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A Bayesian Approach to DNA Sequence Segmentation

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  • Richard J. Boys
  • Daniel A. Henderson

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  • Richard J. Boys & Daniel A. Henderson, 2004. "A Bayesian Approach to DNA Sequence Segmentation," Biometrics, The International Biometric Society, vol. 60(3), pages 573-581, September.
    • Handle: RePEc:bla:biomet:v:60:y:2004:i:3:p:573-581
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    File URL: http://hdl.handle.net/10.1111/j.0006-341X.2004.00206.x
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    References listed on IDEAS

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    1. Chib, Siddhartha, 1996. "Calculating posterior distributions and modal estimates in Markov mixture models," Journal of Econometrics, Elsevier, vol. 75(1), pages 79-97, November.
    2. Sylvia. Richardson & Peter J. Green, 1997. "On Bayesian Analysis of Mixtures with an Unknown Number of Components (with discussion)," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 59(4), pages 731-792.
    3. Robert, Christian P. & Celeux, Gilles & Diebolt, Jean, 1993. "Bayesian estimation of hidden Markov chains: a stochastic implementation," Statistics & Probability Letters, Elsevier, vol. 16(1), pages 77-83, January.
    4. Matthew Stephens, 2000. "Dealing with label switching in mixture models," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 62(4), pages 795-809.
    5. C. P. Robert & T. Rydén & D. M. Titterington, 2000. "Bayesian inference in hidden Markov models through the reversible jump Markov chain Monte Carlo method," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 62(1), pages 57-75.
    6. R. J. Boys & D. A. Henderson & D. J. Wilkinson, 2000. "Detecting homogeneous segments in DNA sequences by using hidden Markov models," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 49(2), pages 269-285.
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    Citations

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    Cited by:

    1. Hilary S. Booth & Conrad J. Burden & John H. Maindonald & Lucia Santoso & Matthew J. Wakefield & Susan R. Wilson, 2005. "Discussion of “A Bayesian Approach to DNA Sequence Segmentation”," Biometrics, The International Biometric Society, vol. 61(2), pages 635-637, June.
    2. Luigi Spezia, 2010. "Bayesian analysis of multivariate Gaussian hidden Markov models with an unknown number of regimes," Journal of Time Series Analysis, Wiley Blackwell, vol. 31(1), pages 1-11, January.
    3. Nur, Darfiana & Allingham, David & Rousseau, Judith & Mengersen, Kerrie L. & McVinish, Ross, 2009. "Bayesian hidden Markov model for DNA sequence segmentation: A prior sensitivity analysis," Computational Statistics & Data Analysis, Elsevier, vol. 53(5), pages 1873-1882, March.
    4. R. J. Boys & D. A. Henderson, 2005. "Discussion of "A Bayesian Approach to DNA Sequence Segmentation "," Biometrics, The International Biometric Society, vol. 61(2), pages 637-639, June.
    5. Rolando de la Cruz & Cristian Meza & Nicolás Narria & Claudio Fuentes, 2022. "A Bayesian Change Point Analysis of the USD/CLP Series in Chile from 2018 to 2020: Understanding the Impact of Social Protests and the COVID-19 Pandemic," Mathematics, MDPI, vol. 10(18), pages 1-15, September.
    6. Gong Chen & Qing Zhou, 2010. "Heterogeneity in DNA Multiple Alignments: Modeling, Inference, and Applications in Motif Finding," Biometrics, The International Biometric Society, vol. 66(3), pages 694-704, September.
    7. Wolfgang P. Lehrach & Dirk Husmeier, 2009. "Segmenting bacterial and viral DNA sequence alignments with a trans‐dimensional phylogenetic factorial hidden Markov model," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 58(3), pages 307-327, July.
    8. Castro, Bruno M. & Lemes, Renan B. & Cesar, Jonatas & Hünemeier, Tábita & Leonardi, Florencia, 2018. "A model selection approach for multiple sequence segmentation and dimensionality reduction," Journal of Multivariate Analysis, Elsevier, vol. 167(C), pages 319-330.

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