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Bayesian truncated beta nonlinear mixed-effects models

Author

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  • Carolina Costa Mota Paraíba
  • Natalia Bochkina
  • Carlos Alberto Ribeiro Diniz

Abstract

Truncated regression models arise in many applications where it is not possible to observe values of the response variable that are above or below certain thresholds. We propose a Bayesian truncated beta nonlinear mixed-effects model by considering the truncated variable to follow a truncated beta distribution. The mean parameter of the distribution is modeled by a nonlinear function of unknown fixed parameters and covariates and by random effects. The proposed model is suitable for response variables, y, bounded to an interval $ (a,b) $ (a,b) without the need to consider a transformed variable $ y^{*} = (y-a)/(b-a) $ y∗=(y−a)/(b−a) to apply the well-known beta regression model and its extensions, which are primarily appropriate for responses in the interval $ (0,1) $ (0,1). Bayesian estimates and credible intervals are computed based on draws from the posterior distribution of parameters generated using an MCMC procedure. Posterior predictive checks, Bayesian standardized residuals and a Bayesian influence measures are considered for model diagnostics. Model selection is performed using the sum of log-CPO metric and a Bayesian model selection criterion based on Bayesian mixture modeling. Simulated datasets are used for prior sensitivity analysis and to evaluate finite sample properties of Bayesian estimates. The model is applied to a real dataset on soil–water retention.

Suggested Citation

  • Carolina Costa Mota Paraíba & Natalia Bochkina & Carlos Alberto Ribeiro Diniz, 2018. "Bayesian truncated beta nonlinear mixed-effects models," Journal of Applied Statistics, Taylor & Francis Journals, vol. 45(2), pages 320-346, January.
  • Handle: RePEc:taf:japsta:v:45:y:2018:i:2:p:320-346
    DOI: 10.1080/02664763.2016.1276891
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    References listed on IDEAS

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    1. Chen, Songnian & Zhou, Xianbo, 2012. "Semiparametric estimation of a truncated regression model," Journal of Econometrics, Elsevier, vol. 167(2), pages 297-304.
    2. A. Gelman & Y. Goegebeur & F. Tuerlinckx & I. Van Mechelen, 2000. "Diagnostic checks for discrete data regression models using posterior predictive simulations," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 49(2), pages 247-268.
    3. Silvia Ferrari & Francisco Cribari-Neto, 2004. "Beta Regression for Modelling Rates and Proportions," Journal of Applied Statistics, Taylor & Francis Journals, vol. 31(7), pages 799-815.
    4. Figueroa-Zúñiga, Jorge I. & Arellano-Valle, Reinaldo B. & Ferrari, Silvia L.P., 2013. "Mixed beta regression: A Bayesian perspective," Computational Statistics & Data Analysis, Elsevier, vol. 61(C), pages 137-147.
    5. Jacobo de Uña-Álvarez & Han-Ying Liang & Alberto Rodríguez-Casal, 2010. "Nonlinear wavelet estimator of the regression function under left-truncated dependent data," Journal of Nonparametric Statistics, Taylor & Francis Journals, vol. 22(3), pages 319-344.
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