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The large-scale organization of metabolic networks

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  1. Laurie A. Schintler & Aura Reggiani & Rajendra Kulkarni & Peter Nijkamp, 2003. "Scale-Free Phenomena in Communication Networks: A Cross-Atlantic Comparison," ERSA conference papers ersa03p436, European Regional Science Association.
  2. Wen, Xiangxi & Tu, Congliang & Wu, Minggong, 2018. "Node importance evaluation in aviation network based on “No Return” node deletion method," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 503(C), pages 546-559.
  3. Timothy D. Arthur & Jennifer P. Nguyen & Agnieszka D’Antonio-Chronowska & Hiroko Matsui & Nayara S. Silva & Isaac N. Joshua & André D. Luchessi & William W. Young Greenwald & Matteo D’Antonio & Martin, 2024. "Complex regulatory networks influence pluripotent cell state transitions in human iPSCs," Nature Communications, Nature, vol. 15(1), pages 1-19, December.
  4. Zamora, Maria A. & Pinzón, Andres & Zambrano, Maria M. & Restrepo, Silvia & Broadbelt, Linda J. & Moura, Matthew & Husserl Orjuela, Johana & González Barrios, Andrés F., 2015. "A comparison between functional frequency and metabolic flows framed by biogeochemical cycles in metagenomes: The case of “El Coquito” hot spring located at Colombia's national Nevados park," Ecological Modelling, Elsevier, vol. 313(C), pages 259-265.
  5. Leo Egghe, 2009. "Performance and its relation with productivity in Lotkaian systems," Scientometrics, Springer;Akadémiai Kiadó, vol. 81(2), pages 567-585, November.
  6. Lawford, Steve & Mehmeti, Yll, 2020. "Cliques and a new measure of clustering: With application to U.S. domestic airlines," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 560(C).
  7. Gong, Pulin & van Leeuwen, Cees, 2003. "Emergence of scale-free network with chaotic units," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 321(3), pages 679-688.
  8. Monteiro, R.L.S. & Fontoura, J.R.A. & Carneiro, T.K.G. & Moret, M.A. & Pereira, H.B.B., 2014. "Evolution based on chromosome affinity from a network perspective," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 403(C), pages 276-283.
  9. Jin Wang & Bo Huang & Xuefeng Xia & Zhirong Sun, 2006. "Funneled Landscape Leads to Robustness of Cell Networks: Yeast Cell Cycle," PLOS Computational Biology, Public Library of Science, vol. 2(11), pages 1-10, November.
  10. Dan Braha & Yaneer Bar-Yam, 2007. "The Statistical Mechanics of Complex Product Development: Empirical and Analytical Results," Management Science, INFORMS, vol. 53(7), pages 1127-1145, July.
  11. Marr, Carsten & Hütt, Marc-Thorsten, 2005. "Topology regulates pattern formation capacity of binary cellular automata on graphs," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 354(C), pages 641-662.
  12. Ruskin, Heather J. & Burns, John, 2006. "Weighted networks in immune system shape space," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 365(2), pages 549-555.
  13. Yin, Mei & Zhu, Lingjiong, 2016. "Reciprocity in directed networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 447(C), pages 71-84.
  14. Salcedo-Sanz, S. & Cuadra, L., 2019. "Quasi scale-free geographically embedded networks over DLA-generated aggregates," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 523(C), pages 1286-1305.
  15. Gustedt, Jens & Raghavan, Hari K. & Schimit, Pedro, 2011. "Exploring the random genesis of co-occurrence networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 390(9), pages 1516-1528.
  16. Yang, Yang & Sun, Peng Gang & Hu, Xia & Li, Zhou Jun, 2014. "Closed walks for community detection," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 397(C), pages 129-143.
  17. Yao, Xin & Zhang, Chang-shui & Chen, Jin-wen & Li, Yan-da, 2005. "On the formation of degree and cluster-degree correlations in scale-free networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 353(C), pages 661-673.
  18. Daniel Straulino & Mattie Landman & Neave O'Clery, 2020. "A bi-directional approach to comparing the modular structure of networks," Papers 2010.06568, arXiv.org.
  19. Zhou, Wei-Xing & Jiang, Zhi-Qiang & Sornette, Didier, 2007. "Exploring self-similarity of complex cellular networks: The edge-covering method with simulated annealing and log-periodic sampling," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 375(2), pages 741-752.
  20. Caccioli, Fabio & Farmer, J. Doyne & Foti, Nick & Rockmore, Daniel, 2015. "Overlapping portfolios, contagion, and financial stability," Journal of Economic Dynamics and Control, Elsevier, vol. 51(C), pages 50-63.
  21. Alexander Erath & Michael Löchl & Kay Axhausen, 2009. "Graph-Theoretical Analysis of the Swiss Road and Railway Networks Over Time," Networks and Spatial Economics, Springer, vol. 9(3), pages 379-400, September.
  22. Mao, Liang & Yang, Yan, 2012. "Coupling infectious diseases, human preventive behavior, and networks – A conceptual framework for epidemic modeling," Social Science & Medicine, Elsevier, vol. 74(2), pages 167-175.
