IDEAS home Printed from https://ideas.repec.org/a/plo/pbio00/0050011.html
   My bibliography  Save this article

Evolution, Interactions, and Biological Networks

Author

Listed:
  • Joshua S Weitz
  • Philip N Benfey
  • Ned S Wingreen

Abstract

Shifting the perspective of the questions we ask will ensure that network theory continues to excite the network theorists, but more importantly, that it remains vital to progress in biological research.

Suggested Citation

  • Joshua S Weitz & Philip N Benfey & Ned S Wingreen, 2007. "Evolution, Interactions, and Biological Networks," PLOS Biology, Public Library of Science, vol. 5(1), pages 1-3, January.
    • Handle: RePEc:plo:pbio00:0050011
    DOI: 10.1371/journal.pbio.0050011
    as

    Download full text from publisher

    File URL: https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.0050011
    Download Restriction: no
    File URL: https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.0050011&type=printable
    Download Restriction: no
    File URL: https://libkey.io/10.1371/journal.pbio.0050011?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Christopher T. Harbison & D. Benjamin Gordon & Tong Ihn Lee & Nicola J. Rinaldi & Kenzie D. Macisaac & Timothy W. Danford & Nancy M. Hannett & Jean-Bosco Tagne & David B. Reynolds & Jane Yoo & Ezra G., 2004. "Transcriptional regulatory code of a eukaryotic genome," Nature, Nature, vol. 431(7004), pages 99-104, September.
    2. Leland H. Hartwell & John J. Hopfield & Stanislas Leibler & Andrew W. Murray, 1999. "From molecular to modular cell biology," Nature, Nature, vol. 402(6761), pages 47-52, December.
    3. Steven H. Strogatz, 2001. "Exploring complex networks," Nature, Nature, vol. 410(6825), pages 268-276, March.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Alexander Rivkind & Hallel Schreier & Naama Brenner & Omri Barak, 2020. "Scale free topology as an effective feedback system," PLOS Computational Biology, Public Library of Science, vol. 16(5), pages 1-24, May.
    2. Samrat Chatterjee & Dhiraj Kumar, 2011. "Unraveling the Design Principle for Motif Organization in Signaling Networks," PLOS ONE, Public Library of Science, vol. 6(12), pages 1-9, December.
    3. Anupam Saxena & Hod Lipson & Francisco J Valero-Cuevas, 2012. "Functional Inference of Complex Anatomical Tendinous Networks at a Macroscopic Scale via Sparse Experimentation," PLOS Computational Biology, Public Library of Science, vol. 8(11), pages 1-17, November.
    4. Hütt, M.-Th. & Lüttge, U., 2005. "The interplay of synchronization and fluctuations reveals connectivity levels in networks of nonlinear oscillators," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 350(2), pages 207-226.
    5. Emerson, Isaac Arnold & Amala, Arumugam, 2017. "Protein contact maps: A binary depiction of protein 3D structures," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 465(C), pages 782-791.
    6. Ruiz Vargas, E. & Mitchell, D.G.V. & Greening, S.G. & Wahl, L.M., 2014. "Topology of whole-brain functional MRI networks: Improving the truncated scale-free model," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 405(C), pages 151-158.
    7. Igor Belykh & Mateusz Bocian & Alan R. Champneys & Kevin Daley & Russell Jeter & John H. G. Macdonald & Allan McRobie, 2021. "Emergence of the London Millennium Bridge instability without synchronisation," Nature Communications, Nature, vol. 12(1), pages 1-14, December.
    8. Berahmand, Kamal & Bouyer, Asgarali & Samadi, Negin, 2018. "A new centrality measure based on the negative and positive effects of clustering coefficient for identifying influential spreaders in complex networks," Chaos, Solitons & Fractals, Elsevier, vol. 110(C), pages 41-54.
    9. Zhang, Yun & Liu, Yongguo & Li, Jieting & Zhu, Jiajing & Yang, Changhong & Yang, Wen & Wen, Chuanbiao, 2020. "WOCDA: A whale optimization based community detection algorithm," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 539(C).
    10. Soh, Harold & Lim, Sonja & Zhang, Tianyou & Fu, Xiuju & Lee, Gary Kee Khoon & Hung, Terence Gih Guang & Di, Pan & Prakasam, Silvester & Wong, Limsoon, 2010. "Weighted complex network analysis of travel routes on the Singapore public transportation system," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 389(24), pages 5852-5863.
    11. Wang, Qingyun & Duan, Zhisheng & Chen, Guanrong & Feng, Zhaosheng, 2008. "Synchronization in a class of weighted complex networks with coupling delays," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 387(22), pages 5616-5622.
    12. He, He & Yang, Bo & Hu, Xiaoming, 2016. "Exploring community structure in networks by consensus dynamics," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 450(C), pages 342-353.
    13. Wu, Tianyu & Huang, Xia & Chen, Xiangyong & Wang, Jing, 2020. "Sampled-data H∞ exponential synchronization for delayed semi-Markov jump CDNs: A looped-functional approach," Applied Mathematics and Computation, Elsevier, vol. 377(C).
    14. Yang, Hyeonchae & Jung, Woo-Sung, 2016. "Structural efficiency to manipulate public research institution networks," Technological Forecasting and Social Change, Elsevier, vol. 110(C), pages 21-32.
    15. Zhu, Mixin & Zhou, Xiaojun, 2023. "Hybrid opportunistic maintenance policy for serial-parallel multi-station manufacturing systems with spare part overlap," Reliability Engineering and System Safety, Elsevier, vol. 236(C).
    16. Ye, Dan & Yang, Xiang & Su, Lei, 2017. "Fault-tolerant synchronization control for complex dynamical networks with semi-Markov jump topology," Applied Mathematics and Computation, Elsevier, vol. 312(C), pages 36-48.
    17. Dragicevic, Arnaud Z. & Sinclair-Desgagné, Bernard, 2013. "Sustainable network dynamics," Ecological Modelling, Elsevier, vol. 270(C), pages 43-53.
    18. Luo, Mengzhuo & Liu, Xinzhi & Zhong, Shouming & Cheng, Jun, 2018. "Synchronization of multi-stochastic-link complex networks via aperiodically intermittent control with two different switched periods," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 509(C), pages 20-38.
    19. Wei, Daijun & Deng, Xinyang & Zhang, Xiaoge & Deng, Yong & Mahadevan, Sankaran, 2013. "Identifying influential nodes in weighted networks based on evidence theory," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 392(10), pages 2564-2575.
    20. Matvei Khoroshkin & Andrey Buyan & Martin Dodel & Albertas Navickas & Johnny Yu & Fathima Trejo & Anthony Doty & Rithvik Baratam & Shaopu Zhou & Sean B. Lee & Tanvi Joshi & Kristle Garcia & Benedict C, 2024. "Systematic identification of post-transcriptional regulatory modules," Nature Communications, Nature, vol. 15(1), pages 1-21, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pbio00:0050011. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: plosbiology (email available below). General contact details of provider: https://journals.plos.org/plosbiology/ .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.