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Statistical Inference for Partially Observed Markov Processes via the R Package pomp

Citations

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Cited by:

  1. Helske, Jouni, 2017. "KFAS: Exponential Family State Space Models in R," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 78(i10).
  2. Lux, Thomas, 2022. "Inference for Nonlinear State Space Models: A Comparison of Different Methods applied to Markov-Switching Multifractal Models," Econometrics and Statistics, Elsevier, vol. 21(C), pages 69-95.
  3. Maria Masotti & Lin Zhang & Ethan Leng & Gregory J. Metzger & Joseph S. Koopmeiners, 2023. "A novel Bayesian functional spatial partitioning method with application to prostate cancer lesion detection using MRI," Biometrics, The International Biometric Society, vol. 79(2), pages 604-615, June.
  4. repec:plo:pcbi00:1007305 is not listed on IDEAS
  5. Sawitree Boonpatcharanon & Jane M Heffernan & Hanna Jankowski, 2022. "Estimating the basic reproduction number at the beginning of an outbreak," PLOS ONE, Public Library of Science, vol. 17(6), pages 1-24, June.
  6. Guido España & Zulma M Cucunubá & Hernando Diaz & Sean Cavany & Nelson Castañeda & Laura Rodriguez, 2022. "Designing school reopening in the COVID-19 pre-vaccination period in Bogotá, Colombia: A modeling study," PLOS Global Public Health, Public Library of Science, vol. 2(6), pages 1-18, June.
  7. Oscar García, 2019. "Estimating reducible stochastic differential equations by conversion to a least-squares problem," Computational Statistics, Springer, vol. 34(1), pages 23-46, March.
  8. Driver, Charles C. & Oud, Johan H. L. & Voelkle, Manuel C., 2017. "Continuous Time Structural Equation Modeling with R Package ctsem," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 77(i05).
  9. Matthieu Domenech de Cellès & Anabelle Wong & Tine Dalby & Pejman Rohani, 2025. "Natural immune boosting biases pertussis infection estimates in seroprevalence studies," Nature Communications, Nature, vol. 16(1), pages 1-13, December.
  10. repec:plo:pcbi00:1005642 is not listed on IDEAS
  11. Jonathan Fintzi & Jon Wakefield & Vladimir N. Minin, 2022. "A linear noise approximation for stochastic epidemic models fit to partially observed incidence counts," Biometrics, The International Biometric Society, vol. 78(4), pages 1530-1541, December.
  12. Teague R. Henry & Lindley R. Slipetz & Ami Falk & Jiaxing Qiu & Meng Chen, 2024. "Ordinal Outcome State-Space Models for Intensive Longitudinal Data," Psychometrika, Springer;The Psychometric Society, vol. 89(4), pages 1203-1229, December.
  13. Hooker, Giles & Ramsay, James O. & Xiao, Luo, 2016. "CollocInfer: Collocation Inference in Differential Equation Models," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 75(i02).
  14. Samuel W. Akingbade, 2026. "Null-Validated Topological Signatures of Financial Market Dynamics," Papers 2602.00383, arXiv.org.
  15. Eslami, Keyvan & Lee, Hyunju, 2024. "Overreaction and the value of information in a pandemic," European Economic Review, Elsevier, vol. 161(C).
  16. Elizabeth Goult & Laura Andrea Barrero Guevara & Michael Briga & Matthieu Domenech de Cellès, 2024. "Estimating the optimal age for infant measles vaccination," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
  17. Johannes Bracher & Leonhard Held, 2021. "A marginal moment matching approach for fitting endemic‐epidemic models to underreported disease surveillance counts," Biometrics, The International Biometric Society, vol. 77(4), pages 1202-1214, December.
  18. Heather Williams & Andrew Scharf & Anna R. Ryba & D. Ryan Norris & Daniel J. Mennill & Amy E. M. Newman & Stéphanie M. Doucet & Julie C. Blackwood, 2022. "Cumulative cultural evolution and mechanisms for cultural selection in wild bird songs," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
  19. Catherine M Byrne & Ana Citlali Márquez & Bing Cai & Daniel Coombs & Soren Gantt, 2024. "Spatial kinetics and immune control of murine cytomegalovirus infection in the salivary glands," PLOS Computational Biology, Public Library of Science, vol. 20(8), pages 1-21, August.
  20. King, Aaron A. & Lin, Qianying & Ionides, Edward L., 2022. "Markov genealogy processes," Theoretical Population Biology, Elsevier, vol. 143(C), pages 77-91.
  21. Lawrence W Sheppard & Emma J Defriez & Philip C Reid & Daniel C Reuman, 2019. "Synchrony is more than its top-down and climatic parts: interacting Moran effects on phytoplankton in British seas," PLOS Computational Biology, Public Library of Science, vol. 15(3), pages 1-25, March.
  22. Tobias S Brett & Eamon B O’Dea & Éric Marty & Paige B Miller & Andrew W Park & John M Drake & Pejman Rohani, 2018. "Anticipating epidemic transitions with imperfect data," PLOS Computational Biology, Public Library of Science, vol. 14(6), pages 1-18, June.
  23. Lux, Thomas, 2018. "Inference for nonlinear state space models: A comparison of different methods applied to Markov-switching multifractal models," Economics Working Papers 2018-07, Christian-Albrechts-University of Kiel, Department of Economics.
  24. Drennan, Avery & Covington, Jeffrey & Han, Dan & Attilio, Andrew & Lee, Jaechoul & Posner, Richard & Doerry, Eck & Mihaljevic, Joseph & Chen, Ye, 2026. "Estimating dynamic transmission rates with a Black–Karasinski process in stochastic SIHR models using particle MCMC," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 684(C).
  25. Donnat, Claire & Klopp, Olga & Verzelen, Nicolas, 2026. "Denoising over networks with applications to partially observed epidemics," Computational Statistics & Data Analysis, Elsevier, vol. 215(C).
  26. Quentin Clairon & Adeline Samson, 2020. "Optimal control for estimation in partially observed elliptic and hypoelliptic linear stochastic differential equations," Statistical Inference for Stochastic Processes, Springer, vol. 23(1), pages 105-127, April.
  27. Sarah C. Kramer & Sarah Pirikahu & Jean-Sébastien Casalegno & Matthieu Domenech de Cellès, 2024. "Characterizing the interactions between influenza and respiratory syncytial viruses and their implications for epidemic control," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
  28. Michael Briga & Elizabeth Goult & Tobias S. Brett & Pejman Rohani & Matthieu Domenech de Cellès, 2024. "Maternal pertussis immunization and the blunting of routine vaccine effectiveness: a meta-analysis and modeling study," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
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