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An obesity-associated gut microbiome with increased capacity for energy harvest

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  1. James Robert White & Niranjan Nagarajan & Mihai Pop, 2009. "Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples," PLOS Computational Biology, Public Library of Science, vol. 5(4), pages 1-11, April.
  2. Vinod Nikhra, 2019. "Therapeutic Potential of Gut Microbiome Manipulation: Concepts in Fecal Microbiota Transplantation," Current Research in Diabetes & Obesity Journal, Juniper Publishers Inc., vol. 11(1), pages 9-17, June.
  3. Chihiro Morita & Hirokazu Tsuji & Tomokazu Hata & Motoharu Gondo & Shu Takakura & Keisuke Kawai & Kazufumi Yoshihara & Kiyohito Ogata & Koji Nomoto & Kouji Miyazaki & Nobuyuki Sudo, 2015. "Gut Dysbiosis in Patients with Anorexia Nervosa," PLOS ONE, Public Library of Science, vol. 10(12), pages 1-13, December.
  4. Doratha A Byrd & Jun Chen & Emily Vogtmann & Autumn Hullings & Se Jin Song & Amnon Amir & Muhammad G Kibriya & Habibul Ahsan & Yu Chen & Heidi Nelson & Rob Knight & Jianxin Shi & Nicholas Chia & Rashm, 2019. "Reproducibility, stability, and accuracy of microbial profiles by fecal sample collection method in three distinct populations," PLOS ONE, Public Library of Science, vol. 14(11), pages 1-19, November.
  5. Mengci Li & Shouli Wang & Yitao Li & Mingliang Zhao & Junliang Kuang & Dandan Liang & Jieyi Wang & Meilin Wei & Cynthia Rajani & Xinran Ma & Yajun Tang & Zhenxing Ren & Tianlu Chen & Aihua Zhao & Chen, 2022. "Gut microbiota-bile acid crosstalk contributes to the rebound weight gain after calorie restriction in mice," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
  6. Dongxiao Zhang & Danni Zhong & Jiang Ouyang & Jian He & Yuchen Qi & Wei Chen & Xingcai Zhang & Wei Tao & Min Zhou, 2022. "Microalgae-based oral microcarriers for gut microbiota homeostasis and intestinal protection in cancer radiotherapy," Nature Communications, Nature, vol. 13(1), pages 1-18, December.
  7. Alessandra N. Bazzano & Kaitlin S. Potts & Lydia A. Bazzano & John B. Mason, 2017. "The Life Course Implications of Ready to Use Therapeutic Food for Children in Low-Income Countries," IJERPH, MDPI, vol. 14(4), pages 1-19, April.
  8. Eryun Zhang & Lihua Jin & Yangmeng Wang & Jui Tu & Ruirong Zheng & Lili Ding & Zhipeng Fang & Mingjie Fan & Ismail Al-Abdullah & Rama Natarajan & Ke Ma & Zhengtao Wang & Arthur D. Riggs & Sarah C. Shu, 2022. "Intestinal AMPK modulation of microbiota mediates crosstalk with brown fat to control thermogenesis," Nature Communications, Nature, vol. 13(1), pages 1-10, December.
  9. Gwinyai Masukume & Ali S Khashan & Susan M B Morton & Philip N Baker & Louise C Kenny & Fergus P McCarthy, 2019. "Caesarean section delivery and childhood obesity in a British longitudinal cohort study," PLOS ONE, Public Library of Science, vol. 14(10), pages 1-13, October.
  10. Barbara Emmenegger & Julien Massoni & Christine M. Pestalozzi & Miriam Bortfeld-Miller & Benjamin A. Maier & Julia A. Vorholt, 2023. "Identifying microbiota community patterns important for plant protection using synthetic communities and machine learning," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
  11. Yunjia Lai & Chih-Wei Liu & Yifei Yang & Yun-Chung Hsiao & Hongyu Ru & Kun Lu, 2021. "High-coverage metabolomics uncovers microbiota-driven biochemical landscape of interorgan transport and gut-brain communication in mice," Nature Communications, Nature, vol. 12(1), pages 1-16, December.
  12. Xu, Zhiheng & Liu, Yucheng & Williams, Isaiah & Li, Yan & Qian, Fengyu & Wang, Lei & Lei, Yu & Li, Baikun, 2017. "Flat enzyme-based lactate biofuel cell integrated with power management system: Towards long term in situ power supply for wearable sensors," Applied Energy, Elsevier, vol. 194(C), pages 71-80.
  13. Małgorzata Moszak & Monika Szulińska & Marta Walczak-Gałęzewska & Paweł Bogdański, 2021. "Nutritional Approach Targeting Gut Microbiota in NAFLD—To Date," IJERPH, MDPI, vol. 18(4), pages 1-32, February.
