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Uncertainty propagation in vegetation distribution models based on ensemble classifiers

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  • Peters, Jan
  • Verhoest, Niko E.C.
  • Samson, Roeland
  • Van Meirvenne, Marc
  • Cockx, Liesbet
  • De Baets, Bernard

Abstract

Ensemble learning techniques are increasingly applied for species and vegetation distribution modelling, often resulting in more accurate predictions. At the same time, uncertainty assessment of distribution models is gaining attention. In this study, Random Forests, an ensemble learning technique, is selected for vegetation distribution modelling based on environmental variables. The impact of two important sources of uncertainty, that is the uncertainty on spatial interpolation of environmental variables and the uncertainty on species clustering into vegetation types, is quantified based on sequential Gaussian simulation and pseudo-randomization tests, respectively. An empirical assessment of the uncertainty propagation to the distribution modelling results indicated a gradual decrease in performance with increasing input uncertainty. The test set error ranged from 30.83% to 52.63% and from 30.83% to 83.62%, when the uncertainty ranges on spatial interpolation and on vegetation clustering, respectively, were fully covered. Shannon’s entropy, which is proposed as a measure for uncertainty of ensemble predictions, revealed a similar increasing trend in prediction uncertainty. The implications of these results in an empirical distribution modelling framework are further discussed with respect to monitoring setup, spatial interpolation and species clustering.

Suggested Citation

  • Peters, Jan & Verhoest, Niko E.C. & Samson, Roeland & Van Meirvenne, Marc & Cockx, Liesbet & De Baets, Bernard, 2009. "Uncertainty propagation in vegetation distribution models based on ensemble classifiers," Ecological Modelling, Elsevier, vol. 220(6), pages 791-804.
  • Handle: RePEc:eee:ecomod:v:220:y:2009:i:6:p:791-804
    DOI: 10.1016/j.ecolmodel.2008.12.022
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    References listed on IDEAS

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    2. Miller, Jennifer & Franklin, Janet & Aspinall, Richard, 2007. "Incorporating spatial dependence in predictive vegetation models," Ecological Modelling, Elsevier, vol. 202(3), pages 225-242.
    3. Peters, Jan & Baets, Bernard De & Verhoest, Niko E.C. & Samson, Roeland & Degroeve, Sven & Becker, Piet De & Huybrechts, Willy, 2007. "Random forests as a tool for ecohydrological distribution modelling," Ecological Modelling, Elsevier, vol. 207(2), pages 304-318.
    4. Larssen, Thorjørn & Høgåsen, Tore & Cosby, B. Jack, 2007. "Impact of time series data on calibration and prediction uncertainty for a deterministic hydrogeochemical model," Ecological Modelling, Elsevier, vol. 207(1), pages 22-33.
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    1. Muñoz-Mas, R. & Martínez-Capel, F. & Alcaraz-Hernández, J.D. & Mouton, A.M., 2015. "Can multilayer perceptron ensembles model the ecological niche of freshwater fish species?," Ecological Modelling, Elsevier, vol. 309, pages 72-81.

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