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Estimating Coarse Gene Network Structure from Large-Scale Gene Perturbation Data

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Author Info
Andreas Wagner
Abstract

Large scale gene perturbation experiments generate information about the number of genes whose activity is directly or indirectly affected by a gene perturbation. From this information, one can numerically estimate coarse structural network features such as the total number of direct regulatory interactions and the number of isolated subnetworks in a transcriptional regulation network. Applied to the results of a large-scale gene knockout experiment in the yeast Saccharomyces cerevisiae, the results suggests that the yeast transcriptional regulatory network is very sparse, containing no more direct regulatory interactions than genes. The network comprises more than one hundred independent sub-networks.

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Paper provided by Santa Fe Institute in its series Working Papers with number 01-09-051.

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Date of creation: Sep 2001
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Handle: RePEc:wop:safiwp:01-09-051

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Related research
Keywords: Genomics; reverse engineering; microarrays;

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This paper has been announced in the following NEP Reports: References listed on IDEAS
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  1. Andreas Wagner & David Fell, 2000. "The Small World Inside Large Metabolic Networks," Working Papers 00-07-041, Santa Fe Institute.
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Cited by:
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  1. Romualdo Pastor-Satorras & Eric Smith & Ricard V. Solé, 2002. "Evolving Protein Interaction Networks through Gene Duplication," Working Papers 02-02-008, Santa Fe Institute.
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This page was last updated on 2009-11-20.


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