Robustness in simple biochemical networks

Citations

Cited by:

1. Diana Clausznitzer & Olga Oleksiuk & Linda Løvdok & Victor Sourjik & Robert G Endres, 2010. "Chemotactic Response and Adaptation Dynamics in Escherichia coli," PLOS Computational Biology, Public Library of Science, vol. 6(5), pages 1-11, May.
2. Robert Planqué & Josephus Hulshof & Bas Teusink & Johannes C Hendriks & Frank J Bruggeman, 2018. "Maintaining maximal metabolic flux by gene expression control," PLOS Computational Biology, Public Library of Science, vol. 14(9), pages 1-20, September.
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7. Robert M Cooper & Ned S Wingreen & Edward C Cox, 2012. "An Excitable Cortex and Memory Model Successfully Predicts New Pseudopod Dynamics," PLOS ONE, Public Library of Science, vol. 7(3), pages 1-12, March.
8. Jinlong Yuan & Lei Wang & Xu Zhang & Enmin Feng & Hongchao Yin & Zhilong Xiu, 2015. "Parameter identification for a nonlinear enzyme-catalytic dynamic system with time-delays," Journal of Global Optimization, Springer, vol. 62(4), pages 791-810, August.
9. Gabriele Micali & Gerardo Aquino & David M Richards & Robert G Endres, 2015. "Accurate Encoding and Decoding by Single Cells: Amplitude Versus Frequency Modulation," PLOS Computational Biology, Public Library of Science, vol. 11(6), pages 1-21, June.
10. Martin J. Falk & Adam T. Strupp & Benjamin Scellier & Arvind Murugan, 2025. "Temporal Contrastive Learning through implicit non-equilibrium memory," Nature Communications, Nature, vol. 16(1), pages 1-13, December.
11. repec:plo:pbio00:0030343 is not listed on IDEAS
12. repec:plo:pgen00:1000919 is not listed on IDEAS
13. Jae Kyoung Kim & Trachette L Jackson, 2013. "Mechanisms That Enhance Sustainability of p53 Pulses," PLOS ONE, Public Library of Science, vol. 8(6), pages 1-11, June.
14. repec:plo:pone00:0136095 is not listed on IDEAS
15. Robyn P. Araujo & Lance A. Liotta, 2023. "Universal structures for adaptation in biochemical reaction networks," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
16. Guillermo Rodrigo & Santiago F Elena, 2011. "Structural Discrimination of Robustness in Transcriptional Feedforward Loops for Pattern Formation," PLOS ONE, Public Library of Science, vol. 6(2), pages 1-7, February.
17. Zeina Shreif & Vipul Periwal, 2014. "A Network Characteristic That Correlates Environmental and Genetic Robustness," PLOS Computational Biology, Public Library of Science, vol. 10(2), pages 1-23, February.
18. repec:plo:pone00:0032467 is not listed on IDEAS
19. repec:plo:pcbi00:1000242 is not listed on IDEAS
20. Dong, Gaogao & Tian, Lixin & Du, Ruijin & Fu, Min & Stanley, H. Eugene, 2014. "Analysis of percolation behaviors of clustered networks with partial support–dependence relations," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 394(C), pages 370-378.
21. repec:plo:pmed00:0030208 is not listed on IDEAS
22. Junjie Luo & Jun Wang & Ting Martin Ma & Zhirong Sun, 2010. "Reverse Engineering of Bacterial Chemotaxis Pathway via Frequency Domain Analysis," PLOS ONE, Public Library of Science, vol. 5(3), pages 1-8, March.
23. Kirstin Meyer & Nicholas C. Lammers & Lukasz J. Bugaj & Hernan G. Garcia & Orion D. Weiner, 2023. "Optogenetic control of YAP reveals a dynamic communication code for stem cell fate and proliferation," Nature Communications, Nature, vol. 14(1), pages 1-18, December.
24. Jalili, Mahdi, 2011. "Error and attack tolerance of small-worldness in complex networks," Journal of Informetrics, Elsevier, vol. 5(3), pages 422-430.
25. Miri Adler & Avi Mayo & Uri Alon, 2014. "Logarithmic and Power Law Input-Output Relations in Sensory Systems with Fold-Change Detection," PLOS Computational Biology, Public Library of Science, vol. 10(8), pages 1-14, August.
26. repec:plo:pone00:0011224 is not listed on IDEAS
27. Niklas Korsbo & Henrik Jönsson, 2020. "It’s about time: Analysing simplifying assumptions for modelling multi-step pathways in systems biology," PLOS Computational Biology, Public Library of Science, vol. 16(6), pages 1-29, June.
28. Yuan, Jinlong & Zhu, Xi & Zhang, Xu & Yin, Hongchao & Feng, Enmin & Xiu, Zhilong, 2014. "Robust identification of enzymatic nonlinear dynamical systems for 1,3-propanediol transport mechanisms in microbial batch culture," Applied Mathematics and Computation, Elsevier, vol. 232(C), pages 150-163.
29. David A Sivak & Matt Thomson, 2014. "Environmental Statistics and Optimal Regulation," PLOS Computational Biology, Public Library of Science, vol. 10(9), pages 1-12, September.
30. Jonathan R Karr & Alex H Williams & Jeremy D Zucker & Andreas Raue & Bernhard Steiert & Jens Timmer & Clemens Kreutz & DREAM8 Parameter Estimation Challenge Consortium & Simon Wilkinson & Brandon A Al, 2015. "Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models," PLOS Computational Biology, Public Library of Science, vol. 11(5), pages 1-21, May.
31. Jiang, Xiong-Fei & Xiong, Long & Bai, Ling & Lin, Jie & Zhang, Jing-Feng & Yan, Kun & Zhu, Jia-Zhen & Zheng, Bo & Zheng, Jian-Jun, 2022. "Structure and dynamics of human complication-disease network," Chaos, Solitons & Fractals, Elsevier, vol. 164(C).
32. repec:plo:pone00:0029716 is not listed on IDEAS
33. Burton W Andrews & Tau-Mu Yi & Pablo A Iglesias, 2006. "Optimal Noise Filtering in the Chemotactic Response of Escherichia coli," PLOS Computational Biology, Public Library of Science, vol. 2(11), pages 1-12, November.
34. Diana Clausznitzer & Gabriele Micali & Silke Neumann & Victor Sourjik & Robert G Endres, 2014. "Predicting Chemical Environments of Bacteria from Receptor Signaling," PLOS Computational Biology, Public Library of Science, vol. 10(10), pages 1-14, October.
35. repec:plo:pcbi00:0030142 is not listed on IDEAS