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Computing Bayes: From Then `Til Now

Author

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  • Gael M. Martin
  • David T. Frazier
  • Christian P. Robert

Abstract

This paper takes the reader on a journey through the history of Bayesian computation, from the 18th century to the present day. Beginning with the one-dimensional integral first confronted by Bayes in 1763, we highlight the key contributions of: Laplace, Metropolis (and, importantly, his coauthors!), Hammersley and Handscomb, and Hastings, all of which set the foundations for the computational revolution in the late 20th century -- led, primarily, by Markov chain Monte Carlo (MCMC) algorithms. A very short outline of 21st century computational methods -- including pseudo-marginal MCMC, Hamiltonian Monte Carlo, sequential Monte Carlo, and the various `approximate' methods -- completes the paper.

Suggested Citation

  • Gael M. Martin & David T. Frazier & Christian P. Robert, 2022. "Computing Bayes: From Then `Til Now," Monash Econometrics and Business Statistics Working Papers 14/22, Monash University, Department of Econometrics and Business Statistics.
  • Handle: RePEc:msh:ebswps:2022-14
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    File URL: https://www.monash.edu/business/ebs/research/publications/ebs/wp14-2022.pdf
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    as
    1. Luke Bornn & Neil Shephard & Reza Solgi, 2019. "Moment conditions and Bayesian non‐parametrics," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 81(1), pages 5-43, February.
    2. Geweke, John, 1989. "Bayesian Inference in Econometric Models Using Monte Carlo Integration," Econometrica, Econometric Society, vol. 57(6), pages 1317-1339, November.
    3. David M. Blei & Alp Kucukelbir & Jon D. McAuliffe, 2017. "Variational Inference: A Review for Statisticians," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 112(518), pages 859-877, April.
    4. David T. Frazier & Ruben Loaiza-Maya & Gael M. Martin & Bonsoo Koo, 2021. "Loss-Based Variational Bayes Prediction," Papers 2104.14054, arXiv.org, revised May 2022.
    5. Carpenter, Bob & Gelman, Andrew & Hoffman, Matthew D. & Lee, Daniel & Goodrich, Ben & Betancourt, Michael & Brubaker, Marcus & Guo, Jiqiang & Li, Peter & Riddell, Allen, 2017. "Stan: A Probabilistic Programming Language," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 76(i01).
    6. David J. Nott & Robert Kohn, 2005. "Adaptive sampling for Bayesian variable selection," Biometrika, Biometrika Trust, vol. 92(4), pages 747-763, December.
    7. Matias Quiroz & Robert Kohn & Mattias Villani & Minh-Ngoc Tran, 2019. "Speeding Up MCMC by Efficient Data Subsampling," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 114(526), pages 831-843, April.
    8. Chib, Siddhartha & Greenberg, Edward, 1996. "Markov Chain Monte Carlo Simulation Methods in Econometrics," Econometric Theory, Cambridge University Press, vol. 12(3), pages 409-431, August.
    9. Jacquier, Eric & Polson, Nicholas G & Rossi, Peter E, 2002. "Bayesian Analysis of Stochastic Volatility Models," Journal of Business & Economic Statistics, American Statistical Association, vol. 20(1), pages 69-87, January.
    10. Geweke, John & Koop, Gary & van Dijk, Herman (ed.), 2011. "The Oxford Handbook of Bayesian Econometrics," OUP Catalogue, Oxford University Press, number 9780199559084, Decembrie.
    11. Kloek, Tuen & van Dijk, Herman K, 1978. "Bayesian Estimates of Equation System Parameters: An Application of Integration by Monte Carlo," Econometrica, Econometric Society, vol. 46(1), pages 1-19, January.
    12. Gareth O. Roberts & Jeffrey S. Rosenthal, 1999. "Convergence of Slice Sampler Markov Chains," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 61(3), pages 643-660.
    13. repec:dau:papers:123456789/6072 is not listed on IDEAS
    14. Laurent E. Calvet & Veronika Czellar, 2015. "Accurate Methods for Approximate Bayesian Computation Filtering," Journal of Financial Econometrics, Oxford University Press, vol. 13(4), pages 798-838.
    15. Håvard Rue & Sara Martino & Nicolas Chopin, 2009. "Approximate Bayesian inference for latent Gaussian models by using integrated nested Laplace approximations," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 71(2), pages 319-392, April.
    16. Sangjoon Kim & Neil Shephard & Siddhartha Chib, 1998. "Stochastic Volatility: Likelihood Inference and Comparison with ARCH Models," Review of Economic Studies, Oxford University Press, vol. 65(3), pages 361-393.
    17. Ardia, David & Baştürk, Nalan & Hoogerheide, Lennart & van Dijk, Herman K., 2012. "A comparative study of Monte Carlo methods for efficient evaluation of marginal likelihood," Computational Statistics & Data Analysis, Elsevier, vol. 56(11), pages 3398-3414.
    18. repec:dau:papers:123456789/3578 is not listed on IDEAS
    19. Thomas A. Dean & Sumeetpal S. Singh & Ajay Jasra & Gareth W. Peters, 2014. "Parameter Estimation for Hidden Markov Models with Intractable Likelihoods," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 41(4), pages 970-987, December.
    20. Petros Dellaportas & Ioannis Kontoyiannis, 2012. "Control variates for estimation based on reversible Markov chain Monte Carlo samplers," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 74(1), pages 133-161, January.
    21. Xin Luo & Håkon Tjelmeland, 2019. "A multiple-try Metropolis–Hastings algorithm with tailored proposals," Computational Statistics, Springer, vol. 34(3), pages 1109-1133, September.
    22. Chib, Siddhartha & Ramamurthy, Srikanth, 2010. "Tailored randomized block MCMC methods with application to DSGE models," Journal of Econometrics, Elsevier, vol. 155(1), pages 19-38, March.
    23. Bierkens, Joris & Bouchard-Côté, Alexandre & Doucet, Arnaud & Duncan, Andrew B. & Fearnhead, Paul & Lienart, Thibaut & Roberts, Gareth & Vollmer, Sebastian J., 2018. "Piecewise deterministic Markov processes for scalable Monte Carlo on restricted domains," Statistics & Probability Letters, Elsevier, vol. 136(C), pages 148-154.
    24. Ajay Jasra, 2015. "Approximate Bayesian Computation for a Class of Time Series Models," International Statistical Review, International Statistical Institute, vol. 83(3), pages 405-435, December.
    25. repec:dau:papers:123456789/3549 is not listed on IDEAS
    26. P. Damlen & J. Wakefield & S. Walker, 1999. "Gibbs sampling for Bayesian non‐conjugate and hierarchical models by using auxiliary variables," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 61(2), pages 331-344, April.
    27. David T. Frazier & Christian P. Robert & Judith Rousseau, 2020. "Model misspecification in approximate Bayesian computation: consequences and diagnostics," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 82(2), pages 421-444, April.
    28. Jacquier, Eric & Polson, Nicholas G & Rossi, Peter E, 1994. "Bayesian Analysis of Stochastic Volatility Models: Comments: Reply," Journal of Business & Economic Statistics, American Statistical Association, vol. 12(4), pages 413-417, October.
    29. repec:dau:papers:123456789/6189 is not listed on IDEAS
    30. Murray Pollock & Paul Fearnhead & Adam M. Johansen & Gareth O. Roberts, 2020. "Quasi‐stationary Monte Carlo and the ScaLE algorithm," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 82(5), pages 1167-1221, December.
    31. Gael M. Martin & David T. Frazier & Christian P. Robert, 2020. "Computing Bayes: Bayesian Computation from 1763 to the 21st Century," Monash Econometrics and Business Statistics Working Papers 14/20, Monash University, Department of Econometrics and Business Statistics.
    32. Ormerod, J. T. & Wand, M. P., 2010. "Explaining Variational Approximations," The American Statistician, American Statistical Association, vol. 64(2), pages 140-153.
    33. Gael M. Martin & David T. Frazier & Christian P. Robert, 2021. "Approximating Bayes in the 21st Century," Monash Econometrics and Business Statistics Working Papers 24/21, Monash University, Department of Econometrics and Business Statistics.
    34. Gareth O. Roberts & Jeffrey S. Rosenthal, 1998. "Optimal scaling of discrete approximations to Langevin diffusions," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 60(1), pages 255-268.
    35. Pitt, Michael K. & Silva, Ralph dos Santos & Giordani, Paolo & Kohn, Robert, 2012. "On some properties of Markov chain Monte Carlo simulation methods based on the particle filter," Journal of Econometrics, Elsevier, vol. 171(2), pages 134-151.
    36. Mathieu Gerber & Nicolas Chopin, 2015. "Sequential quasi Monte Carlo," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 77(3), pages 509-579, June.
    37. G. O. Roberts & S. K. Sahu, 1997. "Updating Schemes, Correlation Structure, Blocking and Parameterization for the Gibbs Sampler," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 59(2), pages 291-317.
    38. Giacomo Zanella & Gareth Roberts, 2019. "Scalable importance tempering and Bayesian variable selection," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 81(3), pages 489-517, July.
    39. George Deligiannidis & Arnaud Doucet & Michael K. Pitt, 2018. "The correlated pseudomarginal method," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 80(5), pages 839-870, November.
    40. Pierre E. Jacob & John O’Leary & Yves F. Atchadé, 2020. "Unbiased Markov chain Monte Carlo methods with couplings," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 82(3), pages 543-600, July.
    41. A. Doucet & M. K. Pitt & G. Deligiannidis & R. Kohn, 2015. "Efficient implementation of Markov chain Monte Carlo when using an unbiased likelihood estimator," Biometrika, Biometrika Trust, vol. 102(2), pages 295-313.
    42. Mark A. Beaumont & Jean-Marie Cornuet & Jean-Michel Marin & Christian P. Robert, 2009. "Adaptive approximate Bayesian computation," Biometrika, Biometrika Trust, vol. 96(4), pages 983-990.
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    Cited by:

    1. Gael M. Martin & David T. Frazier & Worapree Maneesoonthorn & Ruben Loaiza-Maya & Florian Huber & Gary Koop & John Maheu & Didier Nibbering & Anastasios Panagiotelis, 2022. "Bayesian Forecasting in Economics and Finance: A Modern Review," Papers 2212.03471, arXiv.org, revised Jul 2023.
    2. Gael M. Martin & David T. Frazier & Ruben Loaiza-Maya & Florian Huber & Gary Koop & John Maheu & Didier Nibbering & Anastasios Panagiotelis, 2023. "Bayesian Forecasting in the 21st Century: A Modern Review," Monash Econometrics and Business Statistics Working Papers 1/23, Monash University, Department of Econometrics and Business Statistics.

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    Keywords

    History of Bayesian computation; Laplace approximation; Metropolis-Hastings algorithm; importance sampling; Markov chain Monte Carlo; pseudo-marginal methods; Hamiltonian Monte Carlo; sequential Monte Carlo; approximate Bayesian methods;
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