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Bayesian Spatial Modelling with R-INLA

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  • Lindgren, Finn
  • Rue, Håvard

Abstract

The principles behind the interface to continuous domain spatial models in the RINLA software package for R are described. The integrated nested Laplace approximation (INLA) approach proposed by Rue, Martino, and Chopin (2009) is a computationally effective alternative to MCMC for Bayesian inference. INLA is designed for latent Gaussian models, a very wide and flexible class of models ranging from (generalized) linear mixed to spatial and spatio-temporal models. Combined with the stochastic partial differential equation approach (SPDE, Lindgren, Rue, and Lindström 2011), one can accommodate all kinds of geographically referenced data, including areal and geostatistical ones, as well as spatial point process data. The implementation interface covers stationary spatial models, non-stationary spatial models, and also spatio-temporal models, and is applicable in epidemiology, ecology, environmental risk assessment, as well as general geostatistics.

Suggested Citation

  • Lindgren, Finn & Rue, Håvard, 2015. "Bayesian Spatial Modelling with R-INLA," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 63(i19).
    • Handle: RePEc:jss:jstsof:v:063:i19
    DOI: http://hdl.handle.net/10.18637/jss.v063.i19
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    References listed on IDEAS

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    1. Håvard Rue & Sara Martino & Nicolas Chopin, 2009. "Approximate Bayesian inference for latent Gaussian models by using integrated nested Laplace approximations," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 71(2), pages 319-392, April.
    2. Finn Lindgren & Håvard Rue & Johan Lindström, 2011. "An explicit link between Gaussian fields and Gaussian Markov random fields: the stochastic partial differential equation approach," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 73(4), pages 423-498, September.
    3. Noel Cressie & Gardar Johannesson, 2008. "Fixed rank kriging for very large spatial data sets," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 70(1), pages 209-226, February.
    4. Bolin, David & Lindgren, Finn, 2013. "A comparison between Markov approximations and other methods for large spatial data sets," Computational Statistics & Data Analysis, Elsevier, vol. 61(C), pages 7-21.
    5. David Bolin & Finn Lindgren, 2015. "Excursion and contour uncertainty regions for latent Gaussian models," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 77(1), pages 85-106, January.
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