  23. Boginski, Vladimir & Butenko, Sergiy & Pardalos, Panos M., 2005. "Statistical analysis of financial networks," Computational Statistics & Data Analysis, Elsevier, vol. 48(2), pages 431-443, February.
  24. Zhang, Xuejun & Pang, Wenbo & Xia, Yongxiang, 2018. "An intermediary probability model for link prediction," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 512(C), pages 902-912.
  25. Wang, Huan & Xu, Chuan-Yun & Hu, Jing-Bo & Cao, Ke-Fei, 2014. "A complex network analysis of hypertension-related genes," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 394(C), pages 166-176.
  26. Matteo Mori & Chuankai Cheng & Brian R. Taylor & Hiroyuki Okano & Terence Hwa, 2023. "Functional decomposition of metabolism allows a system-level quantification of fluxes and protein allocation towards specific metabolic functions," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
  27. Henry Dorrian & Jon Borresen & Martyn Amos, 2013. "Community Structure and Multi-Modal Oscillations in Complex Networks," PLOS ONE, Public Library of Science, vol. 8(10), pages 1-10, October.
  28. Sergey Vakulenko & Dmitry Grigoriev, 2021. "Deep Gene Networks and Response to Stress," Mathematics, MDPI, vol. 9(23), pages 1-19, November.
  29. Oates Chris J. & Spencer Simon E.F. & Amos Richard, 2014. "Quantifying the multi-scale performance of network inference algorithms," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 13(5), pages 1-21, October.
  30. Heath Henderson & Arnob Alam, 2022. "The structure of risk-sharing networks," Empirical Economics, Springer, vol. 62(2), pages 853-886, February.
  31. Pablo Medina & Natalia Ariza & Pablo Navas & Fernando Rojas & Gina Parody & Juan Alejandro Valdivia & Roberto Zarama & Juan Felipe Penagos, 2018. "An Unintended Effect of Financing the University Education of the Most Brilliant and Poorest Colombian Students: The Case of the Intervention of the Ser Pilo Paga Program," Complexity, Hindawi, vol. 2018, pages 1-9, December.
  32. Aslam, Faheem & Aziz, Saqib & Nguyen, Duc Khuong & Mughal, Khurrum S. & Khan, Maaz, 2020. "On the efficiency of foreign exchange markets in times of the COVID-19 pandemic," Technological Forecasting and Social Change, Elsevier, vol. 161(C).
  33. Jorge Peña & Yannick Rochat, 2012. "Bipartite Graphs as Models of Population Structures in Evolutionary Multiplayer Games," PLOS ONE, Public Library of Science, vol. 7(9), pages 1-13, September.
  34. Selen Onel & Abe Zeid & Sagar Kamarthi, 2011. "The structure and analysis of nanotechnology co-author and citation networks," Scientometrics, Springer;Akadémiai Kiadó, vol. 89(1), pages 119-138, October.
  35. Anton Kocheturov & Panos M. Pardalos & Athanasia Karakitsiou, 2019. "Massive datasets and machine learning for computational biomedicine: trends and challenges," Annals of Operations Research, Springer, vol. 276(1), pages 5-34, May.
  36. Chen, Jin & Le, Anbo & Wang, Qin & Xi, Lifeng, 2016. "A small-world and scale-free network generated by Sierpinski Pentagon," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 449(C), pages 126-135.
  37. Frank Emmert-Streib, 2013. "Structural Properties and Complexity of a New Network Class: Collatz Step Graphs," PLOS ONE, Public Library of Science, vol. 8(2), pages 1-14, February.
  38. Yang, J.-H. Steffi, 2009. "Social network influence and market instability," Journal of Mathematical Economics, Elsevier, vol. 45(3-4), pages 257-276, March.
  39. Ramon Ferrer i Cancho & Ricard V. Solé, 2001. "The Small-World of Human Language," Working Papers 01-03-016, Santa Fe Institute.
  40. Mirja Meyer & Marc-Thorsten Hütt & Julia Bendul, 2016. "The elementary flux modes of a manufacturing system: a novel approach to explore the relationship of network structure and function," International Journal of Production Research, Taylor & Francis Journals, vol. 54(14), pages 4145-4160, July.
  41. Kazemilari, Mansooreh & Mardani, Abbas & Streimikiene, Dalia & Zavadskas, Edmundas Kazimieras, 2017. "An overview of renewable energy companies in stock exchange: Evidence from minimal spanning tree approach," Renewable Energy, Elsevier, vol. 102(PA), pages 107-117.
  42. Fei Tan & Yongxiang Xia & Boyao Zhu, 2014. "Link Prediction in Complex Networks: A Mutual Information Perspective," PLOS ONE, Public Library of Science, vol. 9(9), pages 1-8, September.
  43. Sgrignoli, P. & Agliari, E. & Burioni, R. & Schianchi, A., 2015. "Instability and network effects in innovative markets," Mathematics and Computers in Simulation (MATCOM), Elsevier, vol. 108(C), pages 260-271.
