IDEAS home Printed from https://ideas.repec.org/a/gam/jlands/v10y2021i6p558-d562883.html
   My bibliography  Save this article

Predicting Bioaccumulation of Potentially Toxic Element in Soil–Rice Systems Using Multi-Source Data and Machine Learning Methods: A Case Study of an Industrial City in Southeast China

Author

Listed:
  • Modian Xie

    (Key Laboratory of Environment Remediation and Ecological Health, Ministry of Education, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
    Department of Land Resource Management, School of Tourism and Urban Management, Jiangxi University of Finance and Economics, Nanchang 330013, China)

  • Hongyi Li

    (Department of Land Resource Management, School of Tourism and Urban Management, Jiangxi University of Finance and Economics, Nanchang 330013, China)

  • Youwei Zhu

    (Protection and Monitoring Station of Agricultural Environment, Bureau of Agriculture of Department of Rural and Agriculture of Zhejiang Province, Hangzhou 310020, China)

  • Jie Xue

    (Key Laboratory of Environment Remediation and Ecological Health, Ministry of Education, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
    Institute of Agricultural Remote Sensing and Information Technology Application, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China)

  • Qihao You

    (Eco-Environmental Science & Research Institute of Zhejiang Province, Hangzhou 310012, China)

  • Bin Jin

    (Ningbo Agricultural Food Safety Management Station, Ningbo 315000, China)

  • Zhou Shi

    (Key Laboratory of Environment Remediation and Ecological Health, Ministry of Education, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
    Institute of Agricultural Remote Sensing and Information Technology Application, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China)

Abstract

Potentially toxic element (PTE) pollution in farmland soils and crops is a serious cause of concern in China. To analyze the bioaccumulation characteristics of chromium (Cr), zinc (Zn), copper (Cu), and nickel (Ni) in soil-rice systems, 911 pairs of top soil (0–0.2 m) and rice samples were collected from an industrial city in Southeast China. Multiple linear regression (MLR), support vector machines (SVM), random forest (RF), and Cubist were employed to construct models to predict the bioaccumulation coefficient (BAC) of PTEs in soil–rice systems and determine the potential dominators for PTE transfer from soil to rice grains. Cr, Cu, Zn, and Ni contents in soil of the survey region were higher than corresponding background contents in China. The mean Ni content of rice grains exceeded the national permissible limit, whereas the concentrations of Cr, Cu, and Zn were lower than their thresholds. The BAC of PTEs kept the sequence of Zn (0.219) > Cu (0.093) > Ni (0.032) > Cr (0.018). Of the four algorithms employed to estimate the bioaccumulation of Cr, Cu, Zn, and Ni in soil–rice systems, RF exhibited the best performance, with coefficient of determination (R 2 ) ranging from 0.58 to 0.79 and root mean square error (RMSE) ranging from 0.03 to 0.04 mg kg −1 . Total PTE concentration in soil, cation exchange capacity (CEC), and annual average precipitation were identified as top 3 dominators influencing PTE transfer from soil to rice grains. This study confirmed the feasibility and advantages of machine learning methods especially RF for estimating PTE accumulation in soil–rice systems, when compared with traditional statistical methods, such as MLR. Our study provides new tools for analyzing the transfer of PTEs from soil to rice, and can help decision-makers in developing more efficient policies for regulating PTE pollution in soil and crops, and reducing the corresponding health risks.

Suggested Citation

  • Modian Xie & Hongyi Li & Youwei Zhu & Jie Xue & Qihao You & Bin Jin & Zhou Shi, 2021. "Predicting Bioaccumulation of Potentially Toxic Element in Soil–Rice Systems Using Multi-Source Data and Machine Learning Methods: A Case Study of an Industrial City in Southeast China," Land, MDPI, vol. 10(6), pages 1-17, May.
  • Handle: RePEc:gam:jlands:v:10:y:2021:i:6:p:558-:d:562883
    as

    Download full text from publisher

    File URL: https://www.mdpi.com/2073-445X/10/6/558/pdf
    Download Restriction: no

    File URL: https://www.mdpi.com/2073-445X/10/6/558/
    Download Restriction: no
    ---><---

