IDEAS home Printed from https://ideas.repec.org/a/wly/envmet/v31y2020i8ne2644.html
   My bibliography  Save this article

A joint Bayesian space–time model to integrate spatially misaligned air pollution data in R‐INLA

Author

Listed:
  • C. Forlani
  • S. Bhatt
  • M. Cameletti
  • E. Krainski
  • M. Blangiardo

Abstract

In air pollution studies, dispersion models provide estimates of concentration at grid level covering the entire spatial domain and are then calibrated against measurements from monitoring stations. However, these different data sources are misaligned in space and time. If misalignment is not considered, it can bias the predictions. We aim at demonstrating how the combination of multiple data sources, such as dispersion model outputs, ground observations, and covariates, leads to more accurate predictions of air pollution at grid level. We consider nitrogen dioxide (NO2) concentration in Greater London and surroundings for the years 2007–2011 and combine two different dispersion models. Different sets of spatial and temporal effects are included in order to obtain the best predictive capability. Our proposed model is framed in between calibration and Bayesian melding techniques for data fusion. Unlike other examples, we jointly model the response (concentration level at monitoring stations) and the dispersion model outputs on different scales, accounting for the different sources of uncertainty. Our spatiotemporal model allows us to reconstruct the latent fields of each model component, and to predict daily pollution concentrations. We compare the predictive capability of our proposed model with other established methods to account for misalignment (e.g., bilinear interpolation), showing that in our case study the joint model is a better alternative.

Suggested Citation

  • C. Forlani & S. Bhatt & M. Cameletti & E. Krainski & M. Blangiardo, 2020. "A joint Bayesian space–time model to integrate spatially misaligned air pollution data in R‐INLA," Environmetrics, John Wiley & Sons, Ltd., vol. 31(8), December.
  • Handle: RePEc:wly:envmet:v:31:y:2020:i:8:n:e2644
    DOI: 10.1002/env.2644
    as

