IDEAS home Printed from https://ideas.repec.org/a/plo/pone00/0256470.html
   My bibliography  Save this article

Splitting Gaussian processes for computationally-efficient regression

Author

Listed:
  • Nick Terry
  • Youngjun Choe

Abstract

Gaussian processes offer a flexible kernel method for regression. While Gaussian processes have many useful theoretical properties and have proven practically useful, they suffer from poor scaling in the number of observations. In particular, the cubic time complexity of updating standard Gaussian process models can be a limiting factor in applications. We propose an algorithm for sequentially partitioning the input space and fitting a localized Gaussian process to each disjoint region. The algorithm is shown to have superior time and space complexity to existing methods, and its sequential nature allows the model to be updated efficiently. The algorithm constructs a model for which the time complexity of updating is tightly bounded above by a pre-specified parameter. To the best of our knowledge, the model is the first local Gaussian process regression model to achieve linear memory complexity. Theoretical continuity properties of the model are proven. We demonstrate the efficacy of the resulting model on several multi-dimensional regression tasks.

Suggested Citation

  • Nick Terry & Youngjun Choe, 2021. "Splitting Gaussian processes for computationally-efficient regression," PLOS ONE, Public Library of Science, vol. 16(8), pages 1-17, August.
  • Handle: RePEc:plo:pone00:0256470
    DOI: 10.1371/journal.pone.0256470
    as

    Download full text from publisher

    File URL: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0256470
    Download Restriction: no

    File URL: https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0256470&type=printable
    Download Restriction: no

    File URL: https://libkey.io/10.1371/journal.pone.0256470?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Gramacy, Robert B & Lee, Herbert K. H, 2008. "Bayesian Treed Gaussian Process Models With an Application to Computer Modeling," Journal of the American Statistical Association, American Statistical Association, vol. 103(483), pages 1119-1130.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Matthew W. Wheeler, 2019. "Bayesian additive adaptive basis tensor product models for modeling high dimensional surfaces: an application to high‐throughput toxicity testing," Biometrics, The International Biometric Society, vol. 75(1), pages 193-201, March.
    2. Florian Huber & Luca Rossini, 2020. "Inference in Bayesian Additive Vector Autoregressive Tree Models," Papers 2006.16333, arXiv.org, revised Mar 2021.
    3. Erickson, Collin B. & Ankenman, Bruce E. & Sanchez, Susan M., 2018. "Comparison of Gaussian process modeling software," European Journal of Operational Research, Elsevier, vol. 266(1), pages 179-192.
    4. Monterrubio-Gómez, Karla & Roininen, Lassi & Wade, Sara & Damoulas, Theodoros & Girolami, Mark, 2020. "Posterior inference for sparse hierarchical non-stationary models," Computational Statistics & Data Analysis, Elsevier, vol. 148(C).
    5. Andrew Hoegh & Marco A. R. Ferreira & Scotland Leman, 2016. "Spatiotemporal model fusion: multiscale modelling of civil unrest," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 65(4), pages 529-545, August.
    6. Touzani, Samir & Busby, Daniel, 2013. "Smoothing spline analysis of variance approach for global sensitivity analysis of computer codes," Reliability Engineering and System Safety, Elsevier, vol. 112(C), pages 67-81.
    7. Marco H. Benedetti & Veronica J. Berrocal & Naveen N. Narisetty, 2022. "Identifying regions of inhomogeneities in spatial processes via an M‐RA and mixture priors," Biometrics, The International Biometric Society, vol. 78(2), pages 798-811, June.
    8. Kelly R. Moran & Matthew W. Wheeler, 2022. "Fast increased fidelity samplers for approximate Bayesian Gaussian process regression," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 84(4), pages 1198-1228, September.
    9. Jing Chang & Herbert K.H. Lee, 2015. "Variable selection via a multi-stage strategy," Journal of Applied Statistics, Taylor & Francis Journals, vol. 42(4), pages 762-774, April.
    10. Bozağaç, Doruk & Batmaz, İnci & Oğuztüzün, Halit, 2016. "Dynamic simulation metamodeling using MARS: A case of radar simulation," Mathematics and Computers in Simulation (MATCOM), Elsevier, vol. 124(C), pages 69-86.
    11. Lian, Heng & Li, Gaorong, 2014. "Series expansion for functional sufficient dimension reduction," Journal of Multivariate Analysis, Elsevier, vol. 124(C), pages 150-165.
    12. Maria Masotti & Lin Zhang & Ethan Leng & Gregory J. Metzger & Joseph S. Koopmeiners, 2023. "A novel Bayesian functional spatial partitioning method with application to prostate cancer lesion detection using MRI," Biometrics, The International Biometric Society, vol. 79(2), pages 604-615, June.
    13. Yang, Dazhi & Gueymard, Christian A., 2019. "Producing high-quality solar resource maps by integrating high- and low-accuracy measurements using Gaussian processes," Renewable and Sustainable Energy Reviews, Elsevier, vol. 113(C), pages 1-1.
    14. Debdeep Pati & David Dunson, 2014. "Bayesian nonparametric regression with varying residual density," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 66(1), pages 1-31, February.
    15. Paulo, Rui & García-Donato, Gonzalo & Palomo, Jesús, 2012. "Calibration of computer models with multivariate output," Computational Statistics & Data Analysis, Elsevier, vol. 56(12), pages 3959-3974.
    16. Kleijnen, J.P.C., 2009. "Sensitivity Analysis of Simulation Models," Discussion Paper 2009-11, Tilburg University, Center for Economic Research.
    17. Horiguchi, Akira & Pratola, Matthew T. & Santner, Thomas J., 2021. "Assessing variable activity for Bayesian regression trees," Reliability Engineering and System Safety, Elsevier, vol. 207(C).
    18. MacDonald, Blake & Ranjan, Pritam & Chipman, Hugh, 2015. "GPfit: An R Package for Fitting a Gaussian Process Model to Deterministic Simulator Outputs," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 64(i12).
    19. Matthew Plumlee, 2014. "Fast Prediction of Deterministic Functions Using Sparse Grid Experimental Designs," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 109(508), pages 1581-1591, December.
    20. Daniel W. Gladish & Daniel E. Pagendam & Luk J. M. Peeters & Petra M. Kuhnert & Jai Vaze, 2018. "Emulation Engines: Choice and Quantification of Uncertainty for Complex Hydrological Models," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 23(1), pages 39-62, March.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pone00:0256470. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: plosone (email available below). General contact details of provider: https://journals.plos.org/plosone/ .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.