    References listed on IDEAS

    as
    1. Tomislav Hengl & Jorge Mendes de Jesus & Gerard B M Heuvelink & Maria Ruiperez Gonzalez & Milan Kilibarda & Aleksandar Blagotić & Wei Shangguan & Marvin N Wright & Xiaoyuan Geng & Bernhard Bauer-Marsc, 2017. "SoilGrids250m: Global gridded soil information based on machine learning," PLOS ONE, Public Library of Science, vol. 12(2), pages 1-40, February.
    2. Piao Liu & Zhenhua Liu & Yueming Hu & Zhou Shi & Yuchun Pan & Lu Wang & Guangxing Wang, 2019. "Integrating a Hybrid Back Propagation Neural Network and Particle Swarm Optimization for Estimating Soil Heavy Metal Contents Using Hyperspectral Data," Sustainability, MDPI, vol. 11(2), pages 1-15, January.
    3. Kyoko Ono & Tetsuo Yasutaka & Takehiko I Hayashi & Masashi Kamo & Yuichi Iwasaki & Taizo Nakamori & Yoshikazu Fujii & Takafumi Kamitani, 2019. "Model construction for estimating potential vulnerability of Japanese soils to cadmium pollution based on intact soil properties," PLOS ONE, Public Library of Science, vol. 14(6), pages 1-17, June.
    4. Bifeng Hu & Songchao Chen & Jie Hu & Fang Xia & Junfeng Xu & Yan Li & Zhou Shi, 2017. "Application of portable XRF and VNIR sensors for rapid assessment of soil heavy metal pollution," PLOS ONE, Public Library of Science, vol. 12(2), pages 1-13, February.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Fang Xia & Youwei Zhu & Bifeng Hu & Xueyao Chen & Hongyi Li & Kejian Shi & Liuchang Xu, 2021. "Pollution Characteristics, Spatial Patterns, and Sources of Toxic Elements in Soils from a Typical Industrial City of Eastern China," Land, MDPI, vol. 10(11), pages 1-20, October.
    2. Ping Li & Tao Wu & Guojun Jiang & Lijie Pu & Yan Li & Jianzhen Zhang & Fei Xu & Xuefeng Xie, 2021. "An Integrated Approach for Source Apportionment and Health Risk Assessment of Heavy Metals in Subtropical Agricultural Soils, Eastern China," Land, MDPI, vol. 10(10), pages 1-17, September.
    3. Yingfan Zhang & Tingting Fu & Xueyao Chen & Hancheng Guo & Hongyi Li & Bifeng Hu, 2022. "Modeling Cadmium Contents in a Soil–Rice System and Identifying Potential Controls," Land, MDPI, vol. 11(5), pages 1-13, April.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Elliott R. Dossou-Yovo & Sander J. Zwart & Amadou Kouyaté & Ibrahima Ouédraogo & Oladele Bakare, 2018. "Predictors of Drought in Inland Valley Landscapes and Enabling Factors for Rice Farmers’ Mitigation Measures in the Sudan-Sahel Zone," Sustainability, MDPI, vol. 11(1), pages 1-17, December.
    2. Huang, Yawen & Tao, Bo & Lal, Rattan & Lorenz, Klaus & Jacinthe, Pierre-Andre & Shrestha, Raj K. & Bai, Xiongxiong & Singh, Maninder P. & Lindsey, Laura E. & Ren, Wei, 2023. "A global synthesis of biochar's sustainability in climate-smart agriculture - Evidence from field and laboratory experiments," Renewable and Sustainable Energy Reviews, Elsevier, vol. 172(C).
    3. Mark A. Anthony & Leho Tedersoo & Bruno Vos & Luc Croisé & Henning Meesenburg & Markus Wagner & Henning Andreae & Frank Jacob & Paweł Lech & Anna Kowalska & Martin Greve & Genoveva Popova & Beat Frey , 2024. "Fungal community composition predicts forest carbon storage at a continental scale," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    4. Tong Qiu & Robert Andrus & Marie-Claire Aravena & Davide Ascoli & Yves Bergeron & Roberta Berretti & Daniel Berveiller & Michal Bogdziewicz & Thomas Boivin & Raul Bonal & Don C. Bragg & Thomas Caignar, 2022. "Limits to reproduction and seed size-number trade-offs that shape forest dominance and future recovery," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
    5. Joachim Maes & Adrián G. Bruzón & José I. Barredo & Sara Vallecillo & Peter Vogt & Inés Marí Rivero & Fernando Santos-Martín, 2023. "Accounting for forest condition in Europe based on an international statistical standard," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    6. Telmo José Mendes & Diego Silva Siqueira & Eduardo Barretto Figueiredo & Ricardo de Oliveira Bordonal & Mara Regina Moitinho & José Marques Júnior & Newton La Scala Jr., 2021. "Soil carbon stock estimations: methods and a case study of the Maranhão State, Brazil," Environment, Development and Sustainability: A Multidisciplinary Approach to the Theory and Practice of Sustainable Development, Springer, vol. 23(11), pages 16410-16427, November.