    Download full text from publisher

    File URL: https://doi.org/10.1002/env.2644
    Download Restriction: no

    File URL: https://libkey.io/10.1002/env.2644?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Sujit K. Sahu & Alan E. Gelfand & David M. Holland, 2010. "Fusing point and areal level space–time data with application to wet deposition," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 59(1), pages 77-103, January.
    2. Gavin Shaddick & Jon Wakefield, 2002. "Modelling daily multivariate pollutant data at multiple sites," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 51(3), pages 351-372, July.
    3. Finn Lindgren & Håvard Rue & Johan Lindström, 2011. "An explicit link between Gaussian fields and Gaussian Markov random fields: the stochastic partial differential equation approach," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 73(4), pages 423-498, September.
    4. Duncan Lee & Claire Ferguson & E. Marian Scott, 2011. "Constructing representative air quality indicators with measures of uncertainty," Journal of the Royal Statistical Society Series A, Royal Statistical Society, vol. 174(1), pages 109-126, January.
    5. Martins, Thiago G. & Simpson, Daniel & Lindgren, Finn & Rue, Håvard, 2013. "Bayesian computing with INLA: New features," Computational Statistics & Data Analysis, Elsevier, vol. 67(C), pages 68-83.
    6. Gneiting, Tilmann & Raftery, Adrian E., 2007. "Strictly Proper Scoring Rules, Prediction, and Estimation," Journal of the American Statistical Association, American Statistical Association, vol. 102, pages 359-378, March.
    7. Alan E. Gelfand & Sujit K. Sahu & David M. Holland, 2012. "On the effect of preferential sampling in spatial prediction," Environmetrics, John Wiley & Sons, Ltd., vol. 23(7), pages 565-578, November.
    8. Gavin Shaddick & Matthew L. Thomas & Amelia Green & Michael Brauer & Aaron van Donkelaar & Rick Burnett & Howard H. Chang & Aaron Cohen & Rita Van Dingenen & Carlos Dora & Sophie Gumy & Yang Liu & Ran, 2018. "Data integration model for air quality: a hierarchical approach to the global estimation of exposures to ambient air pollution," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 67(1), pages 231-253, January.
    9. Lindgren, Finn & Rue, Håvard, 2015. "Bayesian Spatial Modelling with R-INLA," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 63(i19).
    10. Geir-Arne Fuglstad & Daniel Simpson & Finn Lindgren & Håvard Rue, 2019. "Constructing Priors that Penalize the Complexity of Gaussian Random Fields," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 114(525), pages 445-452, January.
    11. Montserrat Fuentes & Adrian E. Raftery, 2005. "Model Evaluation and Spatial Interpolation by Bayesian Combination of Observations with Outputs from Numerical Models," Biometrics, The International Biometric Society, vol. 61(1), pages 36-45, March.
    12. Veronica J. Berrocal & Alan E. Gelfand & David M. Holland, 2012. "Space-Time Data fusion Under Error in Computer Model Output: An Application to Modeling Air Quality," Biometrics, The International Biometric Society, vol. 68(3), pages 837-848, September.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Xiaoyu Xiong & Benjamin D. Youngman & Theodoros Economou, 2021. "Data fusion with Gaussian processes for estimation of environmental hazard events," Environmetrics, John Wiley & Sons, Ltd., vol. 32(3), May.
    2. Sara Zapata‐Marin & Alexandra M. Schmidt & Scott Weichenthal & Eric Lavigne, 2023. "Modeling temporally misaligned data across space: The case of total pollen concentration in Toronto," Environmetrics, John Wiley & Sons, Ltd., vol. 34(8), December.
    3. Jaewoo Park & Sangwan Lee, 2022. "A projection‐based Laplace approximation for spatial latent variable models," Environmetrics, John Wiley & Sons, Ltd., vol. 33(1), February.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Chen, Yewen & Chang, Xiaohui & Luo, Fangzhi & Huang, Hui, 2023. "Additive dynamic models for correcting numerical model outputs," Computational Statistics & Data Analysis, Elsevier, vol. 187(C).
    2. Wang, Craig & Furrer, Reinhard, 2021. "Combining heterogeneous spatial datasets with process-based spatial fusion models: A unifying framework," Computational Statistics & Data Analysis, Elsevier, vol. 161(C).
    3. Paige, John & Fuglstad, Geir-Arne & Riebler, Andrea & Wakefield, Jon, 2022. "Bayesian multiresolution modeling of georeferenced data: An extension of ‘LatticeKrig’," Computational Statistics & Data Analysis, Elsevier, vol. 173(C).
    4. John M. Humphreys & Robert B. Srygley & David H. Branson, 2022. "Geographic Variation in Migratory Grasshopper Recruitment under Projected Climate Change," Geographies, MDPI, vol. 2(1), pages 1-19, January.