  44. P.B., Divya & Lekha, Divya Sindhu & Johnson, T.P. & Balakrishnan, Kannan, 2022. "Vulnerability of link-weighted complex networks in central attacks and fallback strategy," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 590(C).
  45. Long Ma & Xiao Han & Zhesi Shen & Wen-Xu Wang & Zengru Di, 2015. "Efficient Reconstruction of Heterogeneous Networks from Time Series via Compressed Sensing," PLOS ONE, Public Library of Science, vol. 10(11), pages 1-12, November.
  46. Bellingeri, M. & Bevacqua, D. & Scotognella, F. & LU, Zhe-Ming & Cassi, D., 2018. "Efficacy of local attack strategies on the Beijing road complex weighted network," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 510(C), pages 316-328.
  47. Vidmer, Alexandre & Zeng, An & Medo, Matúš & Zhang, Yi-Cheng, 2015. "Prediction in complex systems: The case of the international trade network," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 436(C), pages 188-199.
  48. Alvarez-Yela, Astrid Catalina & Alvarez-Silva, María Camila & Restrepo, Silvia & Husserl, Johana & Zambrano, María Mercedes & Danies, Giovanna & Gómez, Jorge M. & González Barrios, Andrés Fernando, 2017. "Influence of agricultural activities in the structure and metabolic functionality of paramo soil samples in Colombia studied using a metagenomics analysis in dynamic state," Ecological Modelling, Elsevier, vol. 351(C), pages 63-76.
  49. Emmert-Streib, Frank & Dehmer, Matthias, 2009. "Fault tolerance of information processing in gene networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 388(4), pages 541-548.
  50. Chen, Qinghua & Shi, Dinghua, 2006. "Markov chains theory for scale-free networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 360(1), pages 121-133.
  51. Fabio Caccioli & J. Doyne Farmer & Nick Foti & Daniel Rockmore, 2013. "How interbank lending amplifies overlapping portfolio contagion: A case study of the Austrian banking network," Papers 1306.3704, arXiv.org.
  52. Cemal Cagatay Bilgin & Shayoni Ray & Banu Baydil & William P Daley & Melinda Larsen & Bülent Yener, 2012. "Multiscale Feature Analysis of Salivary Gland Branching Morphogenesis," PLOS ONE, Public Library of Science, vol. 7(3), pages 1-19, March.
  53. Dan Braha & Yaneer Bar-Yam, 2004. "Information Flow Structure in Large-Scale Product Development Organizational Networks," Industrial Organization 0407012, University Library of Munich, Germany.
  54. Hütt, M.-Th. & Lüttge, U., 2005. "The interplay of synchronization and fluctuations reveals connectivity levels in networks of nonlinear oscillators," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 350(2), pages 207-226.
  55. Zhou, Jin & Lu, Jun-an, 2007. "Topology identification of weighted complex dynamical networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 386(1), pages 481-491.
  56. Xue-Yan Zhang & Tian-Yuan He & Chuan-Yun Xu & Ke-Fei Cao & Xu-Sheng Zhang, 2023. "Theoretical investigation of the pathway-based network of type 2 diabetes mellitus-related genes," The European Physical Journal B: Condensed Matter and Complex Systems, Springer;EDP Sciences, vol. 96(6), pages 1-13, June.
  57. Christian F A Negre & Hayato Ushijima-Mwesigwa & Susan M Mniszewski, 2020. "Detecting multiple communities using quantum annealing on the D-Wave system," PLOS ONE, Public Library of Science, vol. 15(2), pages 1-14, February.
  58. Wang, Junjie & Zhou, Shuigeng & Guan, Jihong, 2011. "Characteristics of real futures trading networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 390(2), pages 398-409.
  59. Chung-Yen Yu & Yung-Ting Chuang & Hsi-Peng Kuan, 2017. "Understanding Faculty Collaboration and Productivity: A Case Study," Asian Social Science, Canadian Center of Science and Education, vol. 13(3), pages 1-1, March.
  60. Wu, Jianshe & Jiao, Licheng, 2007. "Synchronization in complex delayed dynamical networks with nonsymmetric coupling," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 386(1), pages 513-530.
  61. S Konini & E J Janse van Rensburg, 2017. "Mean field analysis of algorithms for scale-free networks in molecular biology," PLOS ONE, Public Library of Science, vol. 12(12), pages 1-34, December.
  62. Aming Li & Yang-Yu Liu, 2020. "Controlling Network Dynamics," Advances in Complex Systems (ACS), World Scientific Publishing Co. Pte. Ltd., vol. 22(07n08), pages 1-19, February.
  63. Bang, Youngsok & Lee, Dong-Joo & Bae, Yoon-Soo & Ahn, Jae-Hyeon, 2012. "Improving information security management: An analysis of ID–password usage and a new login vulnerability measure," International Journal of Information Management, Elsevier, vol. 32(5), pages 409-418.
  64. Gaoyang Li & Li Liu & Wei Du & Huansheng Cao, 2023. "Local flux coordination and global gene expression regulation in metabolic modeling," Nature Communications, Nature, vol. 14(1), pages 1-18, December.