    7. Xiuming Ding & Junfeng Wang & Qing Huang & Shan Hu & Yuejun Wu & Luya Wang, 2021. "The Effects of Waste Cement on the Bioavailability, Mobility, and Leaching of Cadmium in Soil," IJERPH, MDPI, vol. 18(16), pages 1-19, August.
    8. Joachim Eisenberg & Fabrice A. Muvundja, 2020. "Quantification of Erosion in Selected Catchment Areas of the Ruzizi River (DRC) Using the (R)USLE Model," Land, MDPI, vol. 9(4), pages 1-18, April.
    9. Banerjee, Onil & Crossman, Neville & Vargas, Renato & Brander, Luke & Verburg, Peter & Cicowiez, Martin & Hauck, Jennifer & McKenzie, Emily, 2020. "Global socio-economic impacts of changes in natural capital and ecosystem services: State of play and new modeling approaches," Ecosystem Services, Elsevier, vol. 46(C).
    10. Peter Bossew & Giorgia Cinelli & Giancarlo Ciotoli & Quentin G. Crowley & Marc De Cort & Javier Elío Medina & Valeria Gruber & Eric Petermann & Tore Tollefsen, 2020. "Development of a Geogenic Radon Hazard Index—Concept, History, Experiences," IJERPH, MDPI, vol. 17(11), pages 1-23, June.
    11. Carlos Manuel Hernández & Aliou Faye & Mamadou Ousseynou Ly & Zachary P. Stewart & P. V. Vara Prasad & Leonardo Mendes Bastos & Luciana Nieto & Ana J. P. Carcedo & Ignacio Antonio Ciampitti, 2021. "Soil and Climate Characterization to Define Environments for Summer Crops in Senegal," Sustainability, MDPI, vol. 13(21), pages 1-17, October.
    12. Ravic Nijbroek & Kristin Piikki & Mats Söderström & Bas Kempen & Katrine G. Turner & Simeon Hengari & John Mutua, 2018. "Soil Organic Carbon Baselines for Land Degradation Neutrality: Map Accuracy and Cost Tradeoffs with Respect to Complexity in Otjozondjupa, Namibia," Sustainability, MDPI, vol. 10(5), pages 1-20, May.
    13. Nancy L. Harris & David A. Gibbs & Alessandro Baccini & Richard A. Birdsey & Sytze Bruin & Mary Farina & Lola Fatoyinbo & Matthew C. Hansen & Martin Herold & Richard A. Houghton & Peter V. Potapov & D, 2021. "Global maps of twenty-first century forest carbon fluxes," Nature Climate Change, Nature, vol. 11(3), pages 234-240, March.
    14. Fritz, Steffen & See, Linda & Bayas, Juan Carlos Laso & Waldner, François & Jacques, Damien & Becker-Reshef, Inbal & Whitcraft, Alyssa & Baruth, Bettina & Bonifacio, Rogerio & Crutchfield, Jim & Rembo, 2019. "A comparison of global agricultural monitoring systems and current gaps," Agricultural Systems, Elsevier, vol. 168(C), pages 258-272.
    15. Mulenga Kalumba & Edwin Nyirenda & Imasiku Nyambe & Stefaan Dondeyne & Jos Van Orshoven, 2022. "Machine Learning Techniques for Estimating Hydraulic Properties of the Topsoil across the Zambezi River Basin," Land, MDPI, vol. 11(4), pages 1-22, April.
    16. Nouri, Milad & Homaee, Mehdi & Pereira, Luis S. & Bybordi, Mohammad, 2023. "Water management dilemma in the agricultural sector of Iran: A review focusing on water governance," Agricultural Water Management, Elsevier, vol. 288(C).
    17. Sándor Koós & Béla Pirkó & Gábor Szatmári & Péter Csathó & Marianna Magyar & József Szabó & Nándor Fodor & László Pásztor & Annamária Laborczi & Klára Pokovai & Anita Szabó, 2021. "Influence of the Shortening of the Winter Fertilization Prohibition Period in Hungary Assessed by Spatial Crop Simulation Analysis," Sustainability, MDPI, vol. 13(1), pages 1-15, January.
    18. Amirhossein Hassani & Adisa Azapagic & Nima Shokri, 2021. "Global predictions of primary soil salinization under changing climate in the 21st century," Nature Communications, Nature, vol. 12(1), pages 1-17, December.
    19. Mulenga Kalumba & Stefaan Dondeyne & Eline Vanuytrecht & Edwin Nyirenda & Jos Van Orshoven, 2022. "Functional Evaluation of Digital Soil Hydraulic Property Maps through Comparison of Simulated and Remotely Sensed Maize Canopy Cover," Land, MDPI, vol. 11(5), pages 1-15, April.
    20. Yu Feng & Zhenzhong Zeng & Timothy D. Searchinger & Alan D. Ziegler & Jie Wu & Dashan Wang & Xinyue He & Paul R. Elsen & Philippe Ciais & Rongrong Xu & Zhilin Guo & Liqing Peng & Yiheng Tao & Dominick, 2022. "Doubling of annual forest carbon loss over the tropics during the early twenty-first century," Nature Sustainability, Nature, vol. 5(5), pages 444-451, May.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:gam:jlands:v:10:y:2021:i:6:p:558-:d:562883. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: MDPI Indexing Manager (email available below). General contact details of provider: https://www.mdpi.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.