    5. Silius M. Vandeskog & Sara Martino & Daniela Castro-Camilo & Håvard Rue, 2022. "Modelling Sub-daily Precipitation Extremes with the Blended Generalised Extreme Value Distribution," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 27(4), pages 598-621, December.
    6. I. Gede Nyoman Mindra Jaya & Henk Folmer, 2022. "Spatiotemporal high-resolution prediction and mapping: methodology and application to dengue disease," Journal of Geographical Systems, Springer, vol. 24(4), pages 527-581, October.
    7. Peter A. Gao & Hannah M. Director & Cecilia M. Bitz & Adrian E. Raftery, 2022. "Probabilistic Forecasts of Arctic Sea Ice Thickness," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 27(2), pages 280-302, June.
    8. Andre Python & Andreas Bender & Marta Blangiardo & Janine B. Illian & Ying Lin & Baoli Liu & Tim C.D. Lucas & Siwei Tan & Yingying Wen & Davit Svanidze & Jianwei Yin, 2022. "A downscaling approach to compare COVID‐19 count data from databases aggregated at different spatial scales," Journal of the Royal Statistical Society Series A, Royal Statistical Society, vol. 185(1), pages 202-218, January.
    9. Xiaoyu Xiong & Benjamin D. Youngman & Theodoros Economou, 2021. "Data fusion with Gaussian processes for estimation of environmental hazard events," Environmetrics, John Wiley & Sons, Ltd., vol. 32(3), May.
    10. Jacqueline D. Seufert & Andre Python & Christoph Weisser & Elías Cisneros & Krisztina Kis‐Katos & Thomas Kneib, 2022. "Mapping ex ante risks of COVID‐19 in Indonesia using a Bayesian geostatistical model on airport network data," Journal of the Royal Statistical Society Series A, Royal Statistical Society, vol. 185(4), pages 2121-2155, October.
    11. Lucia Paci & Alan E. Gelfand & and María Asunción Beamonte & Pilar Gargallo & Manuel Salvador, 2020. "Spatial hedonic modelling adjusted for preferential sampling," Journal of the Royal Statistical Society Series A, Royal Statistical Society, vol. 183(1), pages 169-192, January.
    12. Brian Conroy & Lance A. Waller & Ian D. Buller & Gregory M. Hacker & James R. Tucker & Mark G. Novak, 2023. "A Shared Latent Process Model to Correct for Preferential Sampling in Disease Surveillance Systems," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 28(3), pages 483-501, September.
    13. Aaron Osgood‐Zimmerman & Jon Wakefield, 2023. "A Statistical Review of Template Model Builder: A Flexible Tool for Spatial Modelling," International Statistical Review, International Statistical Institute, vol. 91(2), pages 318-342, August.
    14. Sameh Abdulah & Yuxiao Li & Jian Cao & Hatem Ltaief & David E. Keyes & Marc G. Genton & Ying Sun, 2023. "Large‐scale environmental data science with ExaGeoStatR," Environmetrics, John Wiley & Sons, Ltd., vol. 34(1), February.
    15. John M. Humphreys, 2022. "Amplification in Time and Dilution in Space: Partitioning Spatiotemporal Processes to Assess the Role of Avian-Host Phylodiversity in Shaping Eastern Equine Encephalitis Virus Distribution," Geographies, MDPI, vol. 2(3), pages 1-16, July.
    16. Luis A. Barboza & Shu Wei Chou Chen & Marcela Alfaro Córdoba & Eric J. Alfaro & Hugo G. Hidalgo, 2023. "Spatio‐temporal downscaling emulator for regional climate models," Environmetrics, John Wiley & Sons, Ltd., vol. 34(7), November.
    17. Carlos Díaz-Avalos & Pablo Juan & Somnath Chaudhuri & Marc Sáez & Laura Serra, 2020. "Association between the New COVID-19 Cases and Air Pollution with Meteorological Elements in Nine Counties of New York State," IJERPH, MDPI, vol. 17(23), pages 1-18, December.
    18. Brian J. Reich & Howard H. Chang & Kristen M. Foley, 2014. "A spectral method for spatial downscaling," Biometrics, The International Biometric Society, vol. 70(4), pages 932-942, December.
    19. Jorge Sicacha-Parada & Diego Pavon-Jordan & Ingelin Steinsland & Roel May & Bård Stokke & Ingar Jostein Øien, 2022. "A Spatial Modeling Framework for Monitoring Surveys with Different Sampling Protocols with a Case Study for Bird Abundance in Mid-Scandinavia," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 27(3), pages 562-591, September.
    20. Daisuke Murakami & Morito Tsutsumi, 2015. "Area-to-point parameter estimation with geographically weighted regression," Journal of Geographical Systems, Springer, vol. 17(3), pages 207-225, July.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:wly:envmet:v:31:y:2020:i:8:n:e2644. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Wiley Content Delivery (email available below). General contact details of provider: http://www.interscience.wiley.com/jpages/1180-4009/ .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.