  65. Rendón de la Torre, Stephanie & Kalda, Jaan & Kitt, Robert & Engelbrecht, Jüri, 2016. "On the topologic structure of economic complex networks: Empirical evidence from large scale payment network of Estonia," Chaos, Solitons & Fractals, Elsevier, vol. 90(C), pages 18-27.
  66. Gamannossi degl’Innocenti, Duccio & Rablen, Matthew D., 2020. "Tax evasion on a social network," Journal of Economic Behavior & Organization, Elsevier, vol. 169(C), pages 79-91.
  67. LaRocca, Sarah & Guikema, Seth D., 2015. "Characterizing and predicting the robustness of power-law networks," Reliability Engineering and System Safety, Elsevier, vol. 133(C), pages 157-166.
  68. Andrea De Martino & Daniele De Martino & Roberto Mulet & Andrea Pagnani, 2014. "Identifying All Moiety Conservation Laws in Genome-Scale Metabolic Networks," PLOS ONE, Public Library of Science, vol. 9(7), pages 1-11, July.
  69. Tachimori, Yutaka & Iwanaga, Hiroaki & Tahara, Takashi, 2013. "The networks from medical knowledge and clinical practice have small-world, scale-free, and hierarchical features," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 392(23), pages 6084-6089.
  70. Soramäki, Kimmo & Bech, Morten L. & Arnold, Jeffrey & Glass, Robert J. & Beyeler, Walter E., 2007. "The topology of interbank payment flows," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 379(1), pages 317-333.
  71. Giuliano Andrea Pagani & Marco Aiello, 2015. "A complex network approach for identifying vulnerabilities of the medium and low voltage grid," International Journal of Critical Infrastructures, Inderscience Enterprises Ltd, vol. 11(1), pages 36-61.
  72. Xibo Wang & Jianping Ge & Wendong Wei & Hanshi Li & Chen Wu & Ge Zhu, 2016. "Spatial Dynamics of the Communities and the Role of Major Countries in the International Rare Earths Trade: A Complex Network Analysis," PLOS ONE, Public Library of Science, vol. 11(5), pages 1-22, May.
  73. Biggiero, Lucio & Angelini, Pier Paolo, 2015. "Hunting scale-free properties in R&D collaboration networks: Self-organization, power-law and policy issues in the European aerospace research area," Technological Forecasting and Social Change, Elsevier, vol. 94(C), pages 21-43.
  74. Andreas Wagner, 2001. "The Yeast Protein Interaction Network Evolves Rapidly and Contains Few Redundant Duplicate Genes," Working Papers 01-04-022, Santa Fe Institute.
  75. Arshad, Shaista & Rizvi, Syed Aun R. & Ghani, Gairuzazmi Mat & Duasa, Jarita, 2016. "Investigating stock market efficiency: A look at OIC member countries," Research in International Business and Finance, Elsevier, vol. 36(C), pages 402-413.
  76. Raghav, Tanu & Jalan, Sarika, 2022. "Random matrix analysis of multiplex networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 586(C).
  77. Yuji Yamamoto & Keiko Yokoyama, 2011. "Common and Unique Network Dynamics in Football Games," PLOS ONE, Public Library of Science, vol. 6(12), pages 1-6, December.
  78. Ma, Liangliang & Liu, Jing & Duan, Boping, 2016. "Evolution of network robustness under continuous topological changes," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 451(C), pages 623-631.
  79. Mario Maggioni & Teodora Uberti, 2009. "Knowledge networks across Europe: which distance matters?," The Annals of Regional Science, Springer;Western Regional Science Association, vol. 43(3), pages 691-720, September.
  80. Boyu Zhang & Cong Li & Yi Tao, 2016. "Evolutionary Stability and the Evolution of Cooperation on Heterogeneous Graphs," Dynamic Games and Applications, Springer, vol. 6(4), pages 567-579, December.
  81. Bryce Thomas & Raja Jurdak & Kun Zhao & Ian Atkinson, 2016. "Diffusion in Colocation Contact Networks: The Impact of Nodal Spatiotemporal Dynamics," PLOS ONE, Public Library of Science, vol. 11(8), pages 1-21, August.
  82. Pagani, Giuliano Andrea & Aiello, Marco, 2013. "The Power Grid as a complex network: A survey," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 392(11), pages 2688-2700.
  83. Bai, Man-Ying & Zhu, Hai-Bo, 2010. "Power law and multiscaling properties of the Chinese stock market," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 389(9), pages 1883-1890.
  84. Yin, Likang & Zheng, Haoyang & Bian, Tian & Deng, Yong, 2017. "An evidential link prediction method and link predictability based on Shannon entropy," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 482(C), pages 699-712.
  85. Jacob D Feala & Jorge Cortes & Phillip M Duxbury & Andrew D McCulloch & Carlo Piermarocchi & Giovanni Paternostro, 2012. "Statistical Properties and Robustness of Biological Controller-Target Networks," PLOS ONE, Public Library of Science, vol. 7(1), pages 1-11, January.
