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Constructing Priors that Penalize the Complexity of Gaussian Random Fields

Author

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  • Geir-Arne Fuglstad
  • Daniel Simpson
  • Finn Lindgren
  • Håvard Rue

Abstract

Priors are important for achieving proper posteriors with physically meaningful covariance structures for Gaussian random fields (GRFs) since the likelihood typically only provides limited information about the covariance structure under in-fill asymptotics. We extend the recent penalized complexity prior framework and develop a principled joint prior for the range and the marginal variance of one-dimensional, two-dimensional, and three-dimensional Matérn GRFs with fixed smoothness. The prior is weakly informative and penalizes complexity by shrinking the range toward infinity and the marginal variance toward zero. We propose guidelines for selecting the hyperparameters, and a simulation study shows that the new prior provides a principled alternative to reference priors that can leverage prior knowledge to achieve shorter credible intervals while maintaining good coverage.We extend the prior to a nonstationary GRF parameterized through local ranges and marginal standard deviations, and introduce a scheme for selecting the hyperparameters based on the coverage of the parameters when fitting simulated stationary data. The approach is applied to a dataset of annual precipitation in southern Norway and the scheme for selecting the hyperparameters leads to conservative estimates of nonstationarity and improved predictive performance over the stationary model. Supplementary materials for this article are available online.

Suggested Citation

  • Geir-Arne Fuglstad & Daniel Simpson & Finn Lindgren & Håvard Rue, 2019. "Constructing Priors that Penalize the Complexity of Gaussian Random Fields," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 114(525), pages 445-452, January.
  • Handle: RePEc:taf:jnlasa:v:114:y:2019:i:525:p:445-452
    DOI: 10.1080/01621459.2017.1415907
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    12. Tim C. D. Lucas & Anita K. Nandi & Elisabeth G. Chestnutt & Katherine A. Twohig & Suzanne H. Keddie & Emma L. Collins & Rosalind E. Howes & Michele Nguyen & Susan F. Rumisha & Andre Python & Rohan Ara, 2021. "Mapping malaria by sharing spatial information between incidence and prevalence data sets," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 70(3), pages 733-749, June.
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    14. Annika K. Gunderson & Rani E. Kumar & Cristina Recalde-Coronel & Luis E. Vasco & Andree Valle-Campos & Carlos F. Mena & Benjamin F. Zaitchik & Andres G. Lescano & William K. Pan & Mark M. Janko, 2020. "Malaria Transmission and Spillover across the Peru–Ecuador Border: A Spatiotemporal Analysis," IJERPH, MDPI, vol. 17(20), pages 1-9, October.
    15. Wilson, Bradley, 2020. "Evaluating the INLA-SPDE approach for Bayesian modeling of earthquake damages from geolocated cluster data," Earth Arxiv 64whm, Center for Open Science.
    16. Jonathan Wakefield & Taylor Okonek & Jon Pedersen, 2020. "Small Area Estimation for Disease Prevalence Mapping," International Statistical Review, International Statistical Institute, vol. 88(2), pages 398-418, August.
    17. Jorge Sicacha-Parada & Diego Pavon-Jordan & Ingelin Steinsland & Roel May & Bård Stokke & Ingar Jostein Øien, 2022. "A Spatial Modeling Framework for Monitoring Surveys with Different Sampling Protocols with a Case Study for Bird Abundance in Mid-Scandinavia," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 27(3), pages 562-591, September.
    18. Silius M. Vandeskog & Sara Martino & Daniela Castro-Camilo & Håvard Rue, 2022. "Modelling Sub-daily Precipitation Extremes with the Blended Generalised Extreme Value Distribution," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 27(4), pages 598-621, December.
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