  14. Hui Xia & Beijia Zhou & Jing Sui & Wenqing Ma & Shaokang Wang & Ligang Yang & Guiju Sun, 2022. "Lycium barbarum Polysaccharide Regulates the Lipid Metabolism and Alters Gut Microbiota in High-Fat Diet Induced Obese Mice," IJERPH, MDPI, vol. 19(19), pages 1-12, September.
  15. Ozren Stojanović & Jordi Altirriba & Dorothée Rigo & Martina Spiljar & Emilien Evrard & Benedek Roska & Salvatore Fabbiano & Nicola Zamboni & Pierre Maechler & Françoise Rohner-Jeanrenaud & Mirko Traj, 2021. "Dietary excess regulates absorption and surface of gut epithelium through intestinal PPARα," Nature Communications, Nature, vol. 12(1), pages 1-15, December.
  16. Zemin Zheng & Jinchi Lv & Wei Lin, 2021. "Nonsparse Learning with Latent Variables," Operations Research, INFORMS, vol. 69(1), pages 346-359, January.
  17. Davillas, Apostolos & Pudney, Stephen, 2016. "Concordance of health states in couples. Analysis of self-reported, nurse administered and blood-based biomarker data in Understanding Society," ISER Working Paper Series 2016-15, Institute for Social and Economic Research.
  18. Kiran Konain & Sadia & Turfa Nadeem & Adeed Khan & Warda Iqbal & Arsalan & Amir Javed & Ruby Khan & Kainat Jamil & Kainat Jamil, 2018. "Importance of Probiotics in Gastrointestinal Tract," Journal of Asian Scientific Research, Asian Economic and Social Society, vol. 8(3), pages 128-143, March.
  19. Liat Shenhav & Ori Furman & Leah Briscoe & Mike Thompson & Justin D Silverman & Itzhak Mizrahi & Eran Halperin, 2019. "Modeling the temporal dynamics of the gut microbial community in adults and infants," PLOS Computational Biology, Public Library of Science, vol. 15(6), pages 1-21, June.
  20. Feng Tong & Teng Wang & Na L. Gao & Ziying Liu & Kuiqing Cui & Yiqian Duan & Sicheng Wu & Yuhong Luo & Zhipeng Li & Chengjian Yang & Yixue Xu & Bo Lin & Liguo Yang & Alfredo Pauciullo & Deshun Shi & G, 2022. "The microbiome of the buffalo digestive tract," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
  21. Rajita Menon & Vivek Ramanan & Kirill S Korolev, 2018. "Interactions between species introduce spurious associations in microbiome studies," PLOS Computational Biology, Public Library of Science, vol. 14(1), pages 1-20, January.
  22. Erin Leahey & Jina Lee & Russell J. Funk, 2023. "What Types of Novelty Are Most Disruptive?," American Sociological Review, , vol. 88(3), pages 562-597, June.
  23. Koji Hosomi & Mayu Saito & Jonguk Park & Haruka Murakami & Naoko Shibata & Masahiro Ando & Takahiro Nagatake & Kana Konishi & Harumi Ohno & Kumpei Tanisawa & Attayeb Mohsen & Yi-An Chen & Hitoshi Kawa, 2022. "Oral administration of Blautia wexlerae ameliorates obesity and type 2 diabetes via metabolic remodeling of the gut microbiota," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
  24. Ankita Das & Sandeep Das & Nandita Das & Prisha Pandey & Birson Ingti & Vladimir Panchenko & Vadim Bolshev & Andrey Kovalev & Piyush Pandey, 2023. "Advancements and Innovations in Harnessing Microbial Processes for Enhanced Biogas Production from Waste Materials," Agriculture, MDPI, vol. 13(9), pages 1-34, August.
  25. Marjolein Heddes & Baraa Altaha & Yunhui Niu & Sandra Reitmeier & Karin Kleigrewe & Dirk Haller & Silke Kiessling, 2022. "The intestinal clock drives the microbiome to maintain gastrointestinal homeostasis," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
  26. Marina Sanchez & Shirin Panahi & Angelo Tremblay, 2014. "Childhood Obesity: A Role for Gut Microbiota?," IJERPH, MDPI, vol. 12(1), pages 1-14, December.
  27. Melissa K Friswell & Helen Gika & Ian J Stratford & Georgios Theodoridis & Brian Telfer & Ian D Wilson & Andrew J McBain, 2010. "Site and Strain-Specific Variation in Gut Microbiota Profiles and Metabolism in Experimental Mice," PLOS ONE, Public Library of Science, vol. 5(1), pages 1-9, January.