  86. Tamás Nepusz & Tamás Vicsek, 2013. "Hierarchical Self-Organization of Non-Cooperating Individuals," PLOS ONE, Public Library of Science, vol. 8(12), pages 1-9, December.
  87. N. Foti & S. Pauls & Daniel N. Rockmore, 2011. "Stability of the World Trade Web over Time - An Extinction Analysis," Papers 1104.4380, arXiv.org, revised May 2011.
  88. Semi Min & Juyong Park, 2019. "Modeling narrative structure and dynamics with networks, sentiment analysis, and topic modeling," PLOS ONE, Public Library of Science, vol. 14(12), pages 1-20, December.
  89. Michelangelo Ceci & Gianvito Pio & Vladimir Kuzmanovski & Sašo Džeroski, 2015. "Semi-Supervised Multi-View Learning for Gene Network Reconstruction," PLOS ONE, Public Library of Science, vol. 10(12), pages 1-27, December.
  90. Raghvendra Mall & Rocco Langone & Johan A K Suykens, 2015. "Netgram: Visualizing Communities in Evolving Networks," PLOS ONE, Public Library of Science, vol. 10(9), pages 1-24, September.
  91. Saucan, Emil & Sreejith, R.P. & Vivek-Ananth, R.P. & Jost, Jürgen & Samal, Areejit, 2019. "Discrete Ricci curvatures for directed networks," Chaos, Solitons & Fractals, Elsevier, vol. 118(C), pages 347-360.
  92. Wang, Xingyuan & Qin, Xiaomeng, 2016. "Asymmetric intimacy and algorithm for detecting communities in bipartite networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 462(C), pages 569-578.
  93. Zhu, Hailin & Luo, Hong & Peng, Haipeng & Li, Lixiang & Luo, Qun, 2009. "Complex networks-based energy-efficient evolution model for wireless sensor networks," Chaos, Solitons & Fractals, Elsevier, vol. 41(4), pages 1828-1835.
  94. Itzhack, Royi & Muchnik, Lev & Erez, Tom & Tsaban, Lea & Goldenberg, Jacob & Solomon, Sorin & Louzoun, Yoram, 2010. "Empirical extraction of mechanisms underlying real world network generation," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 389(22), pages 5308-5318.
  95. Zenil, Hector & Soler-Toscano, Fernando & Dingle, Kamaludin & Louis, Ard A., 2014. "Correlation of automorphism group size and topological properties with program-size complexity evaluations of graphs and complex networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 404(C), pages 341-358.
  96. Livi, Lorenzo & Maiorino, Enrico & Pinna, Andrea & Sadeghian, Alireza & Rizzi, Antonello & Giuliani, Alessandro, 2016. "Analysis of heat kernel highlights the strongly modular and heat-preserving structure of proteins," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 441(C), pages 199-214.
  97. Keun-Young Kim & Jin Wang, 2007. "Potential Energy Landscape and Robustness of a Gene Regulatory Network: Toggle Switch," PLOS Computational Biology, Public Library of Science, vol. 3(3), pages 1-13, March.
  98. Jiang, Jingchi & Zheng, Jichuan & Zhao, Chao & Su, Jia & Guan, Yi & Yu, Qiubin, 2016. "Clinical-decision support based on medical literature: A complex network approach," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 459(C), pages 42-54.
  99. Qiao, Jian & Meng, Ying-Ying & Chen, Hsinchun & Huang, Hong-Qiao & Li, Guo-Ying, 2016. "Modeling one-mode projection of bipartite networks by tagging vertex information," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 457(C), pages 270-279.
  100. Andreas Wagner, 2001. "Estimating Coarse Gene Network Structure from Large-Scale Gene Perturbation Data," Working Papers 01-09-051, Santa Fe Institute.
  101. Sakiyama, Tomoko, 2021. "A power law network in an evolutionary hawk–dove game," Chaos, Solitons & Fractals, Elsevier, vol. 146(C).
  102. Gao, Yuyang & Liang, Wei & Shi, Yuming & Huang, Qiuling, 2014. "Comparison of directed and weighted co-occurrence networks of six languages," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 393(C), pages 579-589.
  103. Serra, Roberto & Villani, Marco & Agostini, Luca, 2004. "On the dynamics of random Boolean networks with scale-free outgoing connections," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 339(3), pages 665-673.
  104. Markovič, Rene & Gosak, Marko & Marhl, Marko, 2014. "Broad-scale small-world network topology induces optimal synchronization of flexible oscillators," Chaos, Solitons & Fractals, Elsevier, vol. 69(C), pages 14-21.
  105. How to Reconstruct a Large Genetic Network from n Gene Perturbations in Fewer than n2 Easy Steps, 2001. "How to Reconstruct a Large Genetic Network from," Working Papers 01-09-047, Santa Fe Institute.
  106. Cajueiro, Daniel O., 2010. "Optimal navigation for characterizing the role of the nodes in complex networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 389(9), pages 1945-1954.
