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Locally adaptive Bayesian P-splines with a Normal-Exponential-Gamma prior

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  • Scheipl, Fabian
  • Kneib, Thomas

Abstract

An implementation of locally adaptive penalized spline smoothing using a class of heavy-tailed shrinkage priors for the estimation of functional forms with highly varying curvature or discontinuities is presented. These priors utilize scale mixtures of normals with locally varying exponential-gamma distributed variances for the differences of the P-spline coefficients. A fully Bayesian hierarchical structure is derived with inference about the posterior being based on Markov Chain Monte Carlo techniques. Three increasingly flexible and automatic approaches are introduced to estimate the spatially varying structure of the variances. An extensive simulation study for Gaussian, Poisson, and Binomial responses shows that the performance of this approach on a number of benchmark functions is competitive to that of previous approaches. Results from applications with Gaussian and Poisson responses support the simulation results.

Suggested Citation

  • Scheipl, Fabian & Kneib, Thomas, 2009. "Locally adaptive Bayesian P-splines with a Normal-Exponential-Gamma prior," Computational Statistics & Data Analysis, Elsevier, vol. 53(10), pages 3533-3552, August.
  • Handle: RePEc:eee:csdana:v:53:y:2009:i:10:p:3533-3552
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    References listed on IDEAS

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    1. D. G. T. Denison & B. K. Mallick & A. F. M. Smith, 1998. "Automatic Bayesian curve fitting," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 60(2), pages 333-350.
    2. Jullion, Astrid & Lambert, Philippe, 2007. "Robust specification of the roughness penalty prior distribution in spatially adaptive Bayesian P-splines models," Computational Statistics & Data Analysis, Elsevier, vol. 51(5), pages 2542-2558, February.
    3. David J. Spiegelhalter & Nicola G. Best & Bradley P. Carlin & Angelika Van Der Linde, 2002. "Bayesian measures of model complexity and fit," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 64(4), pages 583-639, October.
    4. Brezger, Andreas & Lang, Stefan, 2006. "Generalized structured additive regression based on Bayesian P-splines," Computational Statistics & Data Analysis, Elsevier, vol. 50(4), pages 967-991, February.
    5. Wallstrom, Garrick & Liebner, Jeffrey & Kass, Robert E., 2008. "An Implementation of Bayesian Adaptive Regression Splines (BARS) in C with S and R Wrappers," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 26(i01).
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    Cited by:

    1. Annalisa Cadonna & Sylvia Fruhwirth-Schnatter & Peter Knaus, 2019. "Triple the gamma -- A unifying shrinkage prior for variance and variable selection in sparse state space and TVP models," Papers 1912.03100, arXiv.org.
    2. Soumya D. Mohanty & Ethan Fahnestock, 2021. "Adaptive spline fitting with particle swarm optimization," Computational Statistics, Springer, vol. 36(1), pages 155-191, March.
    3. Bremhorst, Vincent & Lambert, Philippe, 2013. "Flexible estimation in cure survival models using Bayesian P-splines," LIDAM Discussion Papers ISBA 2013039, Université catholique de Louvain, Institute of Statistics, Biostatistics and Actuarial Sciences (ISBA).
    4. Yang, Lianqiang & Hong, Yongmiao, 2017. "Adaptive penalized splines for data smoothing," Computational Statistics & Data Analysis, Elsevier, vol. 108(C), pages 70-83.

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