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Dynamics of transposable element accumulation in the non-recombining regions of mating-type chromosomes in anther-smut fungi

Author

Listed:
  • Marine Duhamel

    (Ecologie Systématique Evolution, IDEEV, CNRS, Université Paris-Saclay
    Evolution der Pflanzen und Pilze, Ruhr-Universität Bochum, Universitätsstraße 150)

  • Michael E. Hood

    (Department of Biology, Amherst College)

  • Ricardo C. Rodríguez de la Vega

    (Ecologie Systématique Evolution, IDEEV, CNRS, Université Paris-Saclay)

  • Tatiana Giraud

    (Ecologie Systématique Evolution, IDEEV, CNRS, Université Paris-Saclay)

Abstract

In the absence of recombination, the number of transposable elements (TEs) increases due to less efficient selection, but the dynamics of such TE accumulations are not well characterized. Leveraging a dataset of 21 independent events of recombination cessation of different ages in mating-type chromosomes of Microbotryum fungi, we show that TEs rapidly accumulated in regions lacking recombination, but that TE content reached a plateau at ca. 50% of occupied base pairs by 1.5 million years following recombination suppression. The same TE superfamilies have expanded in independently evolved non-recombining regions, in particular rolling-circle replication elements (Helitrons). Long-terminal repeat (LTR) retrotransposons of the Copia and Ty3 superfamilies also expanded, through transposition bursts (distinguished from gene conversion based on LTR divergence), with both non-recombining regions and autosomes affected, suggesting that non-recombining regions constitute TE reservoirs. This study improves our knowledge of genome evolution by showing that TEs can accumulate through bursts, following non-linear decelerating dynamics.

Suggested Citation

  • Marine Duhamel & Michael E. Hood & Ricardo C. Rodríguez de la Vega & Tatiana Giraud, 2023. "Dynamics of transposable element accumulation in the non-recombining regions of mating-type chromosomes in anther-smut fungi," Nature Communications, Nature, vol. 14(1), pages 1-18, December.
    • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-41413-4
    DOI: 10.1038/s41467-023-41413-4
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