  107. Takemoto, Kazuhiro & Tamura, Takeyuki & Cong, Yang & Ching, Wai-Ki & Vert, Jean-Philippe & Akutsu, Tatsuya, 2012. "Analysis of the impact degree distribution in metabolic networks using branching process approximation," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 391(1), pages 379-387.
  108. Claes Andersson & Koen Frenken & Alexander Hellervik, 2006. "A Complex Network Approach to Urban Growth," Environment and Planning A, , vol. 38(10), pages 1941-1964, October.
  109. Fu, Jingcheng & Wu, Jianliang & Liu, Chuanjian & Xu, Jin, 2016. "Leaders in communities of real-world networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 444(C), pages 428-441.
  110. Guillaume, Jean-Loup & Latapy, Matthieu, 2006. "Bipartite graphs as models of complex networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 371(2), pages 795-813.
  111. Jianjun Cheng & Xing Su & Haijuan Yang & Longjie Li & Jingming Zhang & Shiyan Zhao & Xiaoyun Chen, 2019. "Neighbor Similarity Based Agglomerative Method for Community Detection in Networks," Complexity, Hindawi, vol. 2019, pages 1-16, May.
  112. Caroline A Johnson & Allison C Reilly & Roger Flage & Seth D Guikema, 2021. "Characterizing the robustness of power-law networks that experience spatially-correlated failures," Journal of Risk and Reliability, , vol. 235(3), pages 403-415, June.
  113. Chungmok Lee & Minh Pham & Myong K. Jeong & Dohyun Kim & Dennis K. J. Lin & Wanpracha Art Chavalitwongse, 2015. "A Network Structural Approach to the Link Prediction Problem," INFORMS Journal on Computing, INFORMS, vol. 27(2), pages 249-267, May.
  114. Georg Jäger & Christian Hofer & Marie Kapeller & Manfred Füllsack, 2017. "Hidden early-warning signals in scale-free networks," PLOS ONE, Public Library of Science, vol. 12(12), pages 1-14, December.
  115. Foti, Nicholas J. & Pauls, Scott & Rockmore, Daniel N., 2013. "Stability of the World Trade Web over time – An extinction analysis," Journal of Economic Dynamics and Control, Elsevier, vol. 37(9), pages 1889-1910.
  116. Emerson, I. Arnold & Gothandam, K.M., 2012. "Network analysis of transmembrane protein structures," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 391(3), pages 905-916.
  117. Tsonis, A.A. & Roebber, P.J., 2004. "The architecture of the climate network," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 333(C), pages 497-504.
  118. Azzam, Islam & El-Masry, Ahmed A. & Yamani, Ehab, 2023. "Foreign exchange market efficiency during COVID-19 pandemic," International Review of Economics & Finance, Elsevier, vol. 86(C), pages 717-730.
  119. Carvunis, Anne-Ruxandra & Latapy, Matthieu & Lesne, Annick & Magnien, Clémence & Pezard, Laurent, 2006. "Dynamics of three-state excitable units on Poisson vs. power-law random networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 367(C), pages 595-612.
  120. Hayato Goto & Hideki Takayasu & Misako Takayasu, 2017. "Estimating risk propagation between interacting firms on inter-firm complex network," PLOS ONE, Public Library of Science, vol. 12(10), pages 1-12, October.
  121. John Platig & Peter J Castaldi & Dawn DeMeo & John Quackenbush, 2016. "Bipartite Community Structure of eQTLs," PLOS Computational Biology, Public Library of Science, vol. 12(9), pages 1-17, September.
  122. J. Esquivel-Gómez & R. E. Balderas-Navarro & P. D. Arjona-Villicaña & P. Castillo-Castillo & O. Rico-Trejo & J. Acosta-Elias, 2017. "On the Emergence of Islands in Complex Networks," Complexity, Hindawi, vol. 2017, pages 1-10, January.
  123. Atieh Mirshahvalad & Olivier H Beauchesne & Éric Archambault & Martin Rosvall, 2013. "Resampling Effects on Significance Analysis of Network Clustering and Ranking," PLOS ONE, Public Library of Science, vol. 8(1), pages 1-7, January.
  124. Türker, İlker, 2018. "Generating clustered scale-free networks using Poisson based localization of edges," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 497(C), pages 72-85.
  125. Polovnikov, Kirill & Kazakov, Vlad & Syntulsky, Sergey, 2020. "Core–periphery organization of the cryptocurrency market inferred by the modularity operator," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 540(C).
  126. Dassisti, M. & Carnimeo, L., 2013. "A small-world methodology of analysis of interchange energy-networks: The European behaviour in the economical crisis," Energy Policy, Elsevier, vol. 63(C), pages 887-899.
  127. Liang, Wei & Shi, Yuming & Tse, Chi K. & Liu, Jing & Wang, Yanli & Cui, Xunqiang, 2009. "Comparison of co-occurrence networks of the Chinese and English languages," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 388(23), pages 4901-4909.
  128. Bono, Flavio & Gutiérrez, Eugenio, 2011. "A network-based analysis of the impact of structural damage on urban accessibility following a disaster: the case of the seismically damaged Port Au Prince and Carrefour urban road networks," Journal of Transport Geography, Elsevier, vol. 19(6), pages 1443-1455.
  129. Tan, Taison & Frenkel, Daan & Gupta, Vishal & Deem, Michael W., 2005. "Length, protein–protein interactions, and complexity," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 350(1), pages 52-62.
  130. Lin Zhang & Jian Lu & Bai-bai Fu & Shu-bin Li, 2018. "A Review and Prospect for the Complexity and Resilience of Urban Public Transit Network Based on Complex Network Theory," Complexity, Hindawi, vol. 2018, pages 1-36, December.
  131. Minh Tran & Thanh Duong & Duc Pham-Hi & Marc Bui, 2020. "Detecting the Proportion of Traders in the Stock Market: An Agent-Based Approach," Mathematics, MDPI, vol. 8(2), pages 1-14, February.
  132. Peng Wu & Li Pan, 2015. "Multi-Objective Community Detection Based on Memetic Algorithm," PLOS ONE, Public Library of Science, vol. 10(5), pages 1-31, May.
  133. He, Tao & Lu, Xiliang & Wu, Xiaoqun & Lu, Jun-an & Zheng, Wei Xing, 2013. "Optimization-based structure identification of dynamical networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 392(4), pages 1038-1049.
  134. Pagani, Giuliano Andrea & Aiello, Marco, 2014. "Power grid complex network evolutions for the smart grid," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 396(C), pages 248-266.
  135. J. Garcia-Algarra & J. M. Pastor & M. L. Mouronte & J. Galeano, 2018. "A Structural Approach to Disentangle the Visualization of Bipartite Biological Networks," Complexity, Hindawi, vol. 2018, pages 1-11, February.
  136. Tsuchiya, Masa & Selvarajoo, Kumar & Piras, Vincent & Tomita, Masaru & Giuliani, Alessandro, 2009. "Local and global responses in complex gene regulation networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 388(8), pages 1738-1746.
  137. Pongou, Roland & Tchuente, Guy & Tondji, Jean-Baptiste, 2021. "Optimally Targeting Interventions in Networks during a Pandemic: Theory and Evidence from the Networks of Nursing Homes in the United States," GLO Discussion Paper Series 957, Global Labor Organization (GLO).
  138. Gianluca D’Addese & Martina Casari & Roberto Serra & Marco Villani, 2021. "A Fast and Effective Method to Identify Relevant Sets of Variables in Complex Systems," Mathematics, MDPI, vol. 9(9), pages 1-27, April.
  139. Lordan, Oriol & Sallan, Jose M. & Simo, Pep, 2014. "Study of the topology and robustness of airline route networks from the complex network approach: a survey and research agenda," Journal of Transport Geography, Elsevier, vol. 37(C), pages 112-120.
  140. Ruiz-Moreno, Héctor Alejandro & López-Tamayo, Ana María & Caro-Quintero, Alejandro & Husserl, Johana & González Barrios, Andrés Fernando, 2019. "Metagenome level metabolic network reconstruction analysis reveals the microbiome in the Bogotá River is functionally close to the microbiome in produced water," Ecological Modelling, Elsevier, vol. 399(C), pages 1-12.
  141. Wang, Huan & Hu, Jing-Bo & Xu, Chuan-Yun & Zhang, De-Hai & Yan, Qian & Xu, Ming & Cao, Ke-Fei & Zhang, Xu-Sheng, 2016. "A pathway-based network analysis of hypertension-related genes," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 444(C), pages 928-939.
  142. Wu, Jianshe & Jiao, Licheng, 2007. "Observer-based synchronization in complex dynamical networks with nonsymmetric coupling," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 386(1), pages 469-480.
  143. Merza, Ádám & London, András & Kiss, István Márton & Pelle, Anita & Dombi, József & Németh, Tamás, 2016. "A világkereskedelem hálózatelméleti vizsgálatának lehetőségeiről [The scope for analysis of world trade through network theory]," Közgazdasági Szemle (Economic Review - monthly of the Hungarian Academy of Sciences), Közgazdasági Szemle Alapítvány (Economic Review Foundation), vol. 0(1), pages 79-98.
  144. Liu, Panfeng & Li, Longjie & Fang, Shiyu & Yao, Yukai, 2021. "Identifying influential nodes in social networks: A voting approach," Chaos, Solitons & Fractals, Elsevier, vol. 152(C).
  145. Yeşim Güney & Yetkin Tuaç & Olcay Arslan, 2017. "Marshall–Olkin distribution: parameter estimation and application to cancer data," Journal of Applied Statistics, Taylor & Francis Journals, vol. 44(12), pages 2238-2250, September.
  146. Fei Xiong & Yun Liu, 2012. "Empirical Analysis and Modeling of Users' Topic Interests in Online Forums," PLOS ONE, Public Library of Science, vol. 7(12), pages 1-7, December.
  147. Chen, Tao & Shao, Zhi-Gang, 2012. "Power-law accelerating growth complex networks with mixed attachment mechanisms," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 391(8), pages 2778-2787.
  148. Gerhardt, Günther J.L. & Lemke, Ney & Corso, Gilberto, 2006. "Network clustering coefficient approach to DNA sequence analysis," Chaos, Solitons & Fractals, Elsevier, vol. 28(4), pages 1037-1045.
  149. Šubelj, Lovro & Bajec, Marko, 2014. "Group detection in complex networks: An algorithm and comparison of the state of the art," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 397(C), pages 144-156.
  150. Salamanca Beatriz Valcarcel & Ebbels Timothy M.D. & Iorio Maria De, 2014. "Variance and covariance heterogeneity analysis for detection of metabolites associated with cadmium exposure," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 13(2), pages 191-201, April.
  151. Huaylla, Claudia A. & Nacif, Marcos E. & Coulin, Carolina & Kuperman, Marcelo N. & Garibaldi, Lucas A., 2021. "Decoding information in multilayer ecological networks: The keystone species case," Ecological Modelling, Elsevier, vol. 460(C).
  152. Laurienti, Paul J. & Joyce, Karen E. & Telesford, Qawi K. & Burdette, Jonathan H. & Hayasaka, Satoru, 2011. "Universal fractal scaling of self-organized networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 390(20), pages 3608-3613.
  153. Chen, Qinghua & Shi, Dinghua, 2004. "The modeling of scale-free networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 335(1), pages 240-248.
  154. Patrick C F Buchholz & Catharina Zeil & Jürgen Pleiss, 2018. "The scale-free nature of protein sequence space," PLOS ONE, Public Library of Science, vol. 13(8), pages 1-14, August.
  155. Colman, E.R. & Rodgers, G.J., 2013. "Complex scale-free networks with tunable power-law exponent and clustering," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 392(21), pages 5501-5510.
  156. Zhou, Yaoming & Kundu, Tanmoy & Qin, Wei & Goh, Mark & Sheu, Jiuh-Biing, 2021. "Vulnerability of the worldwide air transportation network to global catastrophes such as COVID-19," Transportation Research Part E: Logistics and Transportation Review, Elsevier, vol. 154(C).
  157. Yan, Deng-Cheng & Li, Ming & Wang, Bing-Hong, 2017. "Dependence centrality similarity: Measuring the diversity of profession levels of interests," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 479(C), pages 118-127.
  158. Liu, X. & Murata, T., 2010. "Advanced modularity-specialized label propagation algorithm for detecting communities in networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 389(7), pages 1493-1500.
  159. Riccardo Muolo & Joseph D. O’Brien & Timoteo Carletti & Malbor Asllani, 2024. "Persistence of chimera states and the challenge for synchronization in real-world networks," The European Physical Journal B: Condensed Matter and Complex Systems, Springer;EDP Sciences, vol. 97(1), pages 1-16, January.
  160. Wang, Li-Na & Wang, Kai & Shen, Jiang-Long, 2020. "Weighted complex networks in urban public transportation: Modeling and testing," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 545(C).
  161. Roland Pongou & Guy Tchuente & Jean-Baptiste Tondji, 2021. "Optimally Targeting Interventions in Networks during a Pandemic: Theory and Evidence from the Networks of Nursing Homes in the United States," Papers 2110.10230, arXiv.org.
  162. Kazanci, C. & Ma, Q., 2012. "Extending ecological network analysis measures to dynamic ecosystem models," Ecological Modelling, Elsevier, vol. 242(C), pages 180-188.
  163. Zhang, Zhongzhi & Rong, Lili & Comellas, Francesc, 2006. "High-dimensional random Apollonian networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 364(C), pages 610-618.
  164. Peng-Xiang Li & Meng-Wu Zhang & You-Min Xi & Wen-Tian Cui, 2009. "Why organizational networks in reality do not show scale-free distributions," Computational and Mathematical Organization Theory, Springer, vol. 15(3), pages 169-190, September.
  165. Sun, Lanfang & Jiang, Lu & Li, Menghui & He, Dacheng, 2006. "Statistical analysis of gene regulatory networks reconstructed from gene expression data of lung cancer," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 370(2), pages 663-671.
  166. Yamasaki, Kazuko & Matia, Kaushik & Buldyrev, Sergey V. & Fu, Dongfeng & Pammolli, Fabio & Riccaboni, Massimo & Stanley, H. Eugene, 2004. "Preferential attachment and growth dynamics in complex systems," MPRA Paper 15908, University Library of Munich, Germany, revised 06 Feb 2006.
  167. Wu, Xiaoqun, 2008. "Synchronization-based topology identification of weighted general complex dynamical networks with time-varying coupling delay," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 387(4), pages 997-1008.
  168. Manchanda, Kaustubh & Bose, Amitabha & Ramaswamy, Ramakrishna, 2017. "Collective dynamics in heterogeneous networks of neuronal cellular automata," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 487(C), pages 111-124.
  169. Saeid Rasti & Chrysafis Vogiatzis, 2019. "A survey of computational methods in protein–protein interaction networks," Annals of Operations Research, Springer, vol. 276(1), pages 35-87, May.
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