  28. Dongyang Yang & Wei Xu, 2023. "Estimation of Mediation Effect on Zero-Inflated Microbiome Mediators," Mathematics, MDPI, vol. 11(13), pages 1-16, June.
  29. Xiaoyu Li* & Zhibang Yang & Jia Liu & Ying Jiang, 2019. "High-throughput Sequencing Analysis and Function Prediction of Lung Microbiota in Healthy Rats," International Journal of Healthcare and Medical Sciences, Academic Research Publishing Group, vol. 5(3), pages 12-17, 03-2019.
  30. Mile Volarić & Dunja Šojat & Ljiljana Trtica Majnarić & Domagoj Vučić, 2024. "The Association between Functional Dyspepsia and Metabolic Syndrome—The State of the Art," IJERPH, MDPI, vol. 21(2), pages 1-19, February.
  31. Daniel Beck & James A Foster, 2014. "Machine Learning Techniques Accurately Classify Microbial Communities by Bacterial Vaginosis Characteristics," PLOS ONE, Public Library of Science, vol. 9(2), pages 1-8, February.
  32. Vinod Nikhra, 2019. "Therapeutic Potential of Gut Microbiome Manipulation: Concepts in Fecal Microbiota Transplantation," Current Research in Diabetes & Obesity Journal, Juniper Publishers Inc., vol. 11(1), pages 1-9, June.
  33. Gary M King & Craig Judd & Cheryl R Kuske & Conor Smith, 2012. "Analysis of Stomach and Gut Microbiomes of the Eastern Oyster (Crassostrea virginica) from Coastal Louisiana, USA," PLOS ONE, Public Library of Science, vol. 7(12), pages 1-11, December.
  34. Hiroki Tashiro & Koichiro Takahashi & Masaru Uchida & Yuki Kurihara & Hironori Sadamatsu & Ayako Takamori & Shinya Kimura & Naoko Sueoka-Aragane, 2023. "Effect of Azithromycin on Exacerbations in Asthma Patients with Obesity: Protocol for a Multi-Center, Prospective, Single-Arm Intervention Study," IJERPH, MDPI, vol. 20(3), pages 1-10, January.
  35. Karen D. Corbin & Elvis A. Carnero & Blake Dirks & Daria Igudesman & Fanchao Yi & Andrew Marcus & Taylor L. Davis & Richard E. Pratley & Bruce E. Rittmann & Rosa Krajmalnik-Brown & Steven R. Smith, 2023. "Host-diet-gut microbiome interactions influence human energy balance: a randomized clinical trial," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
  36. Michael DiMarzio & Brigida Rusconi & Neela H Yennawar & Mark Eppinger & Andrew D Patterson & Edward G Dudley, 2017. "Identification of a mouse Lactobacillus johnsonii strain with deconjugase activity against the FXR antagonist T-β-MCA," PLOS ONE, Public Library of Science, vol. 12(9), pages 1-15, September.
  37. Ruth Nussinov & Jason A Papin, 2017. "How can computation advance microbiome research?," PLOS Computational Biology, Public Library of Science, vol. 13(9), pages 1-3, September.
  38. Jonathan B. Lynch & Erika L. Gonzalez & Kayli Choy & Kym F. Faull & Talia Jewell & Abelardo Arellano & Jennifer Liang & Kristie B. Yu & Jorge Paramo & Elaine Y. Hsiao, 2023. "Gut microbiota Turicibacter strains differentially modify bile acids and host lipids," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
  39. Hanan H. Wahid & Ayesha Bahez & Mohammed I. A. Mustafa Mahmud & Farih N. Hashim & Norhidayah Kamarudin & Roesnita Baharuddin & Ahmad M. Ahmad Mustafa & Hamizah Ismail, 2022. "Maternal Risk Factors For Group B Streptococcus (Gbs) Vaginal Colonization," Acta Scientifica Malaysia (ASM), Zibeline International Publishing, vol. 6(2), pages 55-58, August.
  40. Cristiane R. S. Câmara & Carlos A. Urrea & Vicki Schlegel, 2013. "Pinto Beans ( Phaseolus vulgaris L.) as a Functional Food: Implications on Human Health," Agriculture, MDPI, vol. 3(1), pages 1-22, February.
  41. Haoyu Wang & Shanghua Wu & Yuxiu Zhang & Tsing Bohu & Zhihui Bai & Xuliang Zhuang, 2022. "Understanding the Implications of Predicted Function for Assessment of Rapid Bioremediation in a Farmland-Oilfield Mixed Area," Sustainability, MDPI, vol. 14(4), pages 1-14, February.
  42. Nicola Mucci & Eleonora Tommasi & Annarita Chiarelli & Lucrezia Ginevra Lulli & Veronica Traversini & Raymond Paul Galea & Giulio Arcangeli, 2022. "WORKbiota: A Systematic Review about the Effects of Occupational Exposure on Microbiota and Workers’ Health," IJERPH, MDPI, vol. 19(3), pages 1-18, January.
  43. Amirhossein Shamsaddini & Kimia Dadkhah & Patrick M Gillevet, 2020. "BiomMiner: An advanced exploratory microbiome analysis and visualization pipeline," PLOS ONE, Public Library of Science, vol. 15(6), pages 1-13, June.
  44. Gertrude Ecklu-Mensah & Candice Choo-Kang & Maria Gjerstad Maseng & Sonya Donato & Pascal Bovet & Bharathi Viswanathan & Kweku Bedu-Addo & Jacob Plange-Rhule & Prince Oti Boateng & Terrence E. Forrest, 2023. "Gut microbiota and fecal short chain fatty acids differ with adiposity and country of origin: the METS-microbiome study," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
  45. Vinod Nikhra, 2019. "The Novel Dimensions of Cardio-Metabolic Health Gut Microbiota, Dysbiosis and its Fallouts," Current Research in Diabetes & Obesity Journal, Juniper Publishers Inc., vol. 11(1), pages 28-37, June.
  46. Karthik Darmasseelane & Matthew J Hyde & Shalini Santhakumaran & Chris Gale & Neena Modi, 2014. "Mode of Delivery and Offspring Body Mass Index, Overweight and Obesity in Adult Life: A Systematic Review and Meta-Analysis," PLOS ONE, Public Library of Science, vol. 9(2), pages 1-15, February.
  47. Xiuying Zhang & Dongqian Shen & Zhiwei Fang & Zhuye Jie & Xinmin Qiu & Chunfang Zhang & Yingli Chen & Linong Ji, 2013. "Human Gut Microbiota Changes Reveal the Progression of Glucose Intolerance," PLOS ONE, Public Library of Science, vol. 8(8), pages 1-11, August.
  48. Elisa Scarsella & Bruno Stefanon & Michela Cintio & Danilo Licastro & Sandy Sgorlon & Simeone Dal Monego & Misa Sandri, 2020. "Learning machine approach reveals microbial signatures of diet and sex in dog," PLOS ONE, Public Library of Science, vol. 15(8), pages 1-21, August.
  49. Jeffrey D Galley & Michael Bailey & Claire Kamp Dush & Sarah Schoppe-Sullivan & Lisa M Christian, 2014. "Maternal Obesity Is Associated with Alterations in the Gut Microbiome in Toddlers," PLOS ONE, Public Library of Science, vol. 9(11), pages 1-13, November.
  50. Shinji Fukuda & Yumiko Nakanishi & Eisuke Chikayama & Hiroshi Ohno & Tsuneo Hino & Jun Kikuchi, 2009. "Evaluation and Characterization of Bacterial Metabolic Dynamics with a Novel Profiling Technique, Real-Time Metabolotyping," PLOS ONE, Public Library of Science, vol. 4(3), pages 1-10, March.
  51. Lukas Schwingshackl & Georg Hoffmann & Carolina Schwedhelm & Tamara Kalle-Uhlmann & Benjamin Missbach & Sven Knüppel & Heiner Boeing, 2016. "Consumption of Dairy Products in Relation to Changes in Anthropometric Variables in Adult Populations: A Systematic Review and Meta-Analysis of Cohort Studies," PLOS ONE, Public Library of Science, vol. 11(6), pages 1-15, June.
  52. Kotaro Soeda & Takayoshi Sasako & Kenichiro Enooku & Naoto Kubota & Naoki Kobayashi & Yoshiko Matsumoto Ikushima & Motoharu Awazawa & Ryotaro Bouchi & Gotaro Toda & Tomoharu Yamada & Takuma Nakatsuka , 2023. "Gut insulin action protects from hepatocarcinogenesis in diabetic mice comorbid with nonalcoholic steatohepatitis," Nature Communications, Nature, vol. 14(1), pages 1-18, December.
  53. Tamar Ringel-Kulka & Jing Cheng & Yehuda Ringel & Jarkko Salojärvi & Ian Carroll & Airi Palva & Willem M de Vos & Reetta Satokari, 2013. "Intestinal Microbiota in Healthy U.S. Young Children and Adults—A High Throughput Microarray Analysis," PLOS ONE, Public Library of Science, vol. 8(5), pages 1-10, May.
  54. Hannah Lees & Jonathan Swann & Simon M Poucher & Jeremy K Nicholson & Elaine Holmes & Ian D Wilson & Julian R Marchesi, 2014. "Age and Microenvironment Outweigh Genetic Influence on the Zucker Rat Microbiome," PLOS ONE, Public Library of Science, vol. 9(9), pages 1-11, September.
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