of particulate matter and tar from producer gas," Renewable Energy, Elsevier, vol. 74(C), pages 875-883.
    20. Liang, Wanwan & Papeş, Monica & Tran, Liem & Grant, Jerome & Washington-Allen, Robert & Stewart, Scott & Wiggins, Gregory, 2018. "The effect of pseudo-absence selection method on transferability of species distribution models in the context of non-adaptive niche shift," Ecological Modelling, Elsevier, vol. 388(C), pages 1-9.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:eee:ecomod:v:320:y:2016:i:c:p:372-382. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Catherine Liu (email available below). General contact details of provider: http://www.journals.elsevier.com/ecological-modelling .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.