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Importance sampling type estimators based on approximate marginal Markov chain Monte Carlo

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  • Matti Vihola
  • Jouni Helske
  • Jordan Franks

Abstract

We consider importance sampling (IS) type weighted estimators based on Markov chain Monte Carlo (MCMC) targeting an approximate marginal of the target distribution. In the context of Bayesian latent variable models, the MCMC typically operates on the hyperparameters, and the subsequent weighting may be based on IS or sequential Monte Carlo (SMC), but allows for multilevel techniques as well. The IS approach provides a natural alternative to delayed acceptance (DA) pseudo‐marginal/particle MCMC, and has many advantages over DA, including a straightforward parallelization and additional flexibility in MCMC implementation. We detail minimal conditions which ensure strong consistency of the suggested estimators, and provide central limit theorems with expressions for asymptotic variances. We demonstrate how our method can make use of SMC in the state space models context, using Laplace approximations and time‐discretized diffusions. Our experimental results are promising and show that the IS‐type approach can provide substantial gains relative to an analogous DA scheme, and is often competitive even without parallelization.

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  • Matti Vihola & Jouni Helske & Jordan Franks, 2020. "Importance sampling type estimators based on approximate marginal Markov chain Monte Carlo," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 47(4), pages 1339-1376, December.
  • Handle: RePEc:bla:scjsta:v:47:y:2020:i:4:p:1339-1376
    DOI: 10.1111/sjos.12492
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    as
    1. Pierre Del Moral & Arnaud Doucet & Ajay Jasra, 2006. "Sequential Monte Carlo samplers," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 68(3), pages 411-436, June.
    2. Pierre E. Jacob & Fredrik Lindsten & Thomas B. Schön, 2020. "Smoothing With Couplings of Conditional Particle Filters," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 115(530), pages 721-729, April.
    3. J. Durbin & S. J. Koopman, 2000. "Time series analysis of non‐Gaussian observations based on state space models from both classical and Bayesian perspectives," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 62(1), pages 3-56.
    4. Alexandros Beskos & Omiros Papaspiliopoulos & Gareth O. Roberts & Paul Fearnhead, 2006. "Exact and computationally efficient likelihood‐based estimation for discretely observed diffusion processes (with discussion)," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 68(3), pages 333-382, June.
    5. Godsill, Simon J. & Doucet, Arnaud & West, Mike, 2004. "Monte Carlo Smoothing for Nonlinear Time Series," Journal of the American Statistical Association, American Statistical Association, vol. 99, pages 156-168, January.
    6. Søren F. Jarner & Gareth O. Roberts, 2007. "Convergence of Heavy‐tailed Monte Carlo Markov Chain Algorithms," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 34(4), pages 781-815, December.
    7. H. E. Ogden, 2017. "On asymptotic validity of naive inference with an approximate likelihood," Biometrika, Biometrika Trust, vol. 104(1), pages 153-164.
    8. Michael B. Giles, 2008. "Multilevel Monte Carlo Path Simulation," Operations Research, INFORMS, vol. 56(3), pages 607-617, June.
    9. McLeish, Don, 2011. "A general method for debiasing a Monte Carlo estimator," Monte Carlo Methods and Applications, De Gruyter, vol. 17(4), pages 301-315, December.
    10. Koopman, Siem Jan & Shephard, Neil & Creal, Drew, 2009. "Testing the assumptions behind importance sampling," Journal of Econometrics, Elsevier, vol. 149(1), pages 2-11, April.
    11. Durbin, James & Koopman, Siem Jan, 2012. "Time Series Analysis by State Space Methods," OUP Catalogue, Oxford University Press, edition 2, number 9780199641178, Decembrie.
    12. Håvard Rue & Sara Martino & Nicolas Chopin, 2009. "Approximate Bayesian inference for latent Gaussian models by using integrated nested Laplace approximations," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 71(2), pages 319-392, April.
    13. Christophe Andrieu & Arnaud Doucet & Roman Holenstein, 2010. "Particle Markov chain Monte Carlo methods," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 72(3), pages 269-342, June.
    14. Fredrik Lindsten & Randal Douc & Eric Moulines, 2015. "Uniform Ergodicity of the Particle Gibbs Sampler," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 42(3), pages 775-797, September.
    15. Pitt, Michael K. & Silva, Ralph dos Santos & Giordani, Paolo & Kohn, Robert, 2012. "On some properties of Markov chain Monte Carlo simulation methods based on the particle filter," Journal of Econometrics, Elsevier, vol. 171(2), pages 134-151.
    16. Peter W. Glynn & Donald L. Iglehart, 1989. "Importance Sampling for Stochastic Simulations," Management Science, INFORMS, vol. 35(11), pages 1367-1392, November.
    17. Anthony Lee & Krzysztof Łatuszyński, 2014. "Variance bounding and geometric ergodicity of Markov chain Monte Carlo kernels for approximate Bayesian computation," Biometrika, Biometrika Trust, vol. 101(3), pages 655-671.
    18. Jarner, Søren Fiig & Hansen, Ernst, 2000. "Geometric ergodicity of Metropolis algorithms," Stochastic Processes and their Applications, Elsevier, vol. 85(2), pages 341-361, February.
    19. Bhattacharya, Sourabh, 2008. "Consistent estimation of the accuracy of importance sampling using regenerative simulation," Statistics & Probability Letters, Elsevier, vol. 78(15), pages 2522-2527, October.
    20. S S Singh & F Lindsten & E Moulines, 2017. "Blocking strategies and stability of particle Gibbs samplers," Biometrika, Biometrika Trust, vol. 104(4), pages 953-969.
    21. Chris Sherlock & Alexandre H. Thiery & Anthony Lee, 2017. "Pseudo-marginal Metropolis–Hastings sampling using averages of unbiased estimators," Biometrika, Biometrika Trust, vol. 104(3), pages 727-734.
    22. Matti Vihola & Jordan Franks, 2020. "On the use of approximate Bayesian computation Markov chain Monte Carlo with inflated tolerance and post-correction," Biometrika, Biometrika Trust, vol. 107(2), pages 381-395.
    23. Peter W. Glynn & Ward Whitt, 1992. "The Asymptotic Efficiency of Simulation Estimators," Operations Research, INFORMS, vol. 40(3), pages 505-520, June.
    24. Chang-Han Rhee & Peter W. Glynn, 2015. "Unbiased Estimation with Square Root Convergence for SDE Models," Operations Research, INFORMS, vol. 63(5), pages 1026-1043, October.
    25. George Deligiannidis & Arnaud Doucet & Michael K. Pitt, 2018. "The correlated pseudomarginal method," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 80(5), pages 839-870, November.
    26. Pierre E. Jacob & John O’Leary & Yves F. Atchadé, 2020. "Unbiased Markov chain Monte Carlo methods with couplings," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 82(3), pages 543-600, July.
    27. A. Doucet & M. K. Pitt & G. Deligiannidis & R. Kohn, 2015. "Efficient implementation of Markov chain Monte Carlo when using an unbiased likelihood estimator," Biometrika, Biometrika Trust, vol. 102(2), pages 295-313.
    28. J. Durbin, 2002. "A simple and efficient simulation smoother for state space time series analysis," Biometrika, Biometrika Trust, vol. 89(3), pages 603-616, August.
    29. Pieralberto Guarniero & Adam M. Johansen & Anthony Lee, 2017. "The Iterated Auxiliary Particle Filter," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 112(520), pages 1636-